AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042867.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042867.01.T01 MTR_8g023880 81.699 153 27 1 1 153 7 158 6.46e-89 261
MsG0880042867.01.T01 MTR_8g023860 54.487 156 54 5 1 153 12 153 2.45e-48 161
MsG0880042867.01.T01 MTR_8g023840 56.944 144 46 4 1 142 11 140 2.82e-47 158
MsG0880042867.01.T01 MTR_8g023900 53.191 141 50 4 3 141 195 321 2.37e-41 144
MsG0880042867.01.T01 MTR_8g023900 48.951 143 57 4 1 141 12 140 4.76e-38 135
MsG0880042867.01.T01 MTR_8g023930 50.000 148 58 4 1 146 24 157 8.49e-41 142
MsG0880042867.01.T01 MTR_3g093040 44.295 149 63 7 1 146 108 239 1.12e-32 118
MsG0880042867.01.T01 MTR_5g069030 46.154 143 57 5 1 140 25 150 1.48e-32 122
MsG0880042867.01.T01 MTR_3g093050 48.252 143 54 7 1 140 22 147 1.57e-31 119
MsG0880042867.01.T01 MTR_3g093050 48.252 143 54 7 1 140 22 147 1.64e-31 119
MsG0880042867.01.T01 MTR_2g086880 45.000 140 56 7 4 140 21 142 2.54e-29 112
MsG0880042867.01.T01 MTR_2g086880 45.000 140 56 7 4 140 21 142 3.97e-29 112
MsG0880042867.01.T01 MTR_5g076850 41.958 143 63 5 1 140 6 131 4.40e-27 106
MsG0880042867.01.T01 MTR_1g090723 42.857 140 61 5 4 140 11 134 5.89e-27 105
MsG0880042867.01.T01 MTR_1g090723 42.857 140 61 5 4 140 11 134 8.65e-27 105
MsG0880042867.01.T01 MTR_1g090723 42.857 140 61 5 4 140 11 134 8.89e-27 105
MsG0880042867.01.T01 MTR_2g064090 41.259 143 64 5 1 140 6 131 1.30e-26 103
MsG0880042867.01.T01 MTR_6g084430 41.259 143 62 5 1 140 5 128 1.86e-26 102
MsG0880042867.01.T01 MTR_2g078700 41.958 143 63 4 1 140 23 148 1.86e-26 103
MsG0880042867.01.T01 MTR_3g096140 42.143 140 61 5 4 140 10 132 2.09e-26 101
MsG0880042867.01.T01 MTR_3g070030 45.775 142 55 8 2 140 20 142 2.09e-26 102
MsG0880042867.01.T01 MTR_8g063550 39.286 140 65 5 4 140 9 131 3.41e-26 101
MsG0880042867.01.T01 MTR_4g108760 46.154 143 55 8 1 140 17 140 4.87e-26 101
MsG0880042867.01.T01 MTR_3g064580 41.958 143 63 5 1 140 6 131 7.62e-26 102
MsG0880042867.01.T01 MTR_8g063550 39.286 140 65 5 4 140 9 131 7.64e-26 102
MsG0880042867.01.T01 MTR_8g063550 39.286 140 65 5 4 140 9 131 9.42e-26 101
MsG0880042867.01.T01 MTR_1g008740 43.357 143 62 5 1 140 13 139 1.07e-25 100
MsG0880042867.01.T01 MTR_8g093580 39.286 140 65 5 4 140 9 131 1.15e-25 102
MsG0880042867.01.T01 MTR_3g096140 41.958 143 63 5 1 140 7 132 1.20e-25 100
MsG0880042867.01.T01 MTR_1g008740 43.357 143 62 5 1 140 27 153 1.27e-25 100
MsG0880042867.01.T01 MTR_6g477900 42.657 143 62 5 1 140 6 131 1.34e-25 98.2
MsG0880042867.01.T01 MTR_6g012670 44.056 143 58 7 1 140 20 143 1.52e-25 99.8
MsG0880042867.01.T01 MTR_0036s0150 40.000 140 65 4 4 140 8 131 1.65e-25 101
MsG0880042867.01.T01 MTR_3g435150 45.455 143 56 8 1 140 16 139 2.34e-25 99.0
MsG0880042867.01.T01 MTR_3g109340 41.958 143 63 5 1 140 22 147 3.41e-25 99.4
MsG0880042867.01.T01 MTR_3g109340 41.958 143 63 5 1 140 22 147 3.52e-25 99.4
MsG0880042867.01.T01 MTR_3g088110 39.474 152 69 6 1 149 7 138 4.45e-25 97.8
MsG0880042867.01.T01 MTR_2g080010 40.559 143 65 5 1 140 15 140 4.57e-25 99.0
MsG0880042867.01.T01 MTR_5g014300 39.073 151 69 5 1 143 6 141 5.75e-25 98.6
MsG0880042867.01.T01 MTR_6g032770 41.958 143 63 6 1 140 18 143 1.12e-24 98.2
MsG0880042867.01.T01 MTR_4g089135 40.559 143 65 5 1 140 15 140 1.49e-24 97.4
MsG0880042867.01.T01 MTR_4g098630 38.194 144 70 4 1 140 6 134 2.94e-24 96.3
MsG0880042867.01.T01 MTR_7g085260 43.448 145 60 7 1 140 17 144 6.48e-24 96.3
MsG0880042867.01.T01 MTR_3g116070 35.897 156 78 4 1 150 23 162 1.01e-23 95.5
MsG0880042867.01.T01 MTR_1g097300 37.255 153 75 6 1 150 20 154 1.23e-23 96.7
MsG0880042867.01.T01 MTR_5g012080 39.583 144 67 6 1 140 7 134 2.48e-23 94.4
MsG0880042867.01.T01 MTR_1g069805 37.762 143 69 5 1 140 10 135 3.02e-23 92.8
MsG0880042867.01.T01 MTR_7g011130 45.000 140 55 8 4 140 22 142 3.48e-23 94.0
MsG0880042867.01.T01 MTR_3g096920 40.559 143 62 6 1 140 7 129 3.69e-23 92.8
MsG0880042867.01.T01 MTR_8g099750 37.762 143 67 6 1 140 14 137 4.41e-23 91.3
MsG0880042867.01.T01 MTR_7g005280 39.860 143 63 5 1 140 15 137 4.77e-23 92.0
MsG0880042867.01.T01 MTR_3g096920 40.559 143 62 6 1 140 7 129 7.66e-23 92.8
MsG0880042867.01.T01 MTR_7g097090 37.762 143 69 5 1 140 10 135 1.71e-22 91.3
MsG0880042867.01.T01 MTR_4g052620 36.735 147 73 5 1 142 5 136 2.95e-22 90.1
MsG0880042867.01.T01 MTR_7g011120 44.286 140 56 8 4 140 11 131 3.29e-22 90.9
MsG0880042867.01.T01 MTR_4g081870 38.462 143 66 6 1 140 9 132 4.25e-22 89.7
MsG0880042867.01.T01 MTR_8g094580 39.860 143 63 6 1 140 7 129 4.48e-22 90.1
MsG0880042867.01.T01 MTR_2157s0010 38.194 144 68 6 1 140 8 134 5.71e-22 89.4
MsG0880042867.01.T01 MTR_2g064470 39.161 143 63 5 1 140 11 132 6.24e-22 89.7
MsG0880042867.01.T01 MTR_1g090720 40.000 140 64 5 4 140 45 167 8.09e-22 91.3
MsG0880042867.01.T01 MTR_4g101680 37.500 144 69 6 1 140 7 133 9.10e-22 90.1
MsG0880042867.01.T01 MTR_7g100990 38.462 143 68 6 1 140 11 136 1.23e-21 89.4
MsG0880042867.01.T01 MTR_7g085220 37.333 150 67 6 1 140 8 140 2.46e-21 88.6
MsG0880042867.01.T01 MTR_2g086690 37.241 145 70 6 2 140 5 134 2.57e-21 87.4
MsG0880042867.01.T01 MTR_8g059170 39.860 143 64 6 1 140 14 137 2.88e-21 88.6
MsG0880042867.01.T01 MTR_7g105170 39.041 146 68 7 1 140 4 134 4.92e-21 86.7
MsG0880042867.01.T01 MTR_3g070040 42.553 141 56 7 3 140 10 128 7.34e-21 87.4
MsG0880042867.01.T01 MTR_4g036030 36.111 144 71 6 1 140 7 133 1.91e-20 86.3
MsG0880042867.01.T01 MTR_2g079990 39.161 143 65 6 1 140 16 139 1.95e-20 86.7
MsG0880042867.01.T01 MTR_4g134460 40.559 143 63 7 1 140 55 178 1.96e-20 87.0
MsG0880042867.01.T01 MTR_2g079990 39.161 143 65 6 1 140 16 139 2.05e-20 86.3
MsG0880042867.01.T01 MTR_5g041940 37.762 143 67 6 1 140 3 126 3.88e-20 84.3
MsG0880042867.01.T01 MTR_6g011860 39.161 143 65 7 1 140 16 139 7.73e-20 85.1
MsG0880042867.01.T01 MTR_8g467490 36.429 140 69 6 4 140 17 139 7.76e-20 85.1
MsG0880042867.01.T01 MTR_1g096430 36.000 150 75 6 1 146 7 139 1.20e-19 84.3
MsG0880042867.01.T01 MTR_2g093810 35.664 143 72 5 1 140 14 139 1.90e-19 83.6
MsG0880042867.01.T01 MTR_4g075980 38.298 141 66 6 4 140 18 141 2.35e-19 82.8
MsG0880042867.01.T01 MTR_5g021710 34.722 144 73 6 1 140 8 134 2.55e-19 83.6
MsG0880042867.01.T01 MTR_8g076110 34.722 144 73 6 1 140 6 132 3.08e-19 82.8
MsG0880042867.01.T01 MTR_2g068880 38.732 142 66 7 4 140 25 150 4.83e-19 82.0
MsG0880042867.01.T01 MTR_3g096140 39.370 127 57 5 17 140 2 111 5.75e-19 82.4
MsG0880042867.01.T01 MTR_2g068920 38.028 142 67 7 4 140 24 149 6.02e-19 81.6
MsG0880042867.01.T01 MTR_5g040420 35.000 140 71 5 4 140 17 139 7.20e-19 82.4
MsG0880042867.01.T01 MTR_3g098810 35.172 145 70 7 1 140 14 139 4.65e-18 77.0
MsG0880042867.01.T01 MTR_4g035590 36.806 144 70 6 1 140 8 134 9.23e-18 79.0
MsG0880042867.01.T01 MTR_2g062730 36.111 144 72 6 1 140 10 137 3.14e-17 77.4
MsG0880042867.01.T01 MTR_3g098810 35.172 145 70 7 1 140 14 139 3.18e-17 76.3
MsG0880042867.01.T01 MTR_5g090970 38.298 141 66 7 4 140 21 144 9.90e-17 75.9
MsG0880042867.01.T01 MTR_8g024480 34.028 144 74 6 1 140 15 141 2.51e-16 75.5
MsG0880042867.01.T01 MTR_5g090970 36.879 141 67 7 4 140 21 143 1.90e-15 72.4
MsG0880042867.01.T01 MTR_4g094302 30.822 146 67 6 1 140 11 128 2.38e-14 67.0
MsG0880042867.01.T01 MTR_4g094302 30.822 146 67 6 1 140 11 128 4.18e-14 67.0
MsG0880042867.01.T01 MTR_7g083330 29.371 143 79 5 1 140 18 141 3.37e-13 64.7
MsG0880042867.01.T01 MTR_8g093790 34.043 141 61 5 1 141 10 118 8.84e-13 63.5
MsG0880042867.01.T01 MTR_7g083360 28.671 143 80 5 1 140 10 133 2.84e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042867.01.T01 AT4G35580 47.651 149 58 5 1 146 9 140 6.00e-38 136
MsG0880042867.01.T01 AT4G35580 47.651 149 58 5 1 146 9 140 6.22e-38 135
MsG0880042867.01.T01 AT4G35580 47.651 149 58 5 1 146 9 140 6.57e-38 135
MsG0880042867.01.T01 AT1G33060 48.026 152 57 7 1 149 24 156 1.15e-36 133
MsG0880042867.01.T01 AT1G33060 48.026 152 57 7 1 149 24 156 1.34e-36 133
MsG0880042867.01.T01 AT5G24590 43.624 149 65 5 1 146 13 145 2.79e-30 114
MsG0880042867.01.T01 AT3G49530 41.611 149 68 5 1 146 13 145 6.18e-30 112
MsG0880042867.01.T01 AT3G49530 41.611 149 68 5 1 146 13 145 6.52e-30 113
MsG0880042867.01.T01 AT3G10490 42.857 140 60 5 4 140 30 152 8.22e-30 109
MsG0880042867.01.T01 AT4G01520 40.690 145 67 4 2 141 5 135 1.08e-29 110
MsG0880042867.01.T01 AT4G17980 40.559 143 67 4 1 140 6 133 3.41e-29 108
MsG0880042867.01.T01 AT4G01540 42.361 144 64 4 3 141 6 135 3.75e-29 110
MsG0880042867.01.T01 AT4G01540 42.361 144 64 4 3 141 6 135 4.73e-29 110
MsG0880042867.01.T01 AT4G01540 42.361 144 64 4 3 141 6 135 5.15e-29 111
MsG0880042867.01.T01 AT3G10480 44.286 140 58 5 4 140 30 152 5.22e-29 110
MsG0880042867.01.T01 AT3G10480 44.286 140 58 5 4 140 30 152 5.43e-29 110
MsG0880042867.01.T01 AT4G01540 42.361 144 64 4 3 141 6 135 6.06e-29 110
MsG0880042867.01.T01 AT4G01550 44.056 143 62 4 3 141 6 134 7.58e-29 110
MsG0880042867.01.T01 AT4G17980 40.559 143 67 4 1 140 6 133 8.07e-29 107
MsG0880042867.01.T01 AT3G10490 42.857 140 60 5 4 140 30 152 9.09e-29 110
MsG0880042867.01.T01 AT1G02230 39.860 143 70 4 2 142 4 132 5.09e-28 107
MsG0880042867.01.T01 AT3G15170 43.357 143 61 4 1 140 20 145 6.76e-28 105
MsG0880042867.01.T01 AT5G04410 43.243 148 64 4 4 148 12 142 7.99e-28 108
MsG0880042867.01.T01 AT5G53950 41.958 143 63 4 1 140 17 142 2.00e-27 105
MsG0880042867.01.T01 AT5G17260 42.657 143 62 5 1 140 6 131 8.06e-27 105
MsG0880042867.01.T01 AT5G22290 40.123 162 67 8 4 162 24 158 1.07e-26 103
MsG0880042867.01.T01 AT1G01720 41.447 152 66 6 1 149 7 138 2.09e-26 101
MsG0880042867.01.T01 AT3G17730 42.657 143 62 5 1 140 6 131 2.59e-26 100
MsG0880042867.01.T01 AT5G61430 44.755 143 57 8 1 140 16 139 2.83e-26 102
MsG0880042867.01.T01 AT3G18400 38.596 171 77 7 1 162 5 156 3.35e-26 101
MsG0880042867.01.T01 AT1G65910 42.657 143 62 5 1 140 6 131 4.92e-26 103
MsG0880042867.01.T01 AT5G46590 39.860 143 67 5 1 140 6 132 5.74e-26 100
MsG0880042867.01.T01 AT5G46590 39.860 143 67 5 1 140 6 132 6.55e-26 100
MsG0880042867.01.T01 AT2G27300 40.000 140 63 6 4 140 17 138 1.00e-25 100
MsG0880042867.01.T01 AT3G44290 44.286 140 57 7 4 140 17 138 1.04e-25 98.2
MsG0880042867.01.T01 AT2G24430 41.958 143 63 5 1 140 16 141 1.46e-25 99.8
MsG0880042867.01.T01 AT2G24430 41.958 143 63 5 1 140 16 141 1.46e-25 99.8
MsG0880042867.01.T01 AT5G39610 46.154 143 55 8 1 140 20 143 3.59e-25 98.2
MsG0880042867.01.T01 AT3G10500 43.571 140 59 4 4 140 12 134 3.92e-25 100
MsG0880042867.01.T01 AT5G18270 44.056 143 59 7 1 140 21 145 4.32e-25 99.0
MsG0880042867.01.T01 AT3G44290 44.286 140 57 7 4 140 17 138 7.64e-25 98.2
MsG0880042867.01.T01 AT1G02250 39.456 147 71 4 2 145 4 135 1.17e-24 98.2
MsG0880042867.01.T01 AT5G07680 44.056 143 58 8 1 140 3 126 1.38e-24 97.1
MsG0880042867.01.T01 AT5G07680 44.056 143 58 8 1 140 17 140 1.75e-24 97.1
MsG0880042867.01.T01 AT3G29035 45.455 143 56 8 1 140 24 147 3.31e-24 96.3
MsG0880042867.01.T01 AT3G04060 41.958 143 62 7 1 140 20 144 3.38e-24 96.7
MsG0880042867.01.T01 AT1G34190 40.714 140 63 5 4 140 19 141 3.39e-24 98.2
MsG0880042867.01.T01 AT5G18270 42.657 143 61 7 1 140 21 145 4.87e-24 95.9
MsG0880042867.01.T01 AT3G03200 40.559 143 65 5 1 140 6 131 4.96e-24 97.4
MsG0880042867.01.T01 AT5G08790 37.662 154 73 6 1 151 7 140 9.45e-24 94.4
MsG0880042867.01.T01 AT1G77450 40.397 151 67 6 2 149 11 141 1.18e-23 93.6
MsG0880042867.01.T01 AT1G34180 43.571 140 59 6 4 140 19 141 1.46e-23 96.3
MsG0880042867.01.T01 AT1G54330 41.958 143 63 5 1 140 6 131 1.94e-23 94.0
MsG0880042867.01.T01 AT3G10480 35.838 173 58 6 4 140 30 185 6.03e-23 94.7
MsG0880042867.01.T01 AT1G34180 43.571 140 59 6 4 140 19 141 7.08e-23 94.0
MsG0880042867.01.T01 AT1G32510 39.865 148 66 6 1 140 6 138 1.46e-22 91.3
MsG0880042867.01.T01 AT3G15500 40.559 143 63 6 1 140 14 137 1.74e-22 91.7
MsG0880042867.01.T01 AT5G39820 39.286 140 65 5 4 140 23 145 2.14e-22 91.7
MsG0880042867.01.T01 AT1G76420 34.839 155 79 5 1 150 22 159 2.36e-22 91.7
MsG0880042867.01.T01 AT2G17040 38.298 141 66 5 4 140 9 132 2.72e-22 90.5
MsG0880042867.01.T01 AT4G27410 39.860 143 64 6 1 140 14 137 2.82e-22 90.9
MsG0880042867.01.T01 AT3G04070 39.726 146 65 6 1 140 10 138 3.59e-22 91.3
MsG0880042867.01.T01 AT5G13180 37.762 143 66 5 1 140 14 136 3.70e-22 89.7
MsG0880042867.01.T01 AT3G04070 39.726 146 65 6 1 140 10 138 5.47e-22 90.9
MsG0880042867.01.T01 AT1G69490 37.063 143 68 6 1 140 9 132 1.11e-21 88.6
MsG0880042867.01.T01 AT3G04420 37.931 145 70 5 2 142 4 132 1.22e-21 89.0
MsG0880042867.01.T01 AT3G04420 37.931 145 70 5 2 142 4 132 1.39e-21 89.4
MsG0880042867.01.T01 AT5G04395 32.184 174 88 6 1 159 28 186 1.65e-21 86.3
MsG0880042867.01.T01 AT1G26870 38.571 140 66 5 4 140 19 141 1.86e-21 89.7
MsG0880042867.01.T01 AT5G63790 37.762 143 66 6 1 140 50 172 1.99e-21 88.6
MsG0880042867.01.T01 AT1G52890 39.860 143 64 6 1 140 14 137 2.14e-21 88.6
MsG0880042867.01.T01 AT5G63790 37.762 143 66 6 1 140 60 182 2.27e-21 88.6
MsG0880042867.01.T01 AT3G12910 38.732 142 65 7 4 140 24 148 3.12e-21 88.2
MsG0880042867.01.T01 AT2G33480 38.462 143 63 6 1 140 15 135 4.55e-21 87.0
MsG0880042867.01.T01 AT2G33480 38.462 143 63 6 1 140 15 135 4.55e-21 87.0
MsG0880042867.01.T01 AT1G61110 40.000 145 62 7 1 140 16 140 5.84e-21 87.4
MsG0880042867.01.T01 AT5G64530 36.429 140 63 5 1 140 3 116 7.92e-21 84.0
MsG0880042867.01.T01 AT4G27410 36.076 158 66 6 1 140 14 154 1.11e-20 86.7
MsG0880042867.01.T01 AT2G02450 39.161 143 65 7 1 140 52 175 1.11e-20 87.4
MsG0880042867.01.T01 AT1G56010 36.364 143 70 4 1 140 19 143 1.17e-20 86.7
MsG0880042867.01.T01 AT2G02450 39.161 143 65 7 1 140 52 175 1.52e-20 87.4
MsG0880042867.01.T01 AT1G71930 35.417 144 72 6 1 140 9 135 1.68e-20 86.3
MsG0880042867.01.T01 AT1G71930 35.417 144 72 6 1 140 9 135 1.68e-20 86.3
MsG0880042867.01.T01 AT1G34180 40.132 152 59 7 4 140 19 153 1.69e-20 87.8
MsG0880042867.01.T01 AT5G09330 40.714 140 63 6 4 140 9 131 2.14e-20 87.4
MsG0880042867.01.T01 AT5G09330 40.714 140 63 6 4 140 9 131 2.14e-20 87.4
MsG0880042867.01.T01 AT5G09330 40.714 140 63 6 4 140 9 131 2.14e-20 87.4
MsG0880042867.01.T01 AT5G09330 40.714 140 63 6 4 140 9 131 2.14e-20 87.4
MsG0880042867.01.T01 AT5G09330 40.714 140 63 6 4 140 9 131 2.14e-20 87.4
MsG0880042867.01.T01 AT3G15510 37.410 139 67 5 5 140 21 142 2.18e-20 86.7
MsG0880042867.01.T01 AT5G64530 36.429 140 63 5 1 140 3 116 2.33e-20 83.6
MsG0880042867.01.T01 AT1G34180 40.132 152 59 7 4 140 19 153 9.23e-20 85.5
MsG0880042867.01.T01 AT5G62380 36.111 144 71 6 1 140 7 133 1.29e-19 84.3
MsG0880042867.01.T01 AT5G62380 36.111 144 71 6 1 140 7 133 1.29e-19 84.3
MsG0880042867.01.T01 AT3G61910 34.722 144 73 6 1 140 11 137 1.34e-19 84.0
MsG0880042867.01.T01 AT5G66300 34.247 146 75 6 1 142 12 140 1.38e-19 83.6
MsG0880042867.01.T01 AT1G12260 35.417 144 72 6 1 140 7 133 1.39e-19 84.0
MsG0880042867.01.T01 AT4G36160 35.417 144 72 6 1 140 10 136 1.68e-19 84.3
MsG0880042867.01.T01 AT4G36160 35.417 144 72 6 1 140 10 136 1.68e-19 84.3
MsG0880042867.01.T01 AT4G36160 35.417 144 72 6 1 140 14 140 1.69e-19 84.3
MsG0880042867.01.T01 AT1G62700 36.806 144 70 6 1 140 7 133 2.08e-19 84.0
MsG0880042867.01.T01 AT1G62700 36.806 144 70 6 1 140 7 133 2.08e-19 84.0
MsG0880042867.01.T01 AT2G43000 37.589 141 64 8 4 140 21 141 2.15e-19 82.8
MsG0880042867.01.T01 AT1G12260 35.417 144 72 6 1 140 7 133 2.41e-19 84.0
MsG0880042867.01.T01 AT4G28530 34.356 163 63 6 1 140 10 151 2.92e-19 83.2
MsG0880042867.01.T01 AT3G44350 33.103 145 77 5 1 140 5 134 4.87e-19 79.3
MsG0880042867.01.T01 AT5G22380 36.301 146 72 6 3 142 7 137 1.15e-18 80.1
MsG0880042867.01.T01 AT2G18060 35.616 146 69 7 1 140 9 135 1.42e-18 81.6
MsG0880042867.01.T01 AT2G18060 35.616 146 69 7 1 140 9 135 1.42e-18 81.6
MsG0880042867.01.T01 AT3G04430 36.913 149 64 6 7 142 6 137 1.53e-18 79.0
MsG0880042867.01.T01 AT1G01010 36.242 149 69 5 3 141 5 137 1.89e-18 81.6
MsG0880042867.01.T01 AT1G32870 37.333 150 72 5 4 150 13 143 2.97e-18 81.3
MsG0880042867.01.T01 AT3G44350 31.034 145 80 4 1 140 5 134 3.21e-18 79.0
MsG0880042867.01.T01 AT1G32870 37.333 150 72 5 4 150 13 143 3.32e-18 80.9
MsG0880042867.01.T01 AT3G12977 36.111 144 68 7 1 140 18 141 3.42e-18 79.3
MsG0880042867.01.T01 AT1G33280 33.766 154 81 6 1 150 8 144 1.00e-17 78.6
MsG0880042867.01.T01 AT1G02220 35.461 141 74 4 2 141 4 128 2.04e-17 78.6
MsG0880042867.01.T01 AT1G32870 37.333 150 72 5 4 150 49 179 2.37e-17 78.6
MsG0880042867.01.T01 AT5G64060 37.143 140 68 7 4 140 9 131 2.48e-17 78.2
MsG0880042867.01.T01 AT2G46770 34.028 144 74 6 1 140 16 142 5.24e-17 77.0
MsG0880042867.01.T01 AT4G10350 35.417 144 72 6 1 140 9 135 5.63e-17 77.0
MsG0880042867.01.T01 AT1G79580 33.333 153 82 6 1 149 17 153 2.36e-16 75.5
MsG0880042867.01.T01 AT1G79580 33.333 153 82 6 1 149 17 153 2.36e-16 75.5
MsG0880042867.01.T01 AT1G79580 33.333 153 82 6 1 149 17 153 2.36e-16 75.5
MsG0880042867.01.T01 AT1G79580 33.333 153 82 6 1 149 17 153 2.36e-16 75.5
MsG0880042867.01.T01 AT1G79580 33.333 153 82 6 1 149 17 153 2.36e-16 75.5
MsG0880042867.01.T01 AT5G14000 32.903 155 77 6 1 149 15 148 1.24e-15 70.5
MsG0880042867.01.T01 AT5G14000 32.903 155 77 6 1 149 15 148 4.91e-15 69.7
MsG0880042867.01.T01 AT1G32770 33.333 144 75 6 1 140 16 142 1.04e-14 70.5
MsG0880042867.01.T01 AT1G52880 37.063 143 64 7 5 140 21 144 8.16e-14 67.8
MsG0880042867.01.T01 AT5G61430 46.154 91 30 6 53 140 2 76 3.55e-12 63.2
MsG0880042867.01.T01 AT4G29230 29.870 154 89 6 1 141 47 194 3.59e-11 60.8
MsG0880042867.01.T01 AT4G29230 29.870 154 89 6 1 141 48 195 3.59e-11 60.8
MsG0880042867.01.T01 AT4G29230 29.870 154 89 6 1 141 48 195 6.34e-11 60.1

Find 27 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTTCGGTTTCGGGTT+TGG 0.220579 8:-15058718 None:intergenic
CCAATAACCATCTTCGGTTT+TGG 0.242020 8:-15058736 None:intergenic
CCAAAACCGAAGATGGTTAT+TGG 0.272954 8:+15058736 MsG0880042867.01.T01:CDS
TACCAAGCAACTTGTGATTT+AGG 0.276773 8:-15058384 None:intergenic
TTGGTTTCGGTTTCGGGTTT+GGG 0.281480 8:-15058717 None:intergenic
CTATGCACCATGGGATTTAC+CGG 0.320849 8:+15058453 MsG0880042867.01.T01:CDS
AAAGGTACCAACATTGTTAT+AGG 0.339234 8:+15058792 MsG0880042867.01.T01:CDS
TGTTGAACTTTATGAGTTCA+AGG 0.385509 8:-15058656 None:intergenic
ATCAACATGAAAAGACCAAC+TGG 0.400465 8:+15058844 MsG0880042867.01.T01:CDS
GGTCTGAATCTATAACCTAT+AGG 0.416888 8:-15058334 None:intergenic
GATCTTCCAATAACCATCTT+CGG 0.420218 8:-15058742 None:intergenic
AGCATTGTCCAAGGTGAAAT+CGG 0.446186 8:+15058605 MsG0880042867.01.T01:intron
CTCACAAGTTCTTGATCTGT+TGG 0.457501 8:-15058355 None:intergenic
ACCGAAACCAAAACCGAAGA+TGG 0.482591 8:+15058729 MsG0880042867.01.T01:CDS
TACCTAAATCACAAGTTGCT+TGG 0.491048 8:+15058382 MsG0880042867.01.T01:CDS
GATCGTGAAATCAAGACAAA+AGG 0.495582 8:+15058774 MsG0880042867.01.T01:CDS
ACCTCAACTTCAATGCCTAT+AGG 0.499800 8:+15058319 None:intergenic
TGAAATCGGATGACAAAGAA+TGG 0.513259 8:+15058619 MsG0880042867.01.T01:CDS
CGTGTTATTAGCATTGTCCA+AGG 0.553292 8:+15058596 MsG0880042867.01.T01:intron
GATGGTTATTGGAAGATCAC+TGG 0.556928 8:+15058747 MsG0880042867.01.T01:CDS
ATCTTACCCGGTAAATCCCA+TGG 0.558835 8:-15058460 None:intergenic
TTTGTCATCCGATTTCACCT+TGG 0.579656 8:-15058613 None:intergenic
TAGTTTAAAAGTTGAACATG+AGG 0.608519 8:-15058433 None:intergenic
ATACTCATGCATAACCCAGT+TGG 0.622164 8:-15058859 None:intergenic
TATGCACCATGGGATTTACC+GGG 0.653252 8:+15058454 MsG0880042867.01.T01:CDS
AGTTCAACAAAAGCAAACCA+AGG 0.659742 8:+15058670 MsG0880042867.01.T01:CDS
TCAACATGAAAAGACCAACT+GGG 0.701563 8:+15058845 MsG0880042867.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTTGCATTG+AGG - Chr8:15058499-15058518 None:intergenic 15.0%
!!! TGCTTTATTTTATTTTGAAA+AGG + Chr8:15058914-15058933 MsG0880042867.01.T01:CDS 15.0%
!! TTTAATGGGGTTATATTAAA+TGG + Chr8:15058540-15058559 MsG0880042867.01.T01:intron 20.0%
!!! TTAGTTTTTCTATTAAACCT+TGG - Chr8:15058690-15058709 None:intergenic 20.0%
! TAATATAACCCCATTAAAGT+AGG - Chr8:15058538-15058557 None:intergenic 25.0%
! TAGTTTAAAAGTTGAACATG+AGG - Chr8:15058436-15058455 None:intergenic 25.0%
!! ACATGTTTTCCTACTTTAAT+GGG + Chr8:15058526-15058545 MsG0880042867.01.T01:intron 25.0%
!! TACATGTTTTCCTACTTTAA+TGG + Chr8:15058525-15058544 MsG0880042867.01.T01:intron 25.0%
!! TTCAAACTTTTCTGATAAGA+AGG + Chr8:15058884-15058903 MsG0880042867.01.T01:CDS 25.0%
!! TTTTATGCCTATAACAATGT+TGG - Chr8:15058802-15058821 None:intergenic 25.0%
!!! AAAAAGACTCTTGTTTTCTA+TGG + Chr8:15058819-15058838 MsG0880042867.01.T01:CDS 25.0%
!!! TTTTATTTTTTGCATTGAGG+AGG - Chr8:15058496-15058515 None:intergenic 25.0%
AATGGGGTTATATTAAATGG+TGG + Chr8:15058543-15058562 MsG0880042867.01.T01:intron 30.0%
GGTAGAATATTTATCTTACC+CGG - Chr8:15058475-15058494 None:intergenic 30.0%
TGTTGAACTTTATGAGTTCA+AGG - Chr8:15058659-15058678 None:intergenic 30.0%
! AACTTTTAAACTATGCACCA+TGG + Chr8:15058443-15058462 MsG0880042867.01.T01:CDS 30.0%
! ACTTTTAAACTATGCACCAT+GGG + Chr8:15058444-15058463 MsG0880042867.01.T01:CDS 30.0%
! CATGTTTTCCTACTTTAATG+GGG + Chr8:15058527-15058546 MsG0880042867.01.T01:intron 30.0%
!! AAAGGTACCAACATTGTTAT+AGG + Chr8:15058792-15058811 MsG0880042867.01.T01:CDS 30.0%
AGTTCAACAAAAGCAAACCA+AGG + Chr8:15058670-15058689 MsG0880042867.01.T01:CDS 35.0%
ATCAACATGAAAAGACCAAC+TGG + Chr8:15058844-15058863 MsG0880042867.01.T01:CDS 35.0%
GATCGTGAAATCAAGACAAA+AGG + Chr8:15058774-15058793 MsG0880042867.01.T01:CDS 35.0%
GATCTTCCAATAACCATCTT+CGG - Chr8:15058745-15058764 None:intergenic 35.0%
GGTCTGAATCTATAACCTAT+AGG - Chr8:15058337-15058356 None:intergenic 35.0%
TACCAAGCAACTTGTGATTT+AGG - Chr8:15058387-15058406 None:intergenic 35.0%
TACCTAAATCACAAGTTGCT+TGG + Chr8:15058382-15058401 MsG0880042867.01.T01:CDS 35.0%
TCAACATGAAAAGACCAACT+GGG + Chr8:15058845-15058864 MsG0880042867.01.T01:CDS 35.0%
TGAAATCGGATGACAAAGAA+TGG + Chr8:15058619-15058638 MsG0880042867.01.T01:CDS 35.0%
AGCATTGTCCAAGGTGAAAT+CGG + Chr8:15058605-15058624 MsG0880042867.01.T01:intron 40.0%
ATACTCATGCATAACCCAGT+TGG - Chr8:15058862-15058881 None:intergenic 40.0%
CCAAAACCGAAGATGGTTAT+TGG + Chr8:15058736-15058755 MsG0880042867.01.T01:CDS 40.0%
CTCACAAGTTCTTGATCTGT+TGG - Chr8:15058358-15058377 None:intergenic 40.0%
GATGGTTATTGGAAGATCAC+TGG + Chr8:15058747-15058766 MsG0880042867.01.T01:CDS 40.0%
TTTGTCATCCGATTTCACCT+TGG - Chr8:15058616-15058635 None:intergenic 40.0%
! CCAATAACCATCTTCGGTTT+TGG - Chr8:15058739-15058758 None:intergenic 40.0%
! CGTGTTATTAGCATTGTCCA+AGG + Chr8:15058596-15058615 MsG0880042867.01.T01:intron 40.0%
!!! ACCATCTTCGGTTTTGGTTT+CGG - Chr8:15058733-15058752 None:intergenic 40.0%
!!! TTCGGTTTTGGTTTCGGTTT+CGG - Chr8:15058727-15058746 None:intergenic 40.0%
ACCGAAACCAAAACCGAAGA+TGG + Chr8:15058729-15058748 MsG0880042867.01.T01:CDS 45.0%
ATCTTACCCGGTAAATCCCA+TGG - Chr8:15058463-15058482 None:intergenic 45.0%
CTATGCACCATGGGATTTAC+CGG + Chr8:15058453-15058472 MsG0880042867.01.T01:CDS 45.0%
TATGCACCATGGGATTTACC+GGG + Chr8:15058454-15058473 MsG0880042867.01.T01:CDS 45.0%
!! TTGGTTTCGGTTTCGGGTTT+GGG - Chr8:15058720-15058739 None:intergenic 45.0%
!! TTTGGTTTCGGTTTCGGGTT+TGG - Chr8:15058721-15058740 None:intergenic 45.0%
!!! TCGGTTTTGGTTTCGGTTTC+GGG - Chr8:15058726-15058745 None:intergenic 45.0%
Chromosome Type Strat End Strand Name
Chr8 gene 15058331 15058953 15058331 ID=MsG0880042867.01;Name=MsG0880042867.01
Chr8 mRNA 15058331 15058953 15058331 ID=MsG0880042867.01.T01;Parent=MsG0880042867.01;Name=MsG0880042867.01.T01;_AED=0.52;_eAED=0.52;_QI=0|0|0|1|1|1|2|0|163
Chr8 exon 15058331 15058475 15058331 ID=MsG0880042867.01.T01:exon:481;Parent=MsG0880042867.01.T01
Chr8 exon 15058607 15058953 15058607 ID=MsG0880042867.01.T01:exon:482;Parent=MsG0880042867.01.T01
Chr8 CDS 15058331 15058475 15058331 ID=MsG0880042867.01.T01:cds;Parent=MsG0880042867.01.T01
Chr8 CDS 15058607 15058953 15058607 ID=MsG0880042867.01.T01:cds;Parent=MsG0880042867.01.T01
Gene Sequence

>MsG0880042867.01.T01

ATGCCTATAGGTTATAGATTCAGACCAACAGATCAAGAACTTGTGAGTCACTACCTAAATCACAAGTTGCTTGGTAATGATTCTATTGTCAACAACATAATACCTCATGTTCAACTTTTAAACTATGCACCATGGGATTTACCGGCATTGTCCAAGGTGAAATCGGATGACAAAGAATGGTTTTTCTTCACTTGCCTTGAACTCATAAAGTTCAACAAAAGCAAACCAAGGTTTAATAGAAAAACTAATATCGAACCCAAACCCGAAACCGAAACCAAAACCGAAGATGGTTATTGGAAGATCACTGGTAAAGATCGTGAAATCAAGACAAAAGGTACCAACATTGTTATAGGCATAAAAAAGACTCTTGTTTTCTATGGTAATCAACATGAAAAGACCAACTGGGTTATGCATGAGTATTATTCAAACTTTTCTGATAAGAAGGTATGTGTTGCTTTATTTTATTTTGAAAAGGCATGTGTTGTTTTATAA
Protein sequence

>MsG0880042867.01.T01

MPIGYRFRPTDQELVSHYLNHKLLGNDSIVNNIIPHVQLLNYAPWDLPALSKVKSDDKEWFFFTCLELIKFNKSKPRFNRKTNIEPKPETETKTEDGYWKITGKDREIKTKGTNIVIGIKKTLVFYGNQHEKTNWVMHEYYSNFSDKKVCVALFYFEKACVVL*