Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041924.01.T01 | GAU35628.1 | 77.043 | 257 | 59 | 0 | 5 | 261 | 6 | 262 | 4.46E-145 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041924.01.T01 | Q9SZL8 | 35.769 | 260 | 162 | 4 | 6 | 261 | 73 | 331 | 1.75E-46 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041924.01.T01 | A0A2Z6MT37 | 77.043 | 257 | 59 | 0 | 5 | 261 | 6 | 262 | 2.13e-145 | 431 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0880041924.01.T01 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041924.01.T01 | MTR_5g039760 | 48.454 | 194 | 73 | 4 | 8 | 199 | 12 | 180 | 7.42e-54 | 173 |
| MsG0880041924.01.T01 | MTR_7g074790 | 52.941 | 170 | 60 | 3 | 6 | 174 | 10 | 160 | 6.64e-49 | 161 |
| MsG0880041924.01.T01 | MTR_0402s0040 | 40.513 | 195 | 113 | 2 | 1 | 193 | 21 | 214 | 1.72e-40 | 146 |
| MsG0880041924.01.T01 | MTR_0558s0020 | 32.946 | 258 | 153 | 4 | 9 | 246 | 39 | 296 | 1.35e-39 | 139 |
| MsG0880041924.01.T01 | MTR_6g051425 | 31.890 | 254 | 164 | 4 | 8 | 254 | 19 | 270 | 3.02e-37 | 134 |
| MsG0880041924.01.T01 | MTR_4g102720 | 40.361 | 166 | 65 | 2 | 6 | 171 | 7 | 138 | 3.01e-34 | 124 |
| MsG0880041924.01.T01 | MTR_7g061980 | 52.252 | 111 | 51 | 2 | 6 | 115 | 10 | 119 | 2.54e-32 | 115 |
| MsG0880041924.01.T01 | MTR_6g090505 | 32.895 | 228 | 137 | 3 | 42 | 253 | 11 | 238 | 1.22e-31 | 120 |
| MsG0880041924.01.T01 | MTR_8g446020 | 35.795 | 176 | 111 | 1 | 73 | 246 | 81 | 256 | 1.49e-31 | 117 |
| MsG0880041924.01.T01 | MTR_5g015480 | 44.882 | 127 | 68 | 1 | 1 | 125 | 51 | 177 | 2.28e-27 | 106 |
| MsG0880041924.01.T01 | MTR_1g083640 | 29.565 | 230 | 142 | 4 | 12 | 221 | 57 | 286 | 1.41e-25 | 102 |
| MsG0880041924.01.T01 | MTR_1g070355 | 29.675 | 246 | 158 | 8 | 11 | 247 | 79 | 318 | 1.09e-24 | 103 |
| MsG0880041924.01.T01 | MTR_7g446520 | 29.075 | 227 | 146 | 2 | 10 | 236 | 92 | 303 | 4.29e-22 | 94.0 |
| MsG0880041924.01.T01 | MTR_7g446510 | 30.460 | 174 | 121 | 0 | 81 | 254 | 156 | 329 | 1.19e-21 | 92.8 |
| MsG0880041924.01.T01 | MTR_4g035820 | 28.467 | 274 | 169 | 10 | 2 | 260 | 71 | 332 | 1.31e-21 | 94.4 |
| MsG0880041924.01.T01 | MTR_1g008290 | 33.571 | 140 | 90 | 2 | 61 | 200 | 6 | 142 | 1.79e-20 | 85.5 |
| MsG0880041924.01.T01 | MTR_2g099430 | 52.874 | 87 | 41 | 0 | 29 | 115 | 26 | 112 | 1.86e-20 | 84.3 |
| MsG0880041924.01.T01 | MTR_2g070590 | 40.909 | 110 | 63 | 1 | 1 | 108 | 12 | 121 | 2.91e-20 | 84.0 |
| MsG0880041924.01.T01 | MTR_7g446480 | 29.885 | 174 | 122 | 0 | 81 | 254 | 141 | 314 | 2.98e-20 | 88.6 |
| MsG0880041924.01.T01 | MTR_8g067580 | 64.179 | 67 | 8 | 1 | 61 | 127 | 1 | 51 | 1.61e-19 | 80.5 |
| MsG0880041924.01.T01 | MTR_0337s0040 | 32.168 | 143 | 95 | 1 | 73 | 213 | 82 | 224 | 1.56e-18 | 82.4 |
| MsG0880041924.01.T01 | MTR_4g067290 | 44.118 | 102 | 55 | 2 | 6 | 106 | 56 | 156 | 2.77e-18 | 82.0 |
| MsG0880041924.01.T01 | MTR_4g067290 | 44.118 | 102 | 55 | 2 | 6 | 106 | 56 | 156 | 3.11e-18 | 81.6 |
| MsG0880041924.01.T01 | MTR_6g017200 | 42.574 | 101 | 56 | 1 | 1 | 99 | 53 | 153 | 4.54e-18 | 79.3 |
| MsG0880041924.01.T01 | MTR_4g067290 | 44.118 | 102 | 55 | 2 | 6 | 106 | 76 | 176 | 5.63e-18 | 81.3 |
| MsG0880041924.01.T01 | MTR_4g067290 | 44.118 | 102 | 55 | 2 | 6 | 106 | 74 | 174 | 5.74e-18 | 81.3 |
| MsG0880041924.01.T01 | MTR_4g067290 | 44.118 | 102 | 55 | 2 | 6 | 106 | 76 | 176 | 5.93e-18 | 81.3 |
| MsG0880041924.01.T01 | MTR_4g067290 | 44.118 | 102 | 55 | 2 | 6 | 106 | 116 | 216 | 7.15e-18 | 81.6 |
| MsG0880041924.01.T01 | MTR_1g057920 | 45.556 | 90 | 47 | 1 | 6 | 93 | 34 | 123 | 3.47e-17 | 75.9 |
| MsG0880041924.01.T01 | MTR_5g076070 | 24.576 | 236 | 171 | 4 | 3 | 234 | 50 | 282 | 5.88e-17 | 79.0 |
| MsG0880041924.01.T01 | MTR_2g014100 | 28.643 | 199 | 122 | 5 | 9 | 187 | 47 | 245 | 2.00e-16 | 77.0 |
| MsG0880041924.01.T01 | MTR_7g113010 | 39.370 | 127 | 61 | 2 | 6 | 130 | 457 | 569 | 7.47e-16 | 77.4 |
| MsG0880041924.01.T01 | MTR_2g098920 | 41.176 | 102 | 58 | 2 | 6 | 106 | 80 | 180 | 1.37e-15 | 74.7 |
| MsG0880041924.01.T01 | MTR_3g006370 | 35.938 | 128 | 80 | 2 | 6 | 131 | 50 | 177 | 1.06e-13 | 68.9 |
| MsG0880041924.01.T01 | MTR_1g019850 | 31.655 | 139 | 76 | 3 | 6 | 137 | 70 | 196 | 1.43e-13 | 68.9 |
| MsG0880041924.01.T01 | MTR_4g076000 | 65.116 | 43 | 15 | 0 | 74 | 116 | 2 | 44 | 5.75e-13 | 64.3 |
| MsG0880041924.01.T01 | MTR_1g013060 | 25.121 | 207 | 144 | 5 | 6 | 204 | 24 | 227 | 1.54e-12 | 65.9 |
| MsG0880041924.01.T01 | MTR_6g022080 | 30.263 | 152 | 101 | 3 | 18 | 165 | 97 | 247 | 1.75e-12 | 65.9 |
| MsG0880041924.01.T01 | MTR_2g098880 | 31.655 | 139 | 85 | 3 | 3 | 131 | 58 | 196 | 5.74e-12 | 64.3 |
| MsG0880041924.01.T01 | MTR_2g098880 | 31.655 | 139 | 85 | 3 | 3 | 131 | 70 | 208 | 7.41e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041924.01.T01 | AT4G38180 | 35.769 | 260 | 162 | 4 | 6 | 261 | 73 | 331 | 1.78e-47 | 169 |
| MsG0880041924.01.T01 | AT4G15090 | 33.721 | 258 | 168 | 3 | 6 | 261 | 51 | 307 | 6.26e-37 | 139 |
| MsG0880041924.01.T01 | AT4G15090 | 33.721 | 258 | 168 | 3 | 6 | 261 | 51 | 307 | 6.26e-37 | 139 |
| MsG0880041924.01.T01 | AT4G15090 | 33.721 | 258 | 168 | 3 | 6 | 261 | 51 | 307 | 6.26e-37 | 139 |
| MsG0880041924.01.T01 | AT4G15090 | 33.721 | 258 | 168 | 3 | 6 | 261 | 51 | 307 | 6.26e-37 | 139 |
| MsG0880041924.01.T01 | AT4G15090 | 33.721 | 258 | 168 | 3 | 6 | 261 | 51 | 307 | 6.26e-37 | 139 |
| MsG0880041924.01.T01 | AT1G76320 | 31.496 | 254 | 162 | 5 | 10 | 261 | 1 | 244 | 1.32e-30 | 120 |
| MsG0880041924.01.T01 | AT1G76320 | 31.496 | 254 | 162 | 5 | 10 | 261 | 1 | 244 | 1.40e-30 | 120 |
| MsG0880041924.01.T01 | AT1G76320 | 31.496 | 254 | 162 | 5 | 10 | 261 | 1 | 244 | 1.40e-30 | 120 |
| MsG0880041924.01.T01 | AT1G76320 | 31.496 | 254 | 162 | 5 | 10 | 261 | 1 | 244 | 1.48e-30 | 120 |
| MsG0880041924.01.T01 | AT3G22170 | 29.044 | 272 | 152 | 6 | 6 | 261 | 70 | 316 | 8.18e-26 | 107 |
| MsG0880041924.01.T01 | AT3G22170 | 29.044 | 272 | 152 | 6 | 6 | 261 | 70 | 316 | 8.18e-26 | 107 |
| MsG0880041924.01.T01 | AT3G06250 | 27.969 | 261 | 146 | 4 | 3 | 261 | 187 | 407 | 1.30e-25 | 106 |
| MsG0880041924.01.T01 | AT3G06250 | 35.294 | 102 | 52 | 2 | 6 | 106 | 28 | 116 | 1.55e-11 | 64.7 |
| MsG0880041924.01.T01 | AT3G06250 | 27.969 | 261 | 146 | 4 | 3 | 261 | 187 | 407 | 1.30e-25 | 106 |
| MsG0880041924.01.T01 | AT3G06250 | 35.294 | 102 | 52 | 2 | 6 | 106 | 28 | 116 | 1.55e-11 | 64.7 |
| MsG0880041924.01.T01 | AT3G06250 | 27.969 | 261 | 146 | 4 | 3 | 261 | 187 | 407 | 1.30e-25 | 106 |
| MsG0880041924.01.T01 | AT3G06250 | 35.294 | 102 | 52 | 2 | 6 | 106 | 28 | 116 | 1.55e-11 | 64.7 |
| MsG0880041924.01.T01 | AT2G27110 | 30.620 | 258 | 149 | 7 | 6 | 261 | 49 | 278 | 6.91e-25 | 104 |
| MsG0880041924.01.T01 | AT2G27110 | 30.620 | 258 | 149 | 7 | 6 | 261 | 49 | 278 | 6.91e-25 | 104 |
| MsG0880041924.01.T01 | AT5G18960 | 28.897 | 263 | 148 | 6 | 1 | 261 | 206 | 431 | 1.05e-22 | 97.8 |
| MsG0880041924.01.T01 | AT5G18960 | 35.294 | 102 | 52 | 2 | 6 | 106 | 43 | 131 | 1.56e-11 | 64.7 |
| MsG0880041924.01.T01 | AT5G18960 | 28.897 | 263 | 148 | 6 | 1 | 261 | 206 | 431 | 1.05e-22 | 97.8 |
| MsG0880041924.01.T01 | AT5G18960 | 35.294 | 102 | 52 | 2 | 6 | 106 | 43 | 131 | 1.56e-11 | 64.7 |
| MsG0880041924.01.T01 | AT1G52520 | 29.249 | 253 | 160 | 7 | 6 | 254 | 85 | 322 | 2.70e-22 | 96.7 |
| MsG0880041924.01.T01 | AT4G19990 | 24.809 | 262 | 143 | 4 | 9 | 254 | 24 | 247 | 4.71e-22 | 95.9 |
| MsG0880041924.01.T01 | AT4G19990 | 24.809 | 262 | 143 | 4 | 9 | 254 | 24 | 247 | 4.71e-22 | 95.9 |
| MsG0880041924.01.T01 | AT4G19990 | 24.809 | 262 | 143 | 4 | 9 | 254 | 38 | 261 | 5.06e-22 | 95.9 |
| MsG0880041924.01.T01 | AT4G19990 | 24.809 | 262 | 143 | 4 | 9 | 254 | 24 | 247 | 6.19e-22 | 95.5 |
| MsG0880041924.01.T01 | AT4G19990 | 24.809 | 262 | 143 | 4 | 9 | 254 | 24 | 247 | 7.63e-22 | 95.1 |
| MsG0880041924.01.T01 | AT4G19990 | 24.809 | 262 | 143 | 4 | 9 | 254 | 24 | 247 | 7.63e-22 | 95.1 |
| MsG0880041924.01.T01 | AT1G80010 | 27.899 | 276 | 162 | 10 | 6 | 261 | 95 | 353 | 1.47e-20 | 91.3 |
| MsG0880041924.01.T01 | AT2G32250 | 30.078 | 256 | 131 | 8 | 9 | 261 | 41 | 251 | 3.20e-19 | 87.4 |
| MsG0880041924.01.T01 | AT2G32250 | 30.078 | 256 | 131 | 8 | 9 | 261 | 41 | 251 | 3.42e-19 | 87.4 |
| MsG0880041924.01.T01 | AT2G32250 | 30.078 | 256 | 131 | 8 | 9 | 261 | 41 | 251 | 3.42e-19 | 87.4 |
| MsG0880041924.01.T01 | AT2G32250 | 30.078 | 256 | 131 | 8 | 9 | 261 | 41 | 251 | 3.42e-19 | 87.4 |
| MsG0880041924.01.T01 | AT2G32250 | 30.078 | 256 | 131 | 8 | 9 | 261 | 41 | 251 | 3.58e-19 | 87.4 |
| MsG0880041924.01.T01 | AT2G32250 | 30.078 | 256 | 131 | 8 | 9 | 261 | 41 | 251 | 3.58e-19 | 87.4 |
| MsG0880041924.01.T01 | AT1G10240 | 24.151 | 265 | 193 | 4 | 4 | 261 | 46 | 309 | 4.24e-19 | 87.0 |
| MsG0880041924.01.T01 | AT1G10240 | 24.151 | 265 | 193 | 4 | 4 | 261 | 46 | 309 | 4.24e-19 | 87.0 |
| MsG0880041924.01.T01 | AT2G32250 | 29.804 | 255 | 131 | 8 | 10 | 261 | 1 | 210 | 1.97e-18 | 85.1 |
| MsG0880041924.01.T01 | AT2G32250 | 29.804 | 255 | 131 | 8 | 10 | 261 | 1 | 210 | 2.11e-18 | 85.1 |
| MsG0880041924.01.T01 | AT4G19990 | 26.368 | 201 | 106 | 4 | 57 | 254 | 29 | 190 | 2.78e-18 | 84.7 |
| MsG0880041924.01.T01 | AT3G59470 | 42.157 | 102 | 57 | 2 | 6 | 106 | 70 | 170 | 6.16e-17 | 78.6 |
| MsG0880041924.01.T01 | AT3G59470 | 42.157 | 102 | 57 | 2 | 6 | 106 | 70 | 170 | 6.16e-17 | 78.6 |
| MsG0880041924.01.T01 | AT3G59470 | 42.157 | 102 | 57 | 2 | 6 | 106 | 82 | 182 | 7.05e-17 | 78.6 |
| MsG0880041924.01.T01 | AT2G27110 | 36.364 | 99 | 63 | 0 | 163 | 261 | 35 | 133 | 1.17e-15 | 77.0 |
| MsG0880041924.01.T01 | AT5G28530 | 23.551 | 276 | 193 | 7 | 2 | 261 | 51 | 324 | 1.82e-15 | 76.3 |
| MsG0880041924.01.T01 | AT5G28530 | 23.551 | 276 | 193 | 7 | 2 | 261 | 51 | 324 | 1.82e-15 | 76.3 |
| MsG0880041924.01.T01 | AT5G28530 | 23.551 | 276 | 193 | 7 | 2 | 261 | 51 | 324 | 2.06e-15 | 76.3 |
| MsG0880041924.01.T01 | AT3G07500 | 37.288 | 118 | 62 | 2 | 6 | 111 | 33 | 150 | 7.31e-13 | 66.6 |
| MsG0880041924.01.T01 | AT2G43280 | 34.375 | 128 | 82 | 2 | 6 | 131 | 22 | 149 | 3.24e-12 | 64.7 |
Find 43 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAATCACAAATGTATTT+TGG | 0.093989 | 8:+1249834 | MsG0880041924.01.T01:CDS |
| ATATTAGATTATGGATATTT+TGG | 0.153025 | 8:+1249872 | MsG0880041924.01.T01:CDS |
| AGACAACGTAACATGGTTTA+TGG | 0.229294 | 8:+1249725 | MsG0880041924.01.T01:CDS |
| TAGATGAAGCTTGGCAGTTT+TGG | 0.257858 | 8:+1249258 | MsG0880041924.01.T01:CDS |
| GATAAAACATGCCTCTATAA+TGG | 0.347519 | 8:-1249970 | None:intergenic |
| GTTGAGTATGGTAAAGAAAC+TGG | 0.361914 | 8:+1249281 | MsG0880041924.01.T01:CDS |
| AACAAACCTGCATGATCTAA+TGG | 0.366568 | 8:-1249351 | None:intergenic |
| TCAGTCCTTGTTTCAGCTCT+AGG | 0.400631 | 8:-1249428 | None:intergenic |
| GACAACGTAACATGGTTTAT+GGG | 0.404346 | 8:+1249726 | MsG0880041924.01.T01:CDS |
| AACTGGCTTTGGTGTTAGAA+AGG | 0.408770 | 8:+1249298 | MsG0880041924.01.T01:CDS |
| CAACGGTCTATTAGCATGAT+TGG | 0.420431 | 8:-1249927 | None:intergenic |
| ATTGCACTTAGTTCAAAGAA+TGG | 0.438544 | 8:+1249464 | MsG0880041924.01.T01:CDS |
| GGACTCTGGTTTGAGGCAAA+AGG | 0.461228 | 8:+1249613 | MsG0880041924.01.T01:CDS |
| TCAGGCTTTAACCATTATAG+AGG | 0.461587 | 8:+1249959 | MsG0880041924.01.T01:CDS |
| GCAGGTGGTAGAACTAATCT+TGG | 0.464714 | 8:+1249662 | MsG0880041924.01.T01:CDS |
| ACTAAATAAGATCTCTTGTC+CGG | 0.469862 | 8:-1249398 | None:intergenic |
| ATTGAAATGGCAGAGGACTC+TGG | 0.482937 | 8:+1249599 | MsG0880041924.01.T01:CDS |
| TCAAGCATATGAGATTGAAA+TGG | 0.499950 | 8:+1249586 | MsG0880041924.01.T01:CDS |
| TGGCAGAGGACTCTGGTTTG+AGG | 0.506073 | 8:+1249606 | MsG0880041924.01.T01:CDS |
| GAAGCTGTAAATCGTGGTTA+TGG | 0.510351 | 8:-1249517 | None:intergenic |
| CATGCCAACACTAGGTATAG+TGG | 0.514325 | 8:-1249222 | None:intergenic |
| TTGATAGTGTAGATGAAGCT+TGG | 0.514856 | 8:+1249249 | MsG0880041924.01.T01:CDS |
| TATGGTCCTTCACAAACTCA+TGG | 0.520238 | 8:-1249499 | None:intergenic |
| AACATGGTTTATGGGGAAGT+TGG | 0.523724 | 8:+1249734 | MsG0880041924.01.T01:CDS |
| CACTATACCTAGTGTTGGCA+TGG | 0.524699 | 8:+1249223 | MsG0880041924.01.T01:CDS |
| TATGGTAAAGAAACTGGCTT+TGG | 0.553868 | 8:+1249287 | MsG0880041924.01.T01:CDS |
| CAAGGAGGGTCATCGGATGC+CGG | 0.555862 | 8:+1249379 | MsG0880041924.01.T01:CDS |
| ACAACTCCATTAGATCATGC+AGG | 0.558799 | 8:+1249345 | MsG0880041924.01.T01:CDS |
| TGTAATCCATGAGTTTGTGA+AGG | 0.578123 | 8:+1249493 | MsG0880041924.01.T01:CDS |
| AGCAAGAAGACAACGTAACA+TGG | 0.579143 | 8:+1249718 | MsG0880041924.01.T01:CDS |
| TAATCTTGGATATACACGGT+TGG | 0.580985 | 8:+1249676 | MsG0880041924.01.T01:CDS |
| CAACTTATGAGTGCACAAGC+AGG | 0.586209 | 8:+1249644 | MsG0880041924.01.T01:CDS |
| TCAAACTCCATGCCAACACT+AGG | 0.589517 | 8:-1249230 | None:intergenic |
| ACAACGTAACATGGTTTATG+GGG | 0.591002 | 8:+1249727 | MsG0880041924.01.T01:CDS |
| GCTAGCATGTGTGTTGTCTG+TGG | 0.599379 | 8:-1249539 | None:intergenic |
| CAATCATGCTAATAGACCGT+TGG | 0.608792 | 8:+1249928 | MsG0880041924.01.T01:CDS |
| ATATGAGATTGAAATGGCAG+AGG | 0.610938 | 8:+1249592 | MsG0880041924.01.T01:CDS |
| ACAACCACTATACCTAGTGT+TGG | 0.612031 | 8:+1249218 | MsG0880041924.01.T01:CDS |
| AGAATCCTAGAGCTGAAACA+AGG | 0.627112 | 8:+1249423 | MsG0880041924.01.T01:CDS |
| AAGCCTGAAAACAATGCCAA+CGG | 0.656439 | 8:-1249944 | None:intergenic |
| CTTATGAGTGCACAAGCAGG+TGG | 0.669554 | 8:+1249647 | MsG0880041924.01.T01:CDS |
| GAACTAATCTTGGATATACA+CGG | 0.698243 | 8:+1249672 | MsG0880041924.01.T01:CDS |
| TCTGTGGAAGCTGTAAATCG+TGG | 0.747227 | 8:-1249523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAGATTATGGATATTT+TGG | + | Chr8:1249872-1249891 | MsG0880041924.01.T01:CDS | 15.0% |
| !! | GCAAAAATGATATTAGATTA+TGG | + | Chr8:1249863-1249882 | MsG0880041924.01.T01:CDS | 20.0% |
| !!! | AACAAATCACAAATGTATTT+TGG | + | Chr8:1249834-1249853 | MsG0880041924.01.T01:CDS | 20.0% |
| !!! | ACAAATCACAAATGTATTTT+GGG | + | Chr8:1249835-1249854 | MsG0880041924.01.T01:CDS | 20.0% |
| !! | CTTGAACTTCAGATATTTTA+CGG | - | Chr8:1249571-1249590 | None:intergenic | 25.0% |
| ACTAAATAAGATCTCTTGTC+CGG | - | Chr8:1249401-1249420 | None:intergenic | 30.0% | |
| ATTGCACTTAGTTCAAAGAA+TGG | + | Chr8:1249464-1249483 | MsG0880041924.01.T01:CDS | 30.0% | |
| GAACTAATCTTGGATATACA+CGG | + | Chr8:1249672-1249691 | MsG0880041924.01.T01:CDS | 30.0% | |
| GATAAAACATGCCTCTATAA+TGG | - | Chr8:1249973-1249992 | None:intergenic | 30.0% | |
| TCAAGCATATGAGATTGAAA+TGG | + | Chr8:1249586-1249605 | MsG0880041924.01.T01:CDS | 30.0% | |
| TGATGTGCATGAAAAAATGA+AGG | - | Chr8:1249800-1249819 | None:intergenic | 30.0% | |
| !! | CATGTTTTATCTTGGTTTTC+AGG | + | Chr8:1249982-1250001 | MsG0880041924.01.T01:CDS | 30.0% |
| !! | TATAGAGGCATGTTTTATCT+TGG | + | Chr8:1249974-1249993 | MsG0880041924.01.T01:CDS | 30.0% |
| !!! | AGATTATGGATATTTTGGTG+AGG | + | Chr8:1249877-1249896 | MsG0880041924.01.T01:CDS | 30.0% |
| !!! | ATTTTTTCATGCACATCAGA+TGG | + | Chr8:1249802-1249821 | MsG0880041924.01.T01:CDS | 30.0% |
| AACAAACCTGCATGATCTAA+TGG | - | Chr8:1249354-1249373 | None:intergenic | 35.0% | |
| ACAACGTAACATGGTTTATG+GGG | + | Chr8:1249727-1249746 | MsG0880041924.01.T01:CDS | 35.0% | |
| AGACAACGTAACATGGTTTA+TGG | + | Chr8:1249725-1249744 | MsG0880041924.01.T01:CDS | 35.0% | |
| ATATGAGATTGAAATGGCAG+AGG | + | Chr8:1249592-1249611 | MsG0880041924.01.T01:CDS | 35.0% | |
| GACAACGTAACATGGTTTAT+GGG | + | Chr8:1249726-1249745 | MsG0880041924.01.T01:CDS | 35.0% | |
| GTTGAGTATGGTAAAGAAAC+TGG | + | Chr8:1249281-1249300 | MsG0880041924.01.T01:CDS | 35.0% | |
| TAATCTTGGATATACACGGT+TGG | + | Chr8:1249676-1249695 | MsG0880041924.01.T01:CDS | 35.0% | |
| TGTAATCCATGAGTTTGTGA+AGG | + | Chr8:1249493-1249512 | MsG0880041924.01.T01:CDS | 35.0% | |
| ! | TATGGTAAAGAAACTGGCTT+TGG | + | Chr8:1249287-1249306 | MsG0880041924.01.T01:CDS | 35.0% |
| ! | TCAGGCTTTAACCATTATAG+AGG | + | Chr8:1249959-1249978 | MsG0880041924.01.T01:CDS | 35.0% |
| !! | TTGATAGTGTAGATGAAGCT+TGG | + | Chr8:1249249-1249268 | MsG0880041924.01.T01:CDS | 35.0% |
| !!! | AGGTTTGTTTTTTGCAAGGA+GGG | + | Chr8:1249365-1249384 | MsG0880041924.01.T01:CDS | 35.0% |
| !!! | ATGCAGGTTTGTTTTTTGCA+AGG | + | Chr8:1249361-1249380 | MsG0880041924.01.T01:CDS | 35.0% |
| !!! | TTATGGATATTTTGGTGAGG+TGG | + | Chr8:1249880-1249899 | MsG0880041924.01.T01:CDS | 35.0% |
| AACATGGTTTATGGGGAAGT+TGG | + | Chr8:1249734-1249753 | MsG0880041924.01.T01:CDS | 40.0% | |
| AAGCCTGAAAACAATGCCAA+CGG | - | Chr8:1249947-1249966 | None:intergenic | 40.0% | |
| ACAACCACTATACCTAGTGT+TGG | + | Chr8:1249218-1249237 | MsG0880041924.01.T01:CDS | 40.0% | |
| ACAACTCCATTAGATCATGC+AGG | + | Chr8:1249345-1249364 | MsG0880041924.01.T01:CDS | 40.0% | |
| AGAATCCTAGAGCTGAAACA+AGG | + | Chr8:1249423-1249442 | MsG0880041924.01.T01:CDS | 40.0% | |
| AGCAAGAAGACAACGTAACA+TGG | + | Chr8:1249718-1249737 | MsG0880041924.01.T01:CDS | 40.0% | |
| CAACGGTCTATTAGCATGAT+TGG | - | Chr8:1249930-1249949 | None:intergenic | 40.0% | |
| CAATCATGCTAATAGACCGT+TGG | + | Chr8:1249928-1249947 | MsG0880041924.01.T01:CDS | 40.0% | |
| GAAGCTGTAAATCGTGGTTA+TGG | - | Chr8:1249520-1249539 | None:intergenic | 40.0% | |
| TATGGTCCTTCACAAACTCA+TGG | - | Chr8:1249502-1249521 | None:intergenic | 40.0% | |
| ! | AGATGAAGCTTGGCAGTTTT+GGG | + | Chr8:1249259-1249278 | MsG0880041924.01.T01:CDS | 40.0% |
| ! | TAGATGAAGCTTGGCAGTTT+TGG | + | Chr8:1249258-1249277 | MsG0880041924.01.T01:CDS | 40.0% |
| !! | AACTGGCTTTGGTGTTAGAA+AGG | + | Chr8:1249298-1249317 | MsG0880041924.01.T01:CDS | 40.0% |
| !!! | CAGGTTTGTTTTTTGCAAGG+AGG | + | Chr8:1249364-1249383 | MsG0880041924.01.T01:CDS | 40.0% |
| !!! | TTTTTTGCAAGGAGGGTCAT+CGG | + | Chr8:1249372-1249391 | MsG0880041924.01.T01:CDS | 40.0% |
| ATTGAAATGGCAGAGGACTC+TGG | + | Chr8:1249599-1249618 | MsG0880041924.01.T01:CDS | 45.0% | |
| CAACTTATGAGTGCACAAGC+AGG | + | Chr8:1249644-1249663 | MsG0880041924.01.T01:CDS | 45.0% | |
| CATGCCAACACTAGGTATAG+TGG | - | Chr8:1249225-1249244 | None:intergenic | 45.0% | |
| GCAGGTGGTAGAACTAATCT+TGG | + | Chr8:1249662-1249681 | MsG0880041924.01.T01:CDS | 45.0% | |
| TCAAACTCCATGCCAACACT+AGG | - | Chr8:1249233-1249252 | None:intergenic | 45.0% | |
| TCTGTGGAAGCTGTAAATCG+TGG | - | Chr8:1249526-1249545 | None:intergenic | 45.0% | |
| ! | AGACCGTTGGCATTGTTTTC+AGG | + | Chr8:1249941-1249960 | MsG0880041924.01.T01:CDS | 45.0% |
| ! | TCAGTCCTTGTTTCAGCTCT+AGG | - | Chr8:1249431-1249450 | None:intergenic | 45.0% |
| !! | CACTATACCTAGTGTTGGCA+TGG | + | Chr8:1249223-1249242 | MsG0880041924.01.T01:CDS | 45.0% |
| !!! | TGGCAGTTTTGGGTTGAGTA+TGG | + | Chr8:1249269-1249288 | MsG0880041924.01.T01:CDS | 45.0% |
| CTTATGAGTGCACAAGCAGG+TGG | + | Chr8:1249647-1249666 | MsG0880041924.01.T01:CDS | 50.0% | |
| GCTAGCATGTGTGTTGTCTG+TGG | - | Chr8:1249542-1249561 | None:intergenic | 50.0% | |
| ! | GGACTCTGGTTTGAGGCAAA+AGG | + | Chr8:1249613-1249632 | MsG0880041924.01.T01:CDS | 50.0% |
| ! | TGGCAGAGGACTCTGGTTTG+AGG | + | Chr8:1249606-1249625 | MsG0880041924.01.T01:CDS | 55.0% |
| CAAGGAGGGTCATCGGATGC+CGG | + | Chr8:1249379-1249398 | MsG0880041924.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 1249215 | 1250021 | 1249215 | ID=MsG0880041924.01;Name=MsG0880041924.01 |
| Chr8 | mRNA | 1249215 | 1250021 | 1249215 | ID=MsG0880041924.01.T01;Parent=MsG0880041924.01;Name=MsG0880041924.01.T01;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|268 |
| Chr8 | exon | 1249215 | 1250021 | 1249215 | ID=MsG0880041924.01.T01:exon:1543;Parent=MsG0880041924.01.T01 |
| Chr8 | CDS | 1249215 | 1250021 | 1249215 | ID=MsG0880041924.01.T01:cds;Parent=MsG0880041924.01.T01 |
| Gene Sequence |
| Protein sequence |
