AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042440.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042440.01.T01 MTR_8g018410 81.053 190 23 3 1 190 1 177 2.62e-100 291
MsG0880042440.01.T01 MTR_2g099610 50.990 202 86 5 1 191 1 200 2.51e-55 177
MsG0880042440.01.T01 MTR_8g494240 41.667 192 98 4 1 191 1 179 2.78e-35 126
MsG0880042440.01.T01 MTR_8g494240 41.667 192 98 4 1 191 1 179 3.55e-35 125
MsG0880042440.01.T01 MTR_5g015340 39.691 194 99 4 1 192 1 178 9.22e-35 124
MsG0880042440.01.T01 MTR_5g015340 39.691 194 99 4 1 192 1 178 9.22e-35 124
MsG0880042440.01.T01 MTR_8g494240 41.667 192 98 4 1 191 1 179 3.22e-34 125
MsG0880042440.01.T01 MTR_2g031870 41.361 191 102 5 1 191 1 181 8.79e-34 122
MsG0880042440.01.T01 MTR_5g015340 39.691 194 99 4 1 192 1 178 9.16e-34 124
MsG0880042440.01.T01 MTR_4g097130 39.000 200 104 5 1 188 1 194 4.69e-33 120
MsG0880042440.01.T01 MTR_4g097130 39.086 197 103 5 1 188 1 189 5.35e-33 120
MsG0880042440.01.T01 MTR_4g097130 39.086 197 103 5 1 188 1 189 5.41e-33 120
MsG0880042440.01.T01 MTR_8g092810 35.052 194 110 3 1 191 1 181 5.15e-29 112
MsG0880042440.01.T01 MTR_0095s0040 39.645 169 82 5 1 163 1 155 2.10e-26 101
MsG0880042440.01.T01 MTR_1g041765 55.556 63 28 0 1 63 1 63 2.74e-19 81.6
MsG0880042440.01.T01 MTR_2g031870 33.508 191 91 6 1 191 1 155 1.91e-16 75.5
MsG0880042440.01.T01 MTR_7g096280 48.333 60 30 1 133 191 63 122 6.62e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042440.01.T01 AT1G72740 49.479 192 85 3 1 192 1 180 2.59e-52 169
MsG0880042440.01.T01 AT1G72740 49.215 191 85 3 1 191 1 179 4.12e-52 169
MsG0880042440.01.T01 AT1G17520 50.000 196 85 2 1 192 1 187 3.88e-46 154
MsG0880042440.01.T01 AT1G17520 49.744 195 85 2 1 191 1 186 1.47e-45 152
MsG0880042440.01.T01 AT1G17520 49.746 197 85 3 1 192 1 188 2.53e-44 149
MsG0880042440.01.T01 AT1G17520 49.490 196 85 3 1 191 1 187 8.81e-44 147
MsG0880042440.01.T01 AT1G49950 38.342 193 101 6 1 191 1 177 7.50e-31 114
MsG0880042440.01.T01 AT1G49950 38.342 193 101 6 1 191 1 177 7.50e-31 114
MsG0880042440.01.T01 AT1G49950 38.342 193 101 6 1 191 1 177 7.50e-31 114
MsG0880042440.01.T01 AT3G49850 35.233 193 107 3 1 190 1 178 1.40e-27 105
MsG0880042440.01.T01 AT3G49850 35.233 193 107 3 1 190 1 178 1.40e-27 105
MsG0880042440.01.T01 AT5G67580 35.602 191 113 3 1 191 1 181 6.40e-27 103
MsG0880042440.01.T01 AT5G67580 35.602 191 113 3 1 191 1 181 6.40e-27 103
MsG0880042440.01.T01 AT1G54260 53.226 62 29 0 130 191 2 63 4.85e-16 73.2

Find 38 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTTGTTTAGGATAAA+TGG 0.205337 8:-8733179 MsG0880042440.01.T01:intron
TGAAGCTCTGACTACATTAA+AGG 0.241020 8:-8731373 MsG0880042440.01.T01:CDS
AAAGACATGGCCCTGGTAAA+TGG 0.273347 8:-8733336 MsG0880042440.01.T01:CDS
AGCAGCAGCAGGTTTGCATT+TGG 0.345557 8:+8733113 None:intergenic
GCAGCAGCAGGTTTGCATTT+GGG 0.359093 8:+8733114 None:intergenic
TGGGAAATCAAAAGCTGAAA+TGG 0.385077 8:-8733396 MsG0880042440.01.T01:CDS
ACAGGAGCAGCAGCAGGAAC+AGG 0.428758 8:+8733078 None:intergenic
ACTACATTAAAGGATACTAA+TGG 0.429817 8:-8731363 MsG0880042440.01.T01:CDS
GAAGAAACAGGAGCAGCAGC+AGG 0.455772 8:+8733072 None:intergenic
ATAATATTACTCAAGTTCCT+AGG 0.465364 8:-8733140 MsG0880042440.01.T01:CDS
ATTCTCCTTGACCCTCAGTT+CGG 0.477510 8:-8733307 MsG0880042440.01.T01:CDS
AGAATGGCTTTCCATTTACC+AGG 0.481104 8:+8733325 None:intergenic
GCAGCACTGGAAGAAGAAAC+AGG 0.483242 8:+8733060 None:intergenic
GAACTGAGGGTCAAGGAGAA+TGG 0.501381 8:+8733309 None:intergenic
GGAGGAACAATTTGAAGAGG+AGG 0.508616 8:+8732982 None:intergenic
GAAGAAGACGCTCTTATCGC+TGG 0.509747 8:-8733364 MsG0880042440.01.T01:CDS
AGTCACTGACTGCAAGGTTG+AGG 0.520186 8:-8730992 MsG0880042440.01.T01:CDS
TGCCATTGCTAGTTTCATTG+AGG 0.522914 8:-8731328 MsG0880042440.01.T01:intron
TTGAGGATGCTTGTGAGTCA+AGG 0.546963 8:-8730975 MsG0880042440.01.T01:CDS
GGTAACCTTGAGGTCGATGT+TGG 0.557186 8:+8733264 None:intergenic
TCAGAAAGTCACTGACTGCA+AGG 0.561065 8:-8730998 MsG0880042440.01.T01:CDS
TTAACAACAACATCAGAAGA+AGG 0.563592 8:+8733015 None:intergenic
GAGTCAAGGGAAGCTTGAAA+AGG 0.565631 8:-8730961 MsG0880042440.01.T01:CDS
ATTGCTGCAGCAAAAGCATC+CGG 0.566445 8:-8731033 MsG0880042440.01.T01:intron
GGTTTGCATTTGGGAAACCT+AGG 0.568248 8:+8733123 None:intergenic
TCGTTCCAACATCGACCTCA+AGG 0.571236 8:-8733269 MsG0880042440.01.T01:intron
GGAGGAGGAACAATTTGAAG+AGG 0.571972 8:+8732979 None:intergenic
TGAGGATGCTTGTGAGTCAA+GGG 0.572315 8:-8730974 MsG0880042440.01.T01:CDS
TTGGAACGAGAAGTGAGTAA+AGG 0.596141 8:+8733283 None:intergenic
GGAATCGAAAGACATGGCCC+TGG 0.601309 8:-8733343 MsG0880042440.01.T01:CDS
GGTTTGTTTAGGATAAATGG+AGG 0.604249 8:-8733176 MsG0880042440.01.T01:intron
AACCTCAATGAAACTAGCAA+TGG 0.624133 8:+8731326 None:intergenic
AAGGACCGAACTGAGGGTCA+AGG 0.625130 8:+8733302 None:intergenic
TGAGTAAAGGACCGAACTGA+GGG 0.636132 8:+8733296 None:intergenic
GAATGGCTTTCCATTTACCA+GGG 0.646220 8:+8733326 None:intergenic
GTGAGTAAAGGACCGAACTG+AGG 0.646832 8:+8733295 None:intergenic
ACTAGCAATGGCATTTACGT+CGG 0.664174 8:+8731338 None:intergenic
ATCGCTGGAATCGAAAGACA+TGG 0.677427 8:-8733349 MsG0880042440.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTAAAAATTAAAAA+AGG + Chr8:8731145-8731164 None:intergenic 0.0%
!!! TTTTAATTTTTAATATTTTT+TGG - Chr8:8731153-8731172 MsG0880042440.01.T01:intron 0.0%
!! ACTAAAAGTTTAATTAAATT+TGG + Chr8:8732673-8732692 None:intergenic 10.0%
!! TTAATATATCAGATTATATT+AGG - Chr8:8732908-8732927 MsG0880042440.01.T01:intron 10.0%
!!! ATTATAAATGTTTTGTTAAA+AGG - Chr8:8732477-8732496 MsG0880042440.01.T01:intron 10.0%
!!! CTAAGTTTTTTTTATTTTTT+TGG + Chr8:8731636-8731655 None:intergenic 10.0%
!!! TTATAAATGTTTTGTTAAAA+GGG - Chr8:8732478-8732497 MsG0880042440.01.T01:intron 10.0%
!! AAAACATTTATAATACTTAC+AGG + Chr8:8732471-8732490 None:intergenic 15.0%
!! ATATAAGAATTAAAATACCT+AGG + Chr8:8731434-8731453 None:intergenic 15.0%
!! TAATGATTCTTTACATTTAT+TGG - Chr8:8732398-8732417 MsG0880042440.01.T01:intron 15.0%
!!! TAATATTTTTTGGTTTGTTT+AGG - Chr8:8731163-8731182 MsG0880042440.01.T01:intron 15.0%
!!! TTTAATTAAATTTGGTGAAA+CGG + Chr8:8732665-8732684 None:intergenic 15.0%
!! AATAAAATATTGTTGAGTGA+TGG - Chr8:8731881-8731900 MsG0880042440.01.T01:intron 20.0%
!! ATCAGATTATATTAGGTTAT+TGG - Chr8:8732915-8732934 MsG0880042440.01.T01:intron 20.0%
!!! ACAATATCTTTGTTTCATAA+GGG + Chr8:8732617-8732636 None:intergenic 20.0%
!!! ACTTTTAGTTCTTATATATG+TGG - Chr8:8732684-8732703 MsG0880042440.01.T01:intron 20.0%
!!! TACAATATCTTTGTTTCATA+AGG + Chr8:8732618-8732637 None:intergenic 20.0%
!!! TTAATTAAATTTGGTGAAAC+GGG + Chr8:8732664-8732683 None:intergenic 20.0%
!!! TTCTTTTGCTATTAATTTGA+TGG - Chr8:8732851-8732870 MsG0880042440.01.T01:intron 20.0%
! ACTACATTAAAGGATACTAA+TGG - Chr8:8732987-8733006 MsG0880042440.01.T01:CDS 25.0%
! ATAATATTACTCAAGTTCCT+AGG - Chr8:8731210-8731229 MsG0880042440.01.T01:intron 25.0%
! ATATCAACTACTAGAATGAA+TGG - Chr8:8733156-8733175 MsG0880042440.01.T01:CDS 25.0%
! ATCACTATGTTGTAACAATA+TGG + Chr8:8731742-8731761 None:intergenic 25.0%
! ATGACATCATACCTAATAAA+AGG + Chr8:8732951-8732970 None:intergenic 25.0%
! ATTATGACTCTGTAGTTAAA+AGG - Chr8:8732318-8732337 MsG0880042440.01.T01:intron 25.0%
! ATTGCATAATCTCAAAAAAC+AGG + Chr8:8733125-8733144 None:intergenic 25.0%
! ATTGTTACAACATAGTGATT+TGG - Chr8:8731743-8731762 MsG0880042440.01.T01:intron 25.0%
! TACAAAATGTTGTCAAATAG+CGG + Chr8:8732104-8732123 None:intergenic 25.0%
! TTGCATAATCTCAAAAAACA+GGG + Chr8:8733124-8733143 None:intergenic 25.0%
! TTTGTATTGAGTATTCTACA+TGG - Chr8:8733252-8733271 MsG0880042440.01.T01:intron 25.0%
!! AATATCTTTGTTTCATAAGG+GGG + Chr8:8732615-8732634 None:intergenic 25.0%
!! ACTTGGAAAACTAGTTTATA+TGG - Chr8:8733205-8733224 MsG0880042440.01.T01:intron 25.0%
!! CAATATCTTTGTTTCATAAG+GGG + Chr8:8732616-8732635 None:intergenic 25.0%
!! GGTTTTTAAATTGATCCTAT+AGG - Chr8:8732728-8732747 MsG0880042440.01.T01:intron 25.0%
!! GTACTTTTGTTCCTTTTATT+AGG - Chr8:8732937-8732956 MsG0880042440.01.T01:CDS 25.0%
!! TAATTTTCCTTGATGTAACT+TGG - Chr8:8733188-8733207 MsG0880042440.01.T01:intron 25.0%
!!! TGTTGTTTTTAACAACATCT+TGG + Chr8:8731409-8731428 None:intergenic 25.0%
!!! TTTGGTTTGTTTAGGATAAA+TGG - Chr8:8731171-8731190 MsG0880042440.01.T01:intron 25.0%
AAATAAACACACGCACTAAA+GGG + Chr8:8731823-8731842 None:intergenic 30.0%
CTTTACATTTATTGGATGAC+TGG - Chr8:8732406-8732425 MsG0880042440.01.T01:intron 30.0%
GATTTATAATGTTGTTGTCG+CGG - Chr8:8732014-8732033 MsG0880042440.01.T01:intron 30.0%
TTAACAACAACATCAGAAGA+AGG + Chr8:8731338-8731357 None:intergenic 30.0%
TTGTTAAAAACAACACACCT+AGG - Chr8:8731414-8731433 MsG0880042440.01.T01:intron 30.0%
TTGTTAAATAGCAGCTATAG+AGG + Chr8:8732192-8732211 None:intergenic 30.0%
! AGTTAAAAGGCTTTTGTACT+CGG - Chr8:8732331-8732350 MsG0880042440.01.T01:intron 30.0%
! CTATAGCTGCTATTTAACAA+CGG - Chr8:8732192-8732211 MsG0880042440.01.T01:intron 30.0%
! GTTGTGAGGAAATTTTATGT+GGG - Chr8:8731765-8731784 MsG0880042440.01.T01:intron 30.0%
! TAGTTTTCCAAGTTACATCA+AGG + Chr8:8733198-8733217 None:intergenic 30.0%
!! ATTAGAGCATCATTTTGTAC+TGG - Chr8:8732513-8732532 MsG0880042440.01.T01:intron 30.0%
!! TGTTTTGTTAAAAGGGTAGA+AGG - Chr8:8732485-8732504 MsG0880042440.01.T01:intron 30.0%
!! TTAGAGCATCATTTTGTACT+GGG - Chr8:8732514-8732533 MsG0880042440.01.T01:intron 30.0%
!!! AGTGACTTTCTGAAATTTTG+AGG + Chr8:8733345-8733364 None:intergenic 30.0%
!!! TTTCTGAAATTTTGAGGAAC+CGG + Chr8:8733339-8733358 None:intergenic 30.0%
AAAAACGAAAACCCTAAGCT+AGG + Chr8:8731116-8731135 None:intergenic 35.0%
AAAACCGTCTTAAAAGGAGA+GGG + Chr8:8731967-8731986 None:intergenic 35.0%
AAAACGAAAACCCTAAGCTA+GGG + Chr8:8731115-8731134 None:intergenic 35.0%
AACCTCAATGAAACTAGCAA+TGG + Chr8:8733027-8733046 None:intergenic 35.0%
AATAAACACACGCACTAAAG+GGG + Chr8:8731822-8731841 None:intergenic 35.0%
ATAGGTGTACATGTAATGAC+AGG - Chr8:8732746-8732765 MsG0880042440.01.T01:intron 35.0%
CAAATAAACACACGCACTAA+AGG + Chr8:8731824-8731843 None:intergenic 35.0%
CATATTATCTCATCCAATGC+AGG + Chr8:8731909-8731928 None:intergenic 35.0%
CTCTACAAAACCGTCTTAAA+AGG + Chr8:8731973-8731992 None:intergenic 35.0%
GCGTGTGTTTATTTGAGTAT+GGG - Chr8:8731829-8731848 MsG0880042440.01.T01:intron 35.0%
GTCATTACATGTACACCTAT+AGG + Chr8:8732746-8732765 None:intergenic 35.0%
GTGTTTATTTGAGTATGGGT+TGG - Chr8:8731833-8731852 MsG0880042440.01.T01:intron 35.0%
TACTATACCATTTCGTGAGT+TGG - Chr8:8733089-8733108 MsG0880042440.01.T01:CDS 35.0%
TAGGTGTACATGTAATGACA+GGG - Chr8:8732747-8732766 MsG0880042440.01.T01:intron 35.0%
TATATCGTAGTGACTAGAGA+TGG - Chr8:8732567-8732586 MsG0880042440.01.T01:intron 35.0%
TCTTCTGAACAATTCGTCAT+TGG + Chr8:8731505-8731524 None:intergenic 35.0%
TGCGTGTGTTTATTTGAGTA+TGG - Chr8:8731828-8731847 MsG0880042440.01.T01:intron 35.0%
TGGGAAATCAAAAGCTGAAA+TGG - Chr8:8730954-8730973 MsG0880042440.01.T01:CDS 35.0%
TTTCAAACCAACTCACGAAA+TGG + Chr8:8733099-8733118 None:intergenic 35.0%
! AGAACCTGAGTTTGATTTCT+TGG - Chr8:8731522-8731541 MsG0880042440.01.T01:intron 35.0%
! GAAATTTTATGTGGGTGTCT+GGG - Chr8:8731773-8731792 MsG0880042440.01.T01:intron 35.0%
! GGTTGTGAGGAAATTTTATG+TGG - Chr8:8731764-8731783 MsG0880042440.01.T01:intron 35.0%
! GGTTTGTTTAGGATAAATGG+AGG - Chr8:8731174-8731193 MsG0880042440.01.T01:intron 35.0%
! TGAAGCTCTGACTACATTAA+AGG - Chr8:8732977-8732996 MsG0880042440.01.T01:CDS 35.0%
! TTTTGCTGCAGCAATATATG+TGG + Chr8:8733312-8733331 None:intergenic 35.0%
!! AACATAGTGATTTGGTTGTG+AGG - Chr8:8731751-8731770 MsG0880042440.01.T01:intron 35.0%
!! ACATCTTGGTCATTTTGAAG+AGG + Chr8:8731395-8731414 None:intergenic 35.0%
!!! ATTTTGATTAACAGCAGCAC+TGG + Chr8:8731306-8731325 None:intergenic 35.0%
!!! CTTTTAAGACGGTTTTGTAG+AGG - Chr8:8731971-8731990 MsG0880042440.01.T01:intron 35.0%
ACTAGCAATGGCATTTACGT+CGG + Chr8:8733015-8733034 None:intergenic 40.0%
AGAATGGCTTTCCATTTACC+AGG + Chr8:8731028-8731047 None:intergenic 40.0%
ATAAACACACGCACTAAAGG+GGG + Chr8:8731821-8731840 None:intergenic 40.0%
ATGTTTGGTTGTTGTAGTCG+TGG - Chr8:8732262-8732281 MsG0880042440.01.T01:intron 40.0%
CAAAACCGTCTTAAAAGGAG+AGG + Chr8:8731968-8731987 None:intergenic 40.0%
CAATCAGTCTGATCGGTAAA+AGG - Chr8:8732707-8732726 MsG0880042440.01.T01:intron 40.0%
GAATGGCTTTCCATTTACCA+GGG + Chr8:8731027-8731046 None:intergenic 40.0%
TATGTGGCAATCAGTCTGAT+CGG - Chr8:8732700-8732719 MsG0880042440.01.T01:intron 40.0%
TCCACCAAGAAATCAAACTC+AGG + Chr8:8731529-8731548 None:intergenic 40.0%
TCTGAACAATTCGTCATTGG+CGG + Chr8:8731502-8731521 None:intergenic 40.0%
TGTTTGGTTGTTGTAGTCGT+GGG - Chr8:8732263-8732282 MsG0880042440.01.T01:intron 40.0%
TTGGAACGAGAAGTGAGTAA+AGG + Chr8:8731070-8731089 None:intergenic 40.0%
! AAAAGGCTTTTGTACTCGGA+TGG - Chr8:8732335-8732354 MsG0880042440.01.T01:intron 40.0%
! ACCTGAGTTTGATTTCTTGG+TGG - Chr8:8731525-8731544 MsG0880042440.01.T01:intron 40.0%
! CTGCTATTTAACAACGGTGT+TGG - Chr8:8732198-8732217 MsG0880042440.01.T01:intron 40.0%
! GCATCATTTTGTACTGGGAT+TGG - Chr8:8732519-8732538 MsG0880042440.01.T01:intron 40.0%
! GGAAATTTTATGTGGGTGTC+TGG - Chr8:8731772-8731791 MsG0880042440.01.T01:intron 40.0%
! TGCCATTGCTAGTTTCATTG+AGG - Chr8:8733022-8733041 MsG0880042440.01.T01:CDS 40.0%
! TTCGTGTCACTCTAGATGTT+TGG - Chr8:8732247-8732266 MsG0880042440.01.T01:intron 40.0%
!! ACATCCCTCTCCTTTTAAGA+CGG - Chr8:8731960-8731979 MsG0880042440.01.T01:intron 40.0%
!! TCTTGGTCATTTTGAAGAGG+AGG + Chr8:8731392-8731411 None:intergenic 40.0%
!! TTAAGACGGTTTTGTAGAGG+TGG - Chr8:8731974-8731993 MsG0880042440.01.T01:intron 40.0%
!! TTGAGTATGGGTTGGTTACT+TGG - Chr8:8731841-8731860 MsG0880042440.01.T01:intron 40.0%
!!! TTTTTTTGGCGTTAACCCTC+CGG + Chr8:8731622-8731641 None:intergenic 40.0%
AAAGACATGGCCCTGGTAAA+TGG - Chr8:8731014-8731033 MsG0880042440.01.T01:CDS 45.0%
AATGTTGTTGTCGCGGATAG+CGG - Chr8:8732021-8732040 MsG0880042440.01.T01:intron 45.0%
AGGTTACCTTACCCTAGCTT+AGG - Chr8:8731101-8731120 MsG0880042440.01.T01:intron 45.0%
AGTGACACGAATGAGCCTAT+AGG + Chr8:8732238-8732257 None:intergenic 45.0%
ATCGCTGGAATCGAAAGACA+TGG - Chr8:8731001-8731020 MsG0880042440.01.T01:CDS 45.0%
ATGAGCCTATAGGCTATAGC+AGG + Chr8:8732228-8732247 None:intergenic 45.0%
ATTCTCCTTGACCCTCAGTT+CGG - Chr8:8731043-8731062 MsG0880042440.01.T01:intron 45.0%
GAAAACCCTAAGCTAGGGTA+AGG + Chr8:8731110-8731129 None:intergenic 45.0%
GACCATGGTATTCAGAGTTC+GGG + Chr8:8731584-8731603 None:intergenic 45.0%
GAGTCAAGGGAAGCTTGAAA+AGG - Chr8:8733389-8733408 MsG0880042440.01.T01:CDS 45.0%
GCTATACTGCTAGAGCGTAA+TGG + Chr8:8732168-8732187 None:intergenic 45.0%
GGACCATGGTATTCAGAGTT+CGG + Chr8:8731585-8731604 None:intergenic 45.0%
GGAGGAACAATTTGAAGAGG+AGG + Chr8:8731371-8731390 None:intergenic 45.0%
GGAGGAGGAACAATTTGAAG+AGG + Chr8:8731374-8731393 None:intergenic 45.0%
GGTTACCTTACCCTAGCTTA+GGG - Chr8:8731102-8731121 MsG0880042440.01.T01:intron 45.0%
GGTTTGCATTTGGGAAACCT+AGG + Chr8:8731230-8731249 None:intergenic 45.0%
GTTTGGTTGTTGTAGTCGTG+GGG - Chr8:8732264-8732283 MsG0880042440.01.T01:intron 45.0%
TGAGGATGCTTGTGAGTCAA+GGG - Chr8:8733376-8733395 MsG0880042440.01.T01:CDS 45.0%
TGAGTAAAGGACCGAACTGA+GGG + Chr8:8731057-8731076 None:intergenic 45.0%
TTGAGGATGCTTGTGAGTCA+AGG - Chr8:8733375-8733394 MsG0880042440.01.T01:CDS 45.0%
TTGAGTGATGGTTCCTGCAT+TGG - Chr8:8731893-8731912 MsG0880042440.01.T01:intron 45.0%
TTTGGTTGTTGTAGTCGTGG+GGG - Chr8:8732265-8732284 MsG0880042440.01.T01:intron 45.0%
! TCAGAAAGTCACTGACTGCA+AGG - Chr8:8733352-8733371 MsG0880042440.01.T01:CDS 45.0%
! TTTTGTACTCGGATGGTCGA+CGG - Chr8:8732342-8732361 MsG0880042440.01.T01:intron 45.0%
!! ATTGCTGCAGCAAAAGCATC+CGG - Chr8:8733317-8733336 MsG0880042440.01.T01:CDS 45.0%
!! GGGTTGGTTACTTGGTCAAT+TGG - Chr8:8731849-8731868 MsG0880042440.01.T01:intron 45.0%
!! TGGTCATTTTGAAGAGGAGG+AGG + Chr8:8731389-8731408 None:intergenic 45.0%
AACAAACACCTCTCATGCCC+AGG + Chr8:8732442-8732461 None:intergenic 50.0%
ACGCACTAAAGGGGGAATTG+TGG + Chr8:8731813-8731832 None:intergenic 50.0%
AGCAGCAGCAGGTTTGCATT+TGG + Chr8:8731240-8731259 None:intergenic 50.0%
AGCCTATAGGCTATAGCAGG+TGG + Chr8:8732225-8732244 None:intergenic 50.0%
ATGACTGGTAGTCGTAGTCC+TGG - Chr8:8732421-8732440 MsG0880042440.01.T01:intron 50.0%
GAACTGAGGGTCAAGGAGAA+TGG + Chr8:8731044-8731063 None:intergenic 50.0%
GAAGAAGACGCTCTTATCGC+TGG - Chr8:8730986-8731005 MsG0880042440.01.T01:CDS 50.0%
GACCACCTGCTATAGCCTAT+AGG - Chr8:8732220-8732239 MsG0880042440.01.T01:intron 50.0%
GCAGCAGCAGGTTTGCATTT+GGG + Chr8:8731239-8731258 None:intergenic 50.0%
GCTAGGGTAAGGTAACCTTG+AGG + Chr8:8731099-8731118 None:intergenic 50.0%
GGTAACCTTGAGGTCGATGT+TGG + Chr8:8731089-8731108 None:intergenic 50.0%
GTATTCAGAGTTCGGGCAGA+AGG + Chr8:8731577-8731596 None:intergenic 50.0%
GTGAGTAAAGGACCGAACTG+AGG + Chr8:8731058-8731077 None:intergenic 50.0%
TCGTTCCAACATCGACCTCA+AGG - Chr8:8731081-8731100 MsG0880042440.01.T01:intron 50.0%
TGACTGGTAGTCGTAGTCCT+GGG - Chr8:8732422-8732441 MsG0880042440.01.T01:intron 50.0%
TGCCCGAACTCTGAATACCA+TGG - Chr8:8731579-8731598 MsG0880042440.01.T01:intron 50.0%
! AGTCACTGACTGCAAGGTTG+AGG - Chr8:8733358-8733377 MsG0880042440.01.T01:CDS 50.0%
! CGTTAACCCTCCGGTTTTCA+GGG + Chr8:8731613-8731632 None:intergenic 50.0%
! GCAGCACTGGAAGAAGAAAC+AGG + Chr8:8731293-8731312 None:intergenic 50.0%
! GTTAACCCTCCGGTTTTCAG+GGG + Chr8:8731612-8731631 None:intergenic 50.0%
!! TTTTCAGGGGAATGGGACCA+TGG + Chr8:8731599-8731618 None:intergenic 50.0%
AAGGACCGAACTGAGGGTCA+AGG + Chr8:8731051-8731070 None:intergenic 55.0%
AAGGGGGAATTGTGGAGACC+AGG + Chr8:8731805-8731824 None:intergenic 55.0%
CCATTCCCCTGAAAACCGGA+GGG - Chr8:8731604-8731623 MsG0880042440.01.T01:intron 55.0%
GAAGAAACAGGAGCAGCAGC+AGG + Chr8:8731281-8731300 None:intergenic 55.0%
GGAATCGAAAGACATGGCCC+TGG - Chr8:8731007-8731026 MsG0880042440.01.T01:CDS 55.0%
GGTCCCATTCCCCTGAAAAC+CGG - Chr8:8731600-8731619 MsG0880042440.01.T01:intron 55.0%
! GCGTTAACCCTCCGGTTTTC+AGG + Chr8:8731614-8731633 None:intergenic 55.0%
!! CCTCCGGTTTTCAGGGGAAT+GGG + Chr8:8731606-8731625 None:intergenic 55.0%
ACAGGAGCAGCAGCAGGAAC+AGG + Chr8:8731275-8731294 None:intergenic 60.0%
CCCATTCCCCTGAAAACCGG+AGG - Chr8:8731603-8731622 MsG0880042440.01.T01:intron 60.0%
GAAGAAGCAGCAGCAGCAGC+AGG + Chr8:8731251-8731270 None:intergenic 60.0%
GTCGTAGTCCTGGGCATGAG+AGG - Chr8:8732431-8732450 MsG0880042440.01.T01:intron 60.0%
TGGGTGTCTGGGTTCGATCC+TGG - Chr8:8731784-8731803 MsG0880042440.01.T01:intron 60.0%
TGTAGTCGTGGGGGTGAGAG+CGG - Chr8:8732274-8732293 MsG0880042440.01.T01:intron 60.0%
!! CCCTCCGGTTTTCAGGGGAA+TGG + Chr8:8731607-8731626 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 8730953 8733419 8730953 ID=MsG0880042440.01;Name=MsG0880042440.01
Chr8 mRNA 8730953 8733419 8730953 ID=MsG0880042440.01.T01;Parent=MsG0880042440.01;Name=MsG0880042440.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|4|0|192
Chr8 exon 8733270 8733419 8733270 ID=MsG0880042440.01.T01:exon:2818;Parent=MsG0880042440.01.T01
Chr8 exon 8732937 8733187 8732937 ID=MsG0880042440.01.T01:exon:2817;Parent=MsG0880042440.01.T01
Chr8 exon 8731329 8731413 8731329 ID=MsG0880042440.01.T01:exon:2816;Parent=MsG0880042440.01.T01
Chr8 exon 8730953 8731045 8730953 ID=MsG0880042440.01.T01:exon:2815;Parent=MsG0880042440.01.T01
Chr8 CDS 8733270 8733419 8733270 ID=MsG0880042440.01.T01:cds;Parent=MsG0880042440.01.T01
Chr8 CDS 8732937 8733187 8732937 ID=MsG0880042440.01.T01:cds;Parent=MsG0880042440.01.T01
Chr8 CDS 8731329 8731413 8731329 ID=MsG0880042440.01.T01:cds;Parent=MsG0880042440.01.T01
Chr8 CDS 8730953 8731045 8730953 ID=MsG0880042440.01.T01:cds;Parent=MsG0880042440.01.T01
Gene Sequence

>MsG0880042440.01.T01

ATGGGAAATCAAAAGCTGAAATGGACGAATGAAGAAGAAGACGCTCTTATCGCTGGAATCGAAAGACATGGCCCTGGTAAATGGAAAGCCATTCTCCTTGACCCTCAGTTCGGTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGAGGAATATGAATGTGAATAATATTACTCAAGTTCCTAGGTTTCCCAAATGCAAACCTGCTGCTGCTGCTGCTTCTTCTCCTGTTCCTGCTGCTGCTCCTGTTTCTTCTTCCAGTGCTGCTGTTAATCAAAATGTTGCTCTTCCTTCTTCTGATGTTGTTGTTAACAATGTTACTCCTCCTCTTCAAATTGTTCCTCCTCCTCTTCAAAATGACCAAGATGTTGTTAAAAACAACACACCTAGGTATGATGTCATGATTTATGAAGCTCTGACTACATTAAAGGATACTAATGGATCCGACGTAAATGCCATTGCTAGTTTCATTGAGCAAAAGCATCCGGTTCCTCAAAATTTCAGAAAGTCACTGACTGCAAGGTTGAGGATGCTTGTGAGTCAAGGGAAGCTTGAAAAGGTAAATTAA
Protein sequence

>MsG0880042440.01.T01

MGNQKLKWTNEEEDALIAGIERHGPGKWKAILLDPQFGPLLTSRSNIDLKDKWRNMNVNNITQVPRFPKCKPAAAAASSPVPAAAPVSSSSAAVNQNVALPSSDVVVNNVTPPLQIVPPPLQNDQDVVKNNTPRYDVMIYEALTTLKDTNGSDVNAIASFIEQKHPVPQNFRKSLTARLRMLVSQGKLEKVN*