AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042916.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042916.01.T01 MTR_8g024770 92.026 464 27 1 1 464 1 454 0.0 833
MsG0880042916.01.T01 MTR_8g024790 81.619 457 69 8 13 464 16 462 0.0 737
MsG0880042916.01.T01 MTR_5g030430 51.980 202 88 4 270 464 474 673 3.81e-54 192
MsG0880042916.01.T01 MTR_5g030430 32.432 185 92 3 22 177 44 224 5.78e-27 114
MsG0880042916.01.T01 MTR_8g067280 47.668 193 93 3 271 456 444 635 4.87e-49 178
MsG0880042916.01.T01 MTR_8g067280 32.512 203 103 7 22 195 53 250 8.93e-25 108
MsG0880042916.01.T01 MTR_7g096350 27.542 472 240 12 22 436 49 475 1.37e-36 141
MsG0880042916.01.T01 MTR_5g030420 33.714 175 83 4 22 167 27 197 1.47e-27 110
MsG0880042916.01.T01 MTR_5g030420 33.714 175 83 4 22 167 27 197 2.06e-27 110
MsG0880042916.01.T01 MTR_8g027495 38.012 171 92 5 287 456 456 613 2.48e-24 106
MsG0880042916.01.T01 MTR_7g117670 35.465 172 95 3 287 456 400 557 3.65e-22 99.8
MsG0880042916.01.T01 MTR_3g104100 32.927 164 102 3 277 433 183 345 1.11e-17 85.1
MsG0880042916.01.T01 MTR_1g072320 31.429 210 116 6 253 445 431 629 2.10e-17 85.5
MsG0880042916.01.T01 MTR_2g081040 33.548 155 95 3 286 433 174 327 6.04e-16 79.7
MsG0880042916.01.T01 MTR_4g009110 25.989 177 120 3 275 448 164 332 7.39e-16 79.3
MsG0880042916.01.T01 MTR_4g009540 27.778 180 110 5 275 445 142 310 3.90e-15 76.6
MsG0880042916.01.T01 MTR_3g030700 35.795 176 98 5 266 433 173 341 5.91e-15 76.6
MsG0880042916.01.T01 MTR_0250s0040 29.730 148 80 4 260 402 69 197 7.64e-15 74.7
MsG0880042916.01.T01 MTR_4g097940 29.193 161 99 4 275 429 138 289 1.01e-14 75.5
MsG0880042916.01.T01 MTR_4g009540 29.268 164 96 5 275 429 142 294 1.18e-14 75.5
MsG0880042916.01.T01 MTR_7g083900 60.000 55 22 0 287 341 284 338 2.17e-13 72.4
MsG0880042916.01.T01 MTR_7g083900 60.000 55 22 0 287 341 284 338 2.21e-13 72.4
MsG0880042916.01.T01 MTR_3g498695 58.182 55 23 0 287 341 296 350 2.28e-13 72.4
MsG0880042916.01.T01 MTR_3g498695 58.182 55 23 0 287 341 296 350 2.29e-13 72.4
MsG0880042916.01.T01 MTR_5g014640 31.944 144 83 3 290 429 155 287 2.72e-13 71.2
MsG0880042916.01.T01 MTR_4g066460 30.263 152 72 5 256 402 139 261 1.66e-12 68.9
MsG0880042916.01.T01 MTR_4g067010 28.788 132 74 4 276 402 137 253 1.82e-12 68.6
MsG0880042916.01.T01 MTR_2g022280 27.381 168 105 5 288 442 1 164 2.12e-12 66.2
MsG0880042916.01.T01 MTR_6g047570 29.323 133 80 3 275 402 145 268 2.54e-12 68.2
MsG0880042916.01.T01 MTR_4g097950 34.815 135 78 5 274 401 54 185 3.23e-12 67.0
MsG0880042916.01.T01 MTR_4g092700 25.490 204 124 6 272 460 143 333 7.40e-12 67.0
MsG0880042916.01.T01 MTR_0246s0020 28.814 118 75 2 289 401 198 311 7.58e-12 67.0
MsG0880042916.01.T01 MTR_0246s0020 28.814 118 75 2 289 401 198 311 7.66e-12 67.0
MsG0880042916.01.T01 MTR_4g097920 29.167 168 98 7 268 431 136 286 1.02e-11 66.2
MsG0880042916.01.T01 MTR_2g010450 25.904 166 102 3 289 445 177 330 1.05e-11 66.6
MsG0880042916.01.T01 MTR_4g097920 29.167 168 98 7 268 431 121 271 1.06e-11 66.2
MsG0880042916.01.T01 MTR_8g098275 56.364 55 24 0 288 342 243 297 1.10e-11 67.0
MsG0880042916.01.T01 MTR_0011s0260 29.078 141 96 2 289 429 183 319 1.18e-11 66.6
MsG0880042916.01.T01 MTR_7g110810 31.667 120 71 2 236 345 150 268 1.19e-11 66.6
MsG0880042916.01.T01 MTR_2g084280 28.000 150 94 3 293 438 137 276 1.21e-11 65.9
MsG0880042916.01.T01 MTR_8g098275 56.364 55 24 0 288 342 307 361 1.21e-11 67.0
MsG0880042916.01.T01 MTR_8g098275 56.364 55 24 0 288 342 400 454 1.37e-11 67.0
MsG0880042916.01.T01 MTR_4g094762 30.968 155 93 6 290 434 293 443 1.75e-11 66.6
MsG0880042916.01.T01 MTR_0011s0210 27.660 141 98 2 289 429 183 319 2.00e-11 65.9
MsG0880042916.01.T01 MTR_2g104490 26.630 184 114 8 272 443 116 290 2.07e-11 65.1
MsG0880042916.01.T01 MTR_2g038040 50.000 62 24 1 290 344 53 114 2.45e-11 64.3
MsG0880042916.01.T01 MTR_2g104550 23.267 202 135 7 249 439 98 290 2.81e-11 65.1
MsG0880042916.01.T01 MTR_2g104490 26.667 180 111 8 272 439 116 286 3.44e-11 64.7
MsG0880042916.01.T01 MTR_1g112680 31.092 119 57 2 224 342 277 370 6.35e-11 64.7
MsG0880042916.01.T01 MTR_5g014600 35.366 82 50 1 269 347 126 207 8.02e-11 63.5
MsG0880042916.01.T01 MTR_4g057270 52.000 50 24 0 293 342 153 202 9.49e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042916.01.T01 AT4G00870 35.189 449 217 11 17 455 29 413 1.29e-68 225
MsG0880042916.01.T01 AT5G46830 32.277 505 253 15 22 464 33 510 1.07e-59 204
MsG0880042916.01.T01 AT1G32640 49.057 212 90 6 259 464 423 622 2.07e-52 187
MsG0880042916.01.T01 AT1G32640 30.526 190 95 3 22 178 67 252 1.69e-28 119
MsG0880042916.01.T01 AT4G17880 48.691 191 83 5 270 455 397 577 5.21e-50 179
MsG0880042916.01.T01 AT4G17880 29.167 192 96 3 23 178 63 250 1.66e-26 113
MsG0880042916.01.T01 AT5G46760 47.475 198 96 5 270 464 396 588 6.08e-49 177
MsG0880042916.01.T01 AT5G46760 32.065 184 89 4 22 173 51 230 1.69e-25 110
MsG0880042916.01.T01 AT2G46510 28.094 509 249 17 22 442 47 526 7.49e-43 159
MsG0880042916.01.T01 AT4G16430 26.068 468 262 13 3 437 25 441 3.55e-36 139
MsG0880042916.01.T01 AT1G01260 38.953 172 78 3 273 444 417 561 1.05e-26 113
MsG0880042916.01.T01 AT1G01260 38.953 172 78 3 273 444 417 561 1.05e-26 113
MsG0880042916.01.T01 AT1G01260 38.953 172 78 3 273 444 417 561 1.05e-26 113
MsG0880042916.01.T01 AT4G00480 21.212 495 279 16 28 436 26 495 1.81e-17 85.5
MsG0880042916.01.T01 AT4G00480 21.127 497 281 16 28 438 26 497 1.98e-17 85.1
MsG0880042916.01.T01 AT4G00480 21.127 497 281 16 28 438 26 497 2.67e-17 84.7
MsG0880042916.01.T01 AT4G37850 29.493 217 121 7 235 429 84 290 5.67e-16 79.3
MsG0880042916.01.T01 AT4G37850 29.493 217 121 7 235 429 84 290 5.67e-16 79.3
MsG0880042916.01.T01 AT3G26744 60.000 55 22 0 287 341 305 359 3.54e-14 75.1
MsG0880042916.01.T01 AT3G26744 60.000 55 22 0 287 341 305 359 3.56e-14 75.1
MsG0880042916.01.T01 AT3G26744 60.000 55 22 0 287 341 305 359 3.56e-14 75.1
MsG0880042916.01.T01 AT3G26744 60.000 55 22 0 287 341 305 359 3.56e-14 75.1
MsG0880042916.01.T01 AT1G12860 60.000 55 22 0 287 341 265 319 5.02e-14 74.3
MsG0880042916.01.T01 AT1G12860 60.000 55 22 0 287 341 265 319 6.21e-14 73.9
MsG0880042916.01.T01 AT1G63650 26.061 165 106 4 289 438 405 568 5.95e-13 71.2
MsG0880042916.01.T01 AT1G63650 26.061 165 106 4 289 438 405 568 5.95e-13 71.2
MsG0880042916.01.T01 AT1G63650 26.061 165 106 4 289 438 405 568 5.95e-13 71.2
MsG0880042916.01.T01 AT5G57150 28.977 176 114 5 267 437 38 207 1.10e-12 67.8
MsG0880042916.01.T01 AT5G57150 28.977 176 114 5 267 437 39 208 1.52e-12 67.4
MsG0880042916.01.T01 AT5G57150 28.977 176 114 5 267 437 39 208 1.59e-12 67.4
MsG0880042916.01.T01 AT5G57150 28.977 176 114 5 267 437 38 207 1.72e-12 67.8
MsG0880042916.01.T01 AT5G57150 31.288 163 107 4 290 447 56 218 2.66e-12 67.4
MsG0880042916.01.T01 AT4G29930 62.222 45 17 0 290 334 55 99 2.69e-12 67.0
MsG0880042916.01.T01 AT4G29930 62.222 45 17 0 290 334 55 99 2.76e-12 66.6
MsG0880042916.01.T01 AT4G29930 62.222 45 17 0 290 334 55 99 2.84e-12 66.6
MsG0880042916.01.T01 AT4G09820 50.909 55 27 0 288 342 362 416 4.11e-12 68.6
MsG0880042916.01.T01 AT4G29930 63.636 44 16 0 291 334 56 99 5.17e-12 65.1
MsG0880042916.01.T01 AT4G29930 62.222 45 17 0 290 334 55 99 5.23e-12 66.6
MsG0880042916.01.T01 AT4G29930 62.222 45 17 0 290 334 55 99 5.23e-12 66.6
MsG0880042916.01.T01 AT4G29930 62.222 45 17 0 290 334 55 99 5.59e-12 66.2
MsG0880042916.01.T01 AT2G16910 29.843 191 107 7 293 461 318 503 5.94e-12 68.2
MsG0880042916.01.T01 AT3G24140 24.537 216 138 5 269 460 175 389 2.12e-11 65.9
MsG0880042916.01.T01 AT3G24140 24.537 216 138 5 269 460 175 389 2.59e-11 65.9
MsG0880042916.01.T01 AT2G22750 36.090 133 76 4 276 401 137 267 4.02e-11 64.7
MsG0880042916.01.T01 AT2G22750 36.090 133 76 4 276 401 137 267 4.47e-11 64.7
MsG0880042916.01.T01 AT2G22750 36.090 133 76 4 276 401 133 263 4.47e-11 64.3
MsG0880042916.01.T01 AT5G41315 24.581 179 113 5 280 438 441 617 4.70e-11 65.5
MsG0880042916.01.T01 AT5G41315 24.581 179 113 5 280 438 438 614 4.81e-11 65.5
MsG0880042916.01.T01 AT5G41315 24.581 179 113 5 280 438 433 609 4.92e-11 65.5
MsG0880042916.01.T01 AT2G22750 36.090 133 76 4 276 401 109 239 4.98e-11 63.9
MsG0880042916.01.T01 AT2G22750 36.090 133 76 4 276 401 109 239 5.11e-11 63.9

Find 67 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTGAAGATTTAAAATT+AGG 0.097958 8:+15865521 MsG0880042916.01.T01:CDS
CTTGAAAGATTTGGAGTTTC+AGG 0.118528 8:+15865760 MsG0880042916.01.T01:CDS
CTTCTCATGGGTGGCTTCTT+TGG 0.173047 8:-15865171 None:intergenic
GAGATTGATGTGAAGATTAT+AGG 0.182361 8:+15865671 MsG0880042916.01.T01:CDS
AACGTAAACCTTTCTTATCT+TGG 0.217167 8:+15864664 MsG0880042916.01.T01:CDS
TCCAAACCCAATCCGAAAAT+TGG 0.228757 8:+15864604 MsG0880042916.01.T01:CDS
TGAGAATTGCAGACCTAATT+AGG 0.229660 8:-15865874 None:intergenic
TTGCTTTAGATTCTGTTCTT+TGG 0.229970 8:+15864850 MsG0880042916.01.T01:CDS
GTTTGAAGTTGTTGTTTCTT+TGG 0.252021 8:-15864709 None:intergenic
ATGACAATATACAACAAAAT+TGG 0.257338 8:+15864994 MsG0880042916.01.T01:CDS
TACTACAACTAGGTTTGTTT+TGG 0.270219 8:-15865631 None:intergenic
TCTTCATTTCTCATCTCATT+AGG 0.290165 8:-15865848 None:intergenic
ATCTTAAAGCATAGAATCTA+TGG 0.304209 8:-15865418 None:intergenic
ACGTAAACCTTTCTTATCTT+GGG 0.308662 8:+15864665 MsG0880042916.01.T01:CDS
AGATTGAAGATTTAAAATTA+GGG 0.310294 8:+15865522 MsG0880042916.01.T01:CDS
AACCATTATAACTTTATTAA+CGG 0.312837 8:-15865804 None:intergenic
AACCGTTAATAAAGTTATAA+TGG 0.312996 8:+15865802 MsG0880042916.01.T01:CDS
ATCTAAAGCAAAAGCTTTAC+CGG 0.323817 8:-15864838 None:intergenic
TTATCCATCTTTGAAACGTT+TGG 0.324231 8:-15865449 None:intergenic
AACTAACGGTGTAATCGAAA+TGG 0.327388 8:+15864965 MsG0880042916.01.T01:CDS
GCCAACATGGGTGTCGTCTC+TGG 0.337682 8:+15865140 MsG0880042916.01.T01:CDS
TTGATTCTGAGGAGGATGTT+TGG 0.339396 8:-15865046 None:intergenic
AATGAGTGTCTTGAAAGATT+TGG 0.347886 8:+15865751 MsG0880042916.01.T01:CDS
GGATGTTTGGAACATAGATT+TGG 0.360854 8:-15865033 None:intergenic
TCCATGCATGTGTGCTTCAT+TGG 0.364769 8:-15864916 None:intergenic
TGTTGAAGGGTTGGTGTTTG+TGG 0.365685 8:-15864564 None:intergenic
TGTTGGCAAAAGATGTGTTT+TGG 0.367022 8:-15865124 None:intergenic
AGGGTTGGTGTTTGTGGTGA+AGG 0.385693 8:-15864558 None:intergenic
TTTATCTCTCCTTTGTCTCT+CGG 0.386285 8:-15865390 None:intergenic
TCGATTACACCGTTAGTTGT+AGG 0.388592 8:-15864960 None:intergenic
ATGGGTGGCTTCTTTGGCGC+TGG 0.396457 8:-15865165 None:intergenic
GGTTCCAAACGTTTCAAAGA+TGG 0.424360 8:+15865445 MsG0880042916.01.T01:CDS
GGGTTGGTGTTTGTGGTGAA+GGG 0.433509 8:-15864557 None:intergenic
GACAGTAACACGTGTACAAA+CGG 0.437917 8:+15864741 MsG0880042916.01.T01:CDS
GAAATGAAGAGAGCCTAATT+AGG 0.443372 8:+15865861 MsG0880042916.01.T01:CDS
GAGATAATGAAATCTTTCAT+AGG 0.448427 8:-15864510 None:intergenic
ACATTTGTCAAGTGGGGTGG+TGG 0.451062 8:-15865090 None:intergenic
TTTAAAATTAGGGCAACAAA+AGG 0.456499 8:+15865532 MsG0880042916.01.T01:CDS
CCTTTCTTATCTTGGGGTGA+AGG 0.456583 8:+15864672 MsG0880042916.01.T01:CDS
AAAAGAGAACCGAAGAAAAG+AGG 0.478932 8:+15865320 MsG0880042916.01.T01:CDS
GTACAAACGGCGATGCTGAA+TGG 0.480446 8:+15864754 MsG0880042916.01.T01:CDS
CCTTCACCCCAAGATAAGAA+AGG 0.483126 8:-15864672 None:intergenic
ACTAACGGTGTAATCGAAAT+GGG 0.485666 8:+15864966 MsG0880042916.01.T01:CDS
TCGGCTTCCACATGGTTCAT+CGG 0.486588 8:-15865371 None:intergenic
TTTGGAACATAGATTTGGCT+TGG 0.488416 8:-15865028 None:intergenic
GGTGTTTGAGTTCGTGTCAA+CGG 0.501817 8:-15865350 None:intergenic
CGTAAACCTTTCTTATCTTG+GGG 0.502492 8:+15864666 MsG0880042916.01.T01:CDS
TAAATTTGAGTTTGATTCTG+AGG 0.509911 8:-15865057 None:intergenic
ATTCTATGCTTTAAGATCTG+TGG 0.527981 8:+15865424 MsG0880042916.01.T01:CDS
ACACTCATTAATCGTGCACT+AGG 0.531276 8:-15865737 None:intergenic
AATTGAAGAAGCATTACCTA+TGG 0.532558 8:-15864808 None:intergenic
TTCTTTGTTATCAGATGCAG+TGG 0.539939 8:+15865475 MsG0880042916.01.T01:CDS
TTTGTCTCTCGGCTTCCACA+TGG 0.548386 8:-15865379 None:intergenic
TCCAATGAAGCACACATGCA+TGG 0.551566 8:+15864915 MsG0880042916.01.T01:CDS
GCTTCTTCAATTTCATTACC+CGG 0.556623 8:+15864819 MsG0880042916.01.T01:CDS
ATGTGGAAGCCGAGAGACAA+AGG 0.579932 8:+15865381 MsG0880042916.01.T01:CDS
ATTTGAGTTTGATTCTGAGG+AGG 0.594452 8:-15865054 None:intergenic
ATTTGTATACCTACAACTAA+CGG 0.599891 8:+15864951 MsG0880042916.01.T01:CDS
ATAAGATTCTTACTACAACT+AGG 0.600771 8:-15865641 None:intergenic
TTTACATTTGTCAAGTGGGG+TGG 0.601476 8:-15865093 None:intergenic
GCCAGAGACGACACCCATGT+TGG 0.603838 8:-15865141 None:intergenic
GATTATAGGACATGATGCTA+TGG 0.615350 8:+15865685 MsG0880042916.01.T01:CDS
CACTCATTAATCGTGCACTA+GGG 0.626623 8:-15865736 None:intergenic
TAGATTTGGCTTGGTATACG+AGG 0.640872 8:-15865019 None:intergenic
TCTAAAGCAAAAGCTTTACC+GGG 0.640910 8:-15864837 None:intergenic
TGCAACGACAACTTCAATCG+TGG 0.678130 8:+15865604 MsG0880042916.01.T01:CDS
TCAAACACCGATGAACCATG+TGG 0.723026 8:+15865364 MsG0880042916.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACCATTATAACTTTATTAA+CGG - Chr8:15865807-15865826 None:intergenic 15.0%
!!! AAGATTGAAGATTTAAAATT+AGG + Chr8:15865521-15865540 MsG0880042916.01.T01:CDS 15.0%
!!! AGATTGAAGATTTAAAATTA+GGG + Chr8:15865522-15865541 MsG0880042916.01.T01:CDS 15.0%
!! AACCGTTAATAAAGTTATAA+TGG + Chr8:15865802-15865821 MsG0880042916.01.T01:CDS 20.0%
!! ATGACAATATACAACAAAAT+TGG + Chr8:15864994-15865013 MsG0880042916.01.T01:CDS 20.0%
! ATAAGATTCTTACTACAACT+AGG - Chr8:15865644-15865663 None:intergenic 25.0%
! ATCTTAAAGCATAGAATCTA+TGG - Chr8:15865421-15865440 None:intergenic 25.0%
! ATTTGTATACCTACAACTAA+CGG + Chr8:15864951-15864970 MsG0880042916.01.T01:CDS 25.0%
!! AATGTTTTACATTTGTCAAG+TGG - Chr8:15865101-15865120 None:intergenic 25.0%
!! ATGTTTTACATTTGTCAAGT+GGG - Chr8:15865100-15865119 None:intergenic 25.0%
!! TAAATTTGAGTTTGATTCTG+AGG - Chr8:15865060-15865079 None:intergenic 25.0%
!! TTTAAAATTAGGGCAACAAA+AGG + Chr8:15865532-15865551 MsG0880042916.01.T01:CDS 25.0%
!!! AAATTTGAAGCTTTTGTTGA+AGG - Chr8:15864581-15864600 None:intergenic 25.0%
!!! AATTTGAAGCTTTTGTTGAA+GGG - Chr8:15864580-15864599 None:intergenic 25.0%
!!! CAATTTTTTTTGCTTCTCAT+GGG - Chr8:15865186-15865205 None:intergenic 25.0%
AACGTAAACCTTTCTTATCT+TGG + Chr8:15864664-15864683 MsG0880042916.01.T01:CDS 30.0%
AATGAGTGTCTTGAAAGATT+TGG + Chr8:15865751-15865770 MsG0880042916.01.T01:CDS 30.0%
ACGTAAACCTTTCTTATCTT+GGG + Chr8:15864665-15864684 MsG0880042916.01.T01:CDS 30.0%
GAGATTGATGTGAAGATTAT+AGG + Chr8:15865671-15865690 MsG0880042916.01.T01:CDS 30.0%
TCTTCATTTCTCATCTCATT+AGG - Chr8:15865851-15865870 None:intergenic 30.0%
! AATGGCATAGATCCAATTTT+CGG - Chr8:15864619-15864638 None:intergenic 30.0%
! ATAGATCCAATTTTCGGATT+GGG - Chr8:15864613-15864632 None:intergenic 30.0%
! ATCTAAAGCAAAAGCTTTAC+CGG - Chr8:15864841-15864860 None:intergenic 30.0%
! ATGACTCGAAATTTTTCCAT+AGG + Chr8:15864792-15864811 MsG0880042916.01.T01:CDS 30.0%
! TGTTTTACATTTGTCAAGTG+GGG - Chr8:15865099-15865118 None:intergenic 30.0%
! TTGCTTTAGATTCTGTTCTT+TGG + Chr8:15864850-15864869 MsG0880042916.01.T01:CDS 30.0%
! TTTTCATGAGAAGATGAAGA+TGG - Chr8:15864537-15864556 None:intergenic 30.0%
!! AATTGAAGAAGCATTACCTA+TGG - Chr8:15864811-15864830 None:intergenic 30.0%
!! ATTCTATGCTTTAAGATCTG+TGG + Chr8:15865424-15865443 MsG0880042916.01.T01:CDS 30.0%
!! GTTTGAAGTTGTTGTTTCTT+TGG - Chr8:15864712-15864731 None:intergenic 30.0%
!! TACTACAACTAGGTTTGTTT+TGG - Chr8:15865634-15865653 None:intergenic 30.0%
!! TTATCCATCTTTGAAACGTT+TGG - Chr8:15865452-15865471 None:intergenic 30.0%
!!! GCAATTTTTTTTGCTTCTCA+TGG - Chr8:15865187-15865206 None:intergenic 30.0%
!!! GTTGTTTTTGTTGCTAATAG+TGG - Chr8:15865275-15865294 None:intergenic 30.0%
!!! TTTTGTTGTTTGCCACAAAA+TGG - Chr8:15864637-15864656 None:intergenic 30.0%
AAAAGAGAACCGAAGAAAAG+AGG + Chr8:15865320-15865339 MsG0880042916.01.T01:CDS 35.0%
AACTAACGGTGTAATCGAAA+TGG + Chr8:15864965-15864984 MsG0880042916.01.T01:CDS 35.0%
ACTAACGGTGTAATCGAAAT+GGG + Chr8:15864966-15864985 MsG0880042916.01.T01:CDS 35.0%
CGTAAACCTTTCTTATCTTG+GGG + Chr8:15864666-15864685 MsG0880042916.01.T01:CDS 35.0%
GAAATGAAGAGAGCCTAATT+AGG + Chr8:15865861-15865880 MsG0880042916.01.T01:CDS 35.0%
GATTATAGGACATGATGCTA+TGG + Chr8:15865685-15865704 MsG0880042916.01.T01:CDS 35.0%
GCTTCTTCAATTTCATTACC+CGG + Chr8:15864819-15864838 MsG0880042916.01.T01:CDS 35.0%
TGAGAATTGCAGACCTAATT+AGG - Chr8:15865877-15865896 None:intergenic 35.0%
TTTATCTCTCCTTTGTCTCT+CGG - Chr8:15865393-15865412 None:intergenic 35.0%
! AAACACATCTTTTGCCAACA+TGG + Chr8:15865127-15865146 MsG0880042916.01.T01:CDS 35.0%
! AACACATCTTTTGCCAACAT+GGG + Chr8:15865128-15865147 MsG0880042916.01.T01:CDS 35.0%
! ATTTGAGTTTGATTCTGAGG+AGG - Chr8:15865057-15865076 None:intergenic 35.0%
! CATAGATCCAATTTTCGGAT+TGG - Chr8:15864614-15864633 None:intergenic 35.0%
! CTTGAAAGATTTGGAGTTTC+AGG + Chr8:15865760-15865779 MsG0880042916.01.T01:CDS 35.0%
! GGATGTTTGGAACATAGATT+TGG - Chr8:15865036-15865055 None:intergenic 35.0%
! GGTTTTCTTCCTCTTTTCTT+CGG - Chr8:15865332-15865351 None:intergenic 35.0%
! TCTAAAGCAAAAGCTTTACC+GGG - Chr8:15864840-15864859 None:intergenic 35.0%
! TGTTGGCAAAAGATGTGTTT+TGG - Chr8:15865127-15865146 None:intergenic 35.0%
! TTCTTTGTTATCAGATGCAG+TGG + Chr8:15865475-15865494 MsG0880042916.01.T01:CDS 35.0%
! TTTGGAACATAGATTTGGCT+TGG - Chr8:15865031-15865050 None:intergenic 35.0%
!!! ATTGGATCTATGCCATTTTG+TGG + Chr8:15864622-15864641 MsG0880042916.01.T01:CDS 35.0%
!!! TTTTTTTTGCTTCTCATGGG+TGG - Chr8:15865183-15865202 None:intergenic 35.0%
ACACTCATTAATCGTGCACT+AGG - Chr8:15865740-15865759 None:intergenic 40.0%
CACTCATTAATCGTGCACTA+GGG - Chr8:15865739-15865758 None:intergenic 40.0%
GACAGTAACACGTGTACAAA+CGG + Chr8:15864741-15864760 MsG0880042916.01.T01:CDS 40.0%
GGTTCCAAACGTTTCAAAGA+TGG + Chr8:15865445-15865464 MsG0880042916.01.T01:CDS 40.0%
TCCAAACCCAATCCGAAAAT+TGG + Chr8:15864604-15864623 MsG0880042916.01.T01:CDS 40.0%
TCGATTACACCGTTAGTTGT+AGG - Chr8:15864963-15864982 None:intergenic 40.0%
TTTACATTTGTCAAGTGGGG+TGG - Chr8:15865096-15865115 None:intergenic 40.0%
! TGAAGCTTTTGTTGAAGGGT+TGG - Chr8:15864576-15864595 None:intergenic 40.0%
! TTGATTCTGAGGAGGATGTT+TGG - Chr8:15865049-15865068 None:intergenic 40.0%
!! TAGATTTGGCTTGGTATACG+AGG - Chr8:15865022-15865041 None:intergenic 40.0%
!! TCCAATTTTCGGATTGGGTT+TGG - Chr8:15864608-15864627 None:intergenic 40.0%
CCTTCACCCCAAGATAAGAA+AGG - Chr8:15864675-15864694 None:intergenic 45.0%
CCTTTCTTATCTTGGGGTGA+AGG + Chr8:15864672-15864691 MsG0880042916.01.T01:CDS 45.0%
TCAAACACCGATGAACCATG+TGG + Chr8:15865364-15865383 MsG0880042916.01.T01:CDS 45.0%
TCCAATGAAGCACACATGCA+TGG + Chr8:15864915-15864934 MsG0880042916.01.T01:CDS 45.0%
TCCATGCATGTGTGCTTCAT+TGG - Chr8:15864919-15864938 None:intergenic 45.0%
TGCAACGACAACTTCAATCG+TGG + Chr8:15865604-15865623 MsG0880042916.01.T01:CDS 45.0%
! GGTGTTTGAGTTCGTGTCAA+CGG - Chr8:15865353-15865372 None:intergenic 45.0%
! TGGGGTGAAGGCAATTTTCA+AGG + Chr8:15864684-15864703 MsG0880042916.01.T01:CDS 45.0%
!! TGTTGAAGGGTTGGTGTTTG+TGG - Chr8:15864567-15864586 None:intergenic 45.0%
ACATTTGTCAAGTGGGGTGG+TGG - Chr8:15865093-15865112 None:intergenic 50.0%
ATGTGGAAGCCGAGAGACAA+AGG + Chr8:15865381-15865400 MsG0880042916.01.T01:CDS 50.0%
CTTCTCATGGGTGGCTTCTT+TGG - Chr8:15865174-15865193 None:intergenic 50.0%
GTACAAACGGCGATGCTGAA+TGG + Chr8:15864754-15864773 MsG0880042916.01.T01:CDS 50.0%
TCGGCTTCCACATGGTTCAT+CGG - Chr8:15865374-15865393 None:intergenic 50.0%
TTTGTCTCTCGGCTTCCACA+TGG - Chr8:15865382-15865401 None:intergenic 50.0%
!! AGGGTTGGTGTTTGTGGTGA+AGG - Chr8:15864561-15864580 None:intergenic 50.0%
!! GGGTTGGTGTTTGTGGTGAA+GGG - Chr8:15864560-15864579 None:intergenic 50.0%
ATGGGTGGCTTCTTTGGCGC+TGG - Chr8:15865168-15865187 None:intergenic 60.0%
GCCAGAGACGACACCCATGT+TGG - Chr8:15865144-15865163 None:intergenic 60.0%
! GCCAACATGGGTGTCGTCTC+TGG + Chr8:15865140-15865159 MsG0880042916.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 15864513 15865907 15864513 ID=MsG0880042916.01;Name=MsG0880042916.01
Chr8 mRNA 15864513 15865907 15864513 ID=MsG0880042916.01.T01;Parent=MsG0880042916.01;Name=MsG0880042916.01.T01;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|464
Chr8 exon 15864513 15865907 15864513 ID=MsG0880042916.01.T01:exon:37033;Parent=MsG0880042916.01.T01
Chr8 CDS 15864513 15865907 15864513 ID=MsG0880042916.01.T01:cds;Parent=MsG0880042916.01.T01
Gene Sequence

>MsG0880042916.01.T01

ATGAAAGATTTCATTATCTCACCATCTTCATCTTCTCATGAAAACCCTTCACCACAAACACCAACCCTTCAACAAAAGCTTCAAATTTTAGTCCAAACCCAATCCGAAAATTGGATCTATGCCATTTTGTGGCAAACAACAAAAGATGAAAAACGTAAACCTTTCTTATCTTGGGGTGAAGGCAATTTTCAAGGAACCAAAGAAACAACAACTTCAAACAAACAAAACGACAGTAACACGTGTACAAACGGCGATGCTGAATGGTTCTACATGATGTCGATGACTCGAAATTTTTCCATAGGTAATGCTTCTTCAATTTCATTACCCGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTGAATAGTAAACATGAACTTCAAATTTATAACTGTGAGCGATCCAATGAAGCACACATGCATGGAATTGAAACACTGATTTGTATACCTACAACTAACGGTGTAATCGAAATGGGTTCTTATGACAATATACAACAAAATTGGAACCTCGTATACCAAGCCAAATCTATGTTCCAAACATCCTCCTCAGAATCAAACTCAAATTTAGATCTTAACTCCACCACCCCACTTGACAAATGTAAAACATTCATCCAAAACACATCTTTTGCCAACATGGGTGTCGTCTCTGGCGCCAGCGCCAAAGAAGCCACCCATGAGAAGCAAAAAAAATTGCAAGAAAAACATAAAAATGTTTCATCATGTTCTTTAGATTCTGAAGATTCTGATTCAGAATATTGTCCACTATTAGCAACAAAAACAACAACGACAAAGAACGATTCTTTTGAGAAAAGAGAACCGAAGAAAAGAGGAAGAAAACCGTTGACACGAACTCAAACACCGATGAACCATGTGGAAGCCGAGAGACAAAGGAGAGATAAACTAAACCATAGATTCTATGCTTTAAGATCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTACATCAATGAGTTAAAAGCAAAGATTGAAGATTTAAAATTAGGGCAACAAAAGGAATCGAAAAAGATGATGATGAAAACGATGAAAATTGTCGATAATAACAGTGCAACGACAACTTCAATCGTGGTAGACCAAAACAAACCTAGTTGTAGTAAGAATCTTATTGCTTTAGAGATTGATGTGAAGATTATAGGACATGATGCTATGGTGAGAGTTCAAAGTTTGAATGTTAATCACCCTAGTGCACGATTAATGAGTGTCTTGAAAGATTTGGAGTTTCAGGTACATCATGCTAGTATATCAACCGTTAATAAAGTTATAATGGTTCAAGATGTTATTGTTAAAATTCCTAATGAGATGAGAAATGAAGAGAGCCTAATTAGGTCTGCAATTCTCATGAAATTATGA
Protein sequence

>MsG0880042916.01.T01

MKDFIISPSSSSHENPSPQTPTLQQKLQILVQTQSENWIYAILWQTTKDEKRKPFLSWGEGNFQGTKETTTSNKQNDSNTCTNGDAEWFYMMSMTRNFSIGNASSISLPGKAFALDSVLWLNSKHELQIYNCERSNEAHMHGIETLICIPTTNGVIEMGSYDNIQQNWNLVYQAKSMFQTSSSESNSNLDLNSTTPLDKCKTFIQNTSFANMGVVSGASAKEATHEKQKKLQEKHKNVSSCSLDSEDSDSEYCPLLATKTTTTKNDSFEKREPKKRGRKPLTRTQTPMNHVEAERQRRDKLNHRFYALRSVVPNVSKMDKASLLSDAVDYINELKAKIEDLKLGQQKESKKMMMKTMKIVDNNSATTTSIVVDQNKPSCSKNLIALEIDVKIIGHDAMVRVQSLNVNHPSARLMSVLKDLEFQVHHASISTVNKVIMVQDVIVKIPNEMRNEESLIRSAILMKL*