AlfalfaGEDB | MsG0880042598.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042598.01

KEGG: K25507
GO: -
PFAM: PF00505

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042598.01.T01	RHN39330.1	86.567	67	9	0	5	71	160	226	1.54E-31	121

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042598.01.T01	P27347	47.222	72	35	1	21	92	31	99	1.40E-15	70.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042598.01.T01	A0A396GDP9	86.567	67	9	0	5	71	160	226	7.33e-32	121

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TFs/TRs:

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Gene ID	Type	Classification
MsG0880042598.01.T01	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042598.01.T01	MTR_8g018100	86.567	67	9	0	5	71	180	246	4.20e-35	120
MsG0880042598.01.T01	MTR_1g115220	80.519	77	15	0	5	81	76	152	2.30e-30	107
MsG0880042598.01.T01	MTR_3g115580	47.826	69	36	0	18	86	32	100	2.79e-16	70.1
MsG0880042598.01.T01	MTR_7g068280	47.458	59	31	0	27	85	47	105	1.62e-13	63.2
MsG0880042598.01.T01	MTR_5g024180	38.554	83	44	2	15	93	16	95	1.31e-12	60.5
MsG0880042598.01.T01	MTR_8g073345	40.278	72	38	1	15	81	16	87	3.88e-12	58.9
MsG0880042598.01.T01	MTR_8g073345	40.278	72	38	1	15	81	16	87	5.42e-12	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042598.01.T01	AT4G35570	47.692	65	34	0	22	86	25	89	1.06e-15	67.8
MsG0880042598.01.T01	AT4G35570	47.692	65	34	0	22	86	25	89	1.06e-15	67.8
MsG0880042598.01.T01	AT3G51880	41.558	77	44	1	5	81	28	103	1.11e-12	60.8
MsG0880042598.01.T01	AT1G20696	44.928	69	37	1	13	81	18	85	1.18e-12	60.5
MsG0880042598.01.T01	AT3G51880	41.558	77	44	1	5	81	28	103	1.62e-12	60.8
MsG0880042598.01.T01	AT1G20693	42.029	69	39	1	19	86	25	93	1.81e-12	60.1
MsG0880042598.01.T01	AT1G20693	42.029	69	39	1	19	86	25	93	1.84e-12	60.1
MsG0880042598.01.T01	AT3G51880	41.558	77	44	1	5	81	28	103	2.10e-12	60.5
MsG0880042598.01.T01	AT3G51880	41.558	77	44	1	5	81	28	103	2.10e-12	60.5
MsG0880042598.01.T01	AT3G51880	41.558	77	44	1	5	81	28	103	2.10e-12	60.5

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Find 23 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGACTAAAGTTGGGAA+AGG	0.588435	8:+11256378	MsG0880042598.01.T01:CDS
AAAGGTTAAGGATTCTAATG+CGG	0.688426	8:+11256404	MsG0880042598.01.T01:CDS
AACGGACTAAAGTTGGGAAA+GGG	0.587037	8:+11256379	MsG0880042598.01.T01:CDS
AATCGTTTGAGGGATTTAAG+AGG	0.511108	8:+11256890	MsG0880042598.01.T01:CDS
ACAAGACTTGCAAAGAGAGT+GGG	0.547118	8:-11256937	None:intergenic
ACTGCGAAACGGACTAAAGT+TGG	0.477591	8:+11256372	MsG0880042598.01.T01:CDS
ACTTTAGTCCGTTTCGCAGT+TGG	0.458641	8:-11256369	None:intergenic
AGGAAGATTGCGAGAAGTGG+AGG	0.614149	8:+11256711	MsG0880042598.01.T01:CDS
ATCTTGATTCAAAGGATGTT+AGG	0.404379	8:+11256579	MsG0880042598.01.T01:CDS
ATGAAAAGAAAGAAATCAGT+TGG	0.544749	8:-11256438	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTTAAGGATTCTAATG+CGG	+	Chr8:11256404-11256423	MsG0880042598.01.T01:CDS	30.0%
ATCTTGATTCAAAGGATGTT+AGG	+	Chr8:11256579-11256598	MsG0880042598.01.T01:CDS	30.0%
ATGCAAAAACTAGATTGGTA+AGG	+	Chr8:11256691-11256710	MsG0880042598.01.T01:intron	30.0%
TGCACCAAATTCAATCAAAA+CGG	-	Chr8:11256777-11256796	None:intergenic	30.0%
AATCGTTTGAGGGATTTAAG+AGG	+	Chr8:11256890-11256909	MsG0880042598.01.T01:CDS	35.0%
CCAAAATTGCAATCGTTTGA+GGG	+	Chr8:11256880-11256899	MsG0880042598.01.T01:CDS	35.0%
GGAAGCTAATCTTGATTCAA+AGG	+	Chr8:11256571-11256590	MsG0880042598.01.T01:CDS	35.0%
GTGTTATGTTTATGTGATGC+TGG	+	Chr8:11256799-11256818	MsG0880042598.01.T01:intron	35.0%
TAAAGTTGGGAAAGGGAAAA+AGG	+	Chr8:11256386-11256405	MsG0880042598.01.T01:CDS	35.0%
TCCAAAATTGCAATCGTTTG+AGG	+	Chr8:11256879-11256898	MsG0880042598.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	11256336	11256961	11256336	ID=MsG0880042598.01;Name=MsG0880042598.01
Chr8	mRNA	11256336	11256961	11256336	ID=MsG0880042598.01.T01;Parent=MsG0880042598.01;Name=MsG0880042598.01.T01;_AED=0.66;_eAED=0.66;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|111
Chr8	exon	11256336	11256460	11256336	ID=MsG0880042598.01.T01:exon:36482;Parent=MsG0880042598.01.T01
Chr8	exon	11256547	11256604	11256547	ID=MsG0880042598.01.T01:exon:36483;Parent=MsG0880042598.01.T01
Chr8	exon	11256704	11256748	11256704	ID=MsG0880042598.01.T01:exon:36484;Parent=MsG0880042598.01.T01
Chr8	exon	11256854	11256961	11256854	ID=MsG0880042598.01.T01:exon:36485;Parent=MsG0880042598.01.T01
Chr8	CDS	11256336	11256460	11256336	ID=MsG0880042598.01.T01:cds;Parent=MsG0880042598.01.T01
Chr8	CDS	11256547	11256604	11256547	ID=MsG0880042598.01.T01:cds;Parent=MsG0880042598.01.T01
Chr8	CDS	11256704	11256748	11256704	ID=MsG0880042598.01.T01:cds;Parent=MsG0880042598.01.T01
Chr8	CDS	11256854	11256961	11256854	ID=MsG0880042598.01.T01:cds;Parent=MsG0880042598.01.T01

Gene Sequence	>MsG0880042598.01.T01 TTGGAATTTTGTAGGAAGCCAAATTCAAAAGAACCAACTGCGAAACGGACTAAAGTTGGGAAAGGGAAAAAGGTTAAGGATTCTAATGCGGCGAAGCGTTCACCAACTGATTTCTTTCTTTTCATGGATGAGTTTAGAAAGACTTTTAAGGAAGCTAATCTTGATTCAAAGGATGTTAGGAGGATTGGTAAGGAAGATTGCGAGAAGTGGAGGTCTTTGACTGAGGAAGAGAAGAAGCCTTTTAAGATGCAAGTCCAAAATTGCAATCGTTTGAGGGATTTAAGAGGCAATTTGGAAAGAATAAAGATTTTCCCACTCTCTTTGCAAGTCTTGTAA
Protein sequence	>MsG0880042598.01.T01 LEFCRKPNSKEPTAKRTKVGKGKKVKDSNAAKRSPTDFFLFMDEFRKTFKEANLDSKDVRRIGKEDCEKWRSLTEEEKKPFKMQVQNCNRLRDLRGNLERIKIFPLSLQVL*