AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043141.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043141.01.T01 MTR_8g030500 46.395 319 43 10 1 203 209 515 5.76e-57 199
MsG0880043141.01.T01 MTR_8g030500 76.429 140 12 1 221 339 648 787 6.02e-56 196
MsG0880043141.01.T01 MTR_0280s0040 45.522 134 57 2 222 341 659 790 3.37e-26 110
MsG0880043141.01.T01 MTR_2g089360 46.269 134 56 2 222 341 661 792 6.05e-25 107
MsG0880043141.01.T01 MTR_2g089440 37.162 148 76 3 201 334 414 558 3.56e-21 95.5
MsG0880043141.01.T01 MTR_2g089440 37.162 148 76 3 201 334 646 790 6.19e-21 95.1
MsG0880043141.01.T01 MTR_6g043510 38.843 121 62 2 222 330 656 776 5.07e-20 92.4
MsG0880043141.01.T01 MTR_6g043790 37.313 134 71 3 222 342 661 794 9.40e-20 91.7
MsG0880043141.01.T01 MTR_1g099400 39.062 128 65 2 222 336 689 816 1.10e-18 88.2
MsG0880043141.01.T01 MTR_2g067970 36.364 121 63 3 222 329 771 890 2.24e-17 84.3
MsG0880043141.01.T01 MTR_3g107070 36.434 129 71 1 222 339 639 767 4.06e-17 83.6
MsG0880043141.01.T01 MTR_5g013070 37.815 119 61 2 222 327 678 796 1.05e-16 82.4
MsG0880043141.01.T01 MTR_2g068650 41.322 121 57 5 222 329 621 740 2.31e-16 81.3
MsG0880043141.01.T01 MTR_2g067990 41.322 121 57 5 222 329 883 1002 3.28e-16 80.9
MsG0880043141.01.T01 MTR_2g073250 38.655 119 59 3 222 328 651 767 6.50e-16 79.7
MsG0880043141.01.T01 MTR_5g013130 36.975 119 62 2 222 327 675 793 8.06e-16 79.7
MsG0880043141.01.T01 MTR_4g114250 41.129 124 48 5 222 328 693 808 1.81e-15 78.6
MsG0880043141.01.T01 MTR_4g114270 42.609 115 57 3 222 327 691 805 2.15e-15 78.2
MsG0880043141.01.T01 MTR_2g067980 36.364 121 63 3 222 329 907 1026 2.25e-15 78.2
MsG0880043141.01.T01 MTR_2g080080 38.843 121 56 4 222 328 647 763 2.57e-15 77.8
MsG0880043141.01.T01 MTR_5g006160 36.975 119 54 3 221 325 657 768 3.04e-15 77.8
MsG0880043141.01.T01 MTR_8g011370 37.815 119 61 3 222 327 688 806 5.63e-15 77.0
MsG0880043141.01.T01 MTR_1g032930 35.156 128 64 2 222 330 664 791 1.34e-14 75.9
MsG0880043141.01.T01 MTR_2g080100 33.140 172 96 5 173 328 564 732 1.61e-14 75.5
MsG0880043141.01.T01 MTR_4g113710 30.387 181 96 5 180 330 221 401 4.63e-14 73.6
MsG0880043141.01.T01 MTR_2g103810 38.525 122 62 2 222 332 659 778 1.10e-13 73.2
MsG0880043141.01.T01 MTR_1g110260 33.099 142 83 4 222 351 401 542 1.37e-13 72.4
MsG0880043141.01.T01 MTR_5g026370 35.455 110 59 2 221 318 262 371 6.42e-13 70.1
MsG0880043141.01.T01 MTR_2g054870 32.609 138 74 2 212 330 266 403 1.32e-12 69.3
MsG0880043141.01.T01 MTR_8g011410 32.335 167 93 7 222 371 690 853 1.40e-12 69.7
MsG0880043141.01.T01 MTR_7g033135 33.858 127 74 4 221 337 480 606 3.81e-12 68.2
MsG0880043141.01.T01 MTR_6g088610 35.043 117 61 2 221 322 459 575 3.87e-12 68.2
MsG0880043141.01.T01 MTR_1g108910 37.097 124 66 5 222 342 209 323 5.27e-12 66.6
MsG0880043141.01.T01 MTR_1g012550 36.522 115 62 2 222 325 667 781 6.16e-12 67.4
MsG0880043141.01.T01 MTR_3g028630 30.286 175 78 8 173 327 233 383 6.39e-12 67.0
MsG0880043141.01.T01 MTR_2g036500 33.824 136 67 3 222 341 241 369 8.78e-12 66.6
MsG0880043141.01.T01 MTR_8g461260 34.821 112 62 2 221 321 212 323 1.29e-11 65.9
MsG0880043141.01.T01 MTR_8g011440 32.836 134 75 4 222 342 702 833 1.34e-11 66.6
MsG0880043141.01.T01 MTR_8g100155 29.070 172 94 5 173 332 210 365 1.36e-11 65.9
MsG0880043141.01.T01 MTR_1g028280 33.523 176 79 9 173 332 468 621 1.65e-11 66.2
MsG0880043141.01.T01 MTR_1g028280 33.523 176 79 9 173 332 507 660 1.70e-11 66.2
MsG0880043141.01.T01 MTR_3g087060 36.364 110 57 2 221 317 453 562 1.70e-11 65.9
MsG0880043141.01.T01 MTR_8g020920 29.518 166 87 6 173 325 218 366 1.85e-11 65.9
MsG0880043141.01.T01 MTR_3g087060 36.364 110 57 2 221 317 442 551 1.86e-11 65.9
MsG0880043141.01.T01 MTR_1g027440 35.398 113 62 4 222 329 447 553 1.89e-11 65.9
MsG0880043141.01.T01 MTR_5g083910 36.170 141 69 5 221 349 694 825 2.28e-11 65.9
MsG0880043141.01.T01 MTR_1g027840 30.058 173 85 8 173 329 162 314 2.65e-11 64.7
MsG0880043141.01.T01 MTR_8g101670 36.364 110 55 2 221 317 569 676 2.65e-11 65.5
MsG0880043141.01.T01 MTR_2g096950 34.545 110 60 2 221 318 250 359 2.73e-11 65.1
MsG0880043141.01.T01 MTR_5g083910 36.170 141 69 5 221 349 826 957 2.95e-11 65.5
MsG0880043141.01.T01 MTR_1g027730 30.636 173 84 8 173 329 162 314 3.24e-11 64.3
MsG0880043141.01.T01 MTR_7g113980 31.757 148 87 3 201 336 272 417 3.38e-11 64.7
MsG0880043141.01.T01 MTR_3g031610 27.879 165 83 4 173 316 641 790 3.55e-11 65.1
MsG0880043141.01.T01 MTR_1g027930 30.058 173 85 8 173 329 106 258 3.85e-11 63.9
MsG0880043141.01.T01 MTR_8g057660 38.462 104 57 2 221 317 212 315 4.55e-11 63.9
MsG0880043141.01.T01 MTR_8g087740 33.929 112 63 1 221 321 835 946 6.13e-11 64.7
MsG0880043141.01.T01 MTR_2g036490 36.752 117 63 2 222 327 300 416 6.70e-11 63.9
MsG0880043141.01.T01 MTR_4g114240 33.058 121 68 4 223 330 705 825 7.59e-11 64.3
MsG0880043141.01.T01 MTR_2g036460 38.462 117 61 2 222 327 310 426 8.90e-11 63.5
MsG0880043141.01.T01 MTR_4g114280 32.847 137 73 6 202 325 704 834 8.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043141.01.T01 AT2G19130 47.368 133 57 2 222 341 660 792 8.13e-27 112
MsG0880043141.01.T01 AT4G00340 53.731 134 43 2 221 335 646 779 1.86e-25 108
MsG0880043141.01.T01 AT4G00340 54.135 133 42 2 222 335 626 758 1.87e-25 108
MsG0880043141.01.T01 AT5G24080 42.520 127 61 2 222 336 697 823 4.80e-20 92.4
MsG0880043141.01.T01 AT5G24080 42.520 127 61 2 222 336 570 696 5.85e-20 92.0
MsG0880043141.01.T01 AT5G24080 42.520 127 61 2 222 336 570 696 5.85e-20 92.0
MsG0880043141.01.T01 AT1G34300 34.959 123 67 2 222 331 650 772 1.66e-17 84.7
MsG0880043141.01.T01 AT4G32300 36.923 130 70 2 222 339 659 788 2.41e-17 84.3
MsG0880043141.01.T01 AT1G61590 35.714 112 60 2 221 320 270 381 1.33e-13 72.0
MsG0880043141.01.T01 AT1G07570 31.646 158 80 5 173 318 96 237 2.52e-13 70.5
MsG0880043141.01.T01 AT1G21590 30.556 144 86 3 189 321 506 646 2.84e-13 71.6
MsG0880043141.01.T01 AT1G21590 30.556 144 86 3 189 321 546 686 2.94e-13 71.6
MsG0880043141.01.T01 AT1G70530 35.000 120 69 2 221 331 488 607 3.85e-13 71.2
MsG0880043141.01.T01 AT1G07570 31.646 158 80 5 173 318 212 353 6.16e-13 70.1
MsG0880043141.01.T01 AT1G07570 31.646 158 80 5 173 318 212 353 6.16e-13 70.1
MsG0880043141.01.T01 AT1G07570 31.646 158 80 5 173 318 212 353 6.16e-13 70.1
MsG0880043141.01.T01 AT1G07570 31.646 158 80 5 173 318 223 364 6.39e-13 70.1
MsG0880043141.01.T01 AT1G53420 38.596 114 57 3 221 321 790 903 8.53e-13 70.5
MsG0880043141.01.T01 AT2G28930 35.455 110 59 2 221 318 256 365 1.35e-12 68.9
MsG0880043141.01.T01 AT2G28930 35.455 110 59 2 221 318 245 354 1.48e-12 68.9
MsG0880043141.01.T01 AT2G28930 35.455 110 59 2 221 318 248 357 1.54e-12 68.9
MsG0880043141.01.T01 AT5G38250 28.182 220 129 6 140 331 379 597 2.05e-12 68.9
MsG0880043141.01.T01 AT5G35370 32.593 135 57 4 222 324 680 812 3.72e-12 68.2
MsG0880043141.01.T01 AT5G38240 37.500 128 61 5 221 331 429 554 6.18e-12 67.4
MsG0880043141.01.T01 AT5G38240 37.795 127 60 5 222 331 476 600 6.36e-12 67.4
MsG0880043141.01.T01 AT5G38240 37.795 127 60 5 222 331 494 618 6.82e-12 67.4
MsG0880043141.01.T01 AT5G38260 33.871 124 66 4 222 329 486 609 7.50e-12 67.4
MsG0880043141.01.T01 AT3G55450 34.188 117 65 2 221 325 238 354 1.16e-11 66.2
MsG0880043141.01.T01 AT3G55450 34.188 117 65 2 221 325 275 391 1.19e-11 66.2
MsG0880043141.01.T01 AT4G28670 31.092 119 70 3 221 328 500 617 1.83e-11 65.9
MsG0880043141.01.T01 AT1G66980 35.156 128 67 5 222 333 997 1124 2.13e-11 66.2
MsG0880043141.01.T01 AT1G66980 35.156 128 67 5 222 333 999 1126 2.13e-11 66.2
MsG0880043141.01.T01 AT2G39110 32.639 144 82 3 221 349 251 394 2.39e-11 65.1
MsG0880043141.01.T01 AT5G38280 36.508 126 63 4 221 330 496 620 2.64e-11 65.5
MsG0880043141.01.T01 AT2G39110 32.639 144 82 3 221 349 266 409 2.77e-11 65.1
MsG0880043141.01.T01 AT5G38280 36.508 126 63 4 221 330 496 620 2.77e-11 65.5
MsG0880043141.01.T01 AT1G29730 30.973 113 66 1 221 321 805 917 2.81e-11 65.9
MsG0880043141.01.T01 AT1G29730 30.973 113 66 1 221 321 837 949 2.88e-11 65.5
MsG0880043141.01.T01 AT1G52290 33.333 117 62 2 221 321 307 423 2.96e-11 65.1
MsG0880043141.01.T01 AT1G67000 32.143 140 71 5 222 337 722 861 3.32e-11 65.5
MsG0880043141.01.T01 AT1G56130 36.134 119 50 4 221 321 659 769 4.59e-11 65.1
MsG0880043141.01.T01 AT1G56130 36.134 119 50 4 221 321 710 820 4.77e-11 65.1
MsG0880043141.01.T01 AT2G39660 34.545 110 60 2 221 318 243 352 4.82e-11 64.3
MsG0880043141.01.T01 AT2G41890 50.000 56 28 0 272 327 688 743 6.57e-11 64.3
MsG0880043141.01.T01 AT1G56130 36.134 119 50 4 221 321 858 968 6.76e-11 64.3
MsG0880043141.01.T01 AT5G56790 35.455 110 60 2 221 319 555 664 7.54e-11 64.3
MsG0880043141.01.T01 AT5G20050 36.066 122 60 3 222 325 277 398 8.07e-11 63.5

Find 119 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGTTGTATGTTAGGTTTC+TGG 0.186427 8:+19634220 MsG0880043141.01.T01:CDS
TCAAAATCAAATCTATAAAT+AGG 0.261136 8:-19633642 None:intergenic
AAACTTGGGCATGGTGGGTT+TGG 0.261616 8:+19634479 MsG0880043141.01.T01:CDS
GGTAGCAGTTTGGTGCATTC+AGG 0.267805 8:+19635224 MsG0880043141.01.T01:CDS
TGGACGGTGGTGGATGGTTC+GGG 0.271960 8:+19633920 MsG0880043141.01.T01:CDS
GTAGCACCAGAGTGGATTTC+TGG 0.280074 8:+19634956 MsG0880043141.01.T01:CDS
AACTTGGGCATGGTGGGTTT+GGG 0.292203 8:+19634480 MsG0880043141.01.T01:CDS
TTAGACCGCCTACGATGTTT+AGG 0.296003 8:+19633724 MsG0880043141.01.T01:CDS
GGGATTATTCGGGTGGTGTT+TGG 0.306856 8:+19633942 MsG0880043141.01.T01:CDS
GGTGGTGGTGTGTGGTGGAA+TGG 0.307880 8:+19634194 MsG0880043141.01.T01:CDS
GTGGTGGTGTGTGGTGGAAT+GGG 0.327153 8:+19634195 MsG0880043141.01.T01:CDS
TATTCGCCAATGGCGTCGTT+TGG 0.330486 8:+19633672 MsG0880043141.01.T01:CDS
GTGGACGGTGGTGGATGGTT+CGG 0.332962 8:+19633919 MsG0880043141.01.T01:CDS
ATGGGAATGTGTTGTATGTT+AGG 0.357713 8:+19634213 MsG0880043141.01.T01:CDS
TGGATTCACCGAACGGGCTT+TGG 0.367088 8:+19633692 MsG0880043141.01.T01:CDS
GTGGTGTTTGGAGAGGGGAG+AGG 0.373796 8:+19633954 MsG0880043141.01.T01:CDS
CCCACCATGCCCAAGTTTCT+CGG 0.377013 8:-19634474 None:intergenic
AGGAAGCGATTGAAGGAGAA+TGG 0.385475 8:+19634369 MsG0880043141.01.T01:CDS
TAGACCGCCTACGATGTTTA+GGG 0.389290 8:+19633725 MsG0880043141.01.T01:CDS
GGACGGTGGTGGATGGTTCG+GGG 0.394496 8:+19633921 MsG0880043141.01.T01:CDS
GAGAATGGGTTGGAGGAAGA+TGG 0.395963 8:+19634384 MsG0880043141.01.T01:CDS
TGTTCGGTTAAGGGTGTTTG+TGG 0.398967 8:+19633834 MsG0880043141.01.T01:intron
AACTAAACTGTAGGCGTCGC+CGG 0.406126 8:+19635029 MsG0880043141.01.T01:CDS
ATTCGGGTGGTGTTTGGAGA+GGG 0.419752 8:+19633948 MsG0880043141.01.T01:CDS
CGGTGAAGCGTTGGAGAGGC+CGG 0.422674 8:+19634543 MsG0880043141.01.T01:CDS
AATGAGACCAACCATGAGTA+TGG 0.425800 8:+19635257 MsG0880043141.01.T01:CDS
TTCTTACAAGGAGCTTCAAT+TGG 0.425903 8:+19634437 MsG0880043141.01.T01:CDS
TTTGTGGCGGTGGACGGTGG+TGG 0.429812 8:+19633910 MsG0880043141.01.T01:CDS
AAGGTGGTGCCTCAACATTC+CGG 0.429878 8:-19635048 None:intergenic
TAATTGGTAGGGACTTCAGC+AGG 0.433291 8:+19634901 MsG0880043141.01.T01:intron
TGGCGGTGGACGGTGGTGGA+TGG 0.442201 8:+19633914 MsG0880043141.01.T01:CDS
GAGGGTTTGTGAGTGTGTTA+AGG 0.442774 8:+19633886 MsG0880043141.01.T01:CDS
GTCGTTTGGATTCACCGAAC+GGG 0.443304 8:+19633686 MsG0880043141.01.T01:CDS
AGTAGTTGCGGTGACTTTGA+TGG 0.447798 8:+19634335 MsG0880043141.01.T01:intron
AGAATGGGTTGGAGGAAGAT+GGG 0.450637 8:+19634385 MsG0880043141.01.T01:CDS
GACGGTGGTGGATGGTTCGG+GGG 0.456620 8:+19633922 MsG0880043141.01.T01:CDS
TGGTGTTTGGAGAGGGGAGA+GGG 0.456788 8:+19633955 MsG0880043141.01.T01:CDS
TGTTCCTGTGTTGAATTTGA+AGG 0.456950 8:+19634410 MsG0880043141.01.T01:CDS
TGGGAGGTTTGTGTTTGTGT+TGG 0.457858 8:+19633854 MsG0880043141.01.T01:CDS
GGCAACCATGAGAGGTACTT+TGG 0.459168 8:+19634929 MsG0880043141.01.T01:CDS
GTTCGGTTAAGGGTGTTTGT+GGG 0.459462 8:+19633835 MsG0880043141.01.T01:intron
ACCGTTCTCCAAAGCCCGTT+CGG 0.461321 8:-19633700 None:intergenic
GCCTAAGTTGCTACAAGCAT+TGG 0.464479 8:+19635326 MsG0880043141.01.T01:CDS
GGGTTTGGGACGGTGTTTCA+AGG 0.466505 8:+19634494 MsG0880043141.01.T01:CDS
AGTAATGCGGTTTCTACTGC+TGG 0.467694 8:+19635386 MsG0880043141.01.T01:CDS
GAAAATGTTAGAAGGGTTAG+TGG 0.468313 8:+19635284 MsG0880043141.01.T01:CDS
TGCGGTGACTTTGATGGTGT+TGG 0.468483 8:+19634341 MsG0880043141.01.T01:CDS
GGAAGCGATTGAAGGAGAAT+GGG 0.470531 8:+19634370 MsG0880043141.01.T01:CDS
ATGTTTAGGGTTGAGCCGTT+TGG 0.471797 8:+19633738 MsG0880043141.01.T01:CDS
GGGTTGCTCTGGTAGCAGTT+TGG 0.477023 8:+19635214 MsG0880043141.01.T01:CDS
ATGGTGGTGAAAATGTTAGA+AGG 0.477739 8:+19635276 MsG0880043141.01.T01:CDS
AAAGCTGATGTTTACAGCTA+TGG 0.482653 8:+19634995 MsG0880043141.01.T01:CDS
TTCGGGTGGTGTTTGGAGAG+GGG 0.485242 8:+19633949 MsG0880043141.01.T01:CDS
GGCGAAGAGGAAGCGATTGA+AGG 0.491160 8:+19634362 MsG0880043141.01.T01:CDS
GTTGAGGCACCACCTTCGTC+TGG 0.491248 8:+19635055 MsG0880043141.01.T01:CDS
TATTCGGGTGGTGTTTGGAG+AGG 0.493126 8:+19633947 MsG0880043141.01.T01:CDS
CCGAGAAACTTGGGCATGGT+GGG 0.495840 8:+19634474 MsG0880043141.01.T01:CDS
ATTGAAGGAGAATGGGTTGG+AGG 0.501457 8:+19634377 MsG0880043141.01.T01:CDS
GTTAGAAGGGTTAGTGGAGG+TGG 0.506090 8:+19635290 MsG0880043141.01.T01:CDS
TGTAGCAACTTAGGCGGCGG+TGG 0.510147 8:-19635318 None:intergenic
GGTTTGGGACGGTGTTTCAA+GGG 0.512268 8:+19634495 MsG0880043141.01.T01:CDS
ACTGCTTTGGAGAGTGGTGG+TGG 0.514185 8:+19634176 MsG0880043141.01.T01:CDS
CGGTTAAGGGTGTTTGTGGG+AGG 0.515419 8:+19633838 MsG0880043141.01.T01:intron
GGAGGCTAAGAGGGTTGCTC+TGG 0.516789 8:+19635203 MsG0880043141.01.T01:CDS
TGGGCATGGTGGGTTTGGGA+CGG 0.520926 8:+19634484 MsG0880043141.01.T01:CDS
GGTTACCGAGAGTCCTTTCG+TGG 0.521879 8:+19635347 MsG0880043141.01.T01:CDS
GCGATTGAAGGAGAATGGGT+TGG 0.525815 8:+19634374 MsG0880043141.01.T01:CDS
CGGTTGTTGCGGTGAAGCGT+TGG 0.530969 8:+19634534 MsG0880043141.01.T01:CDS
ACCGAACGGGCTTTGGAGAA+CGG 0.531612 8:+19633699 MsG0880043141.01.T01:CDS
TGAAGATGCTTATTCGCCAA+TGG 0.533055 8:+19633662 MsG0880043141.01.T01:CDS
GCTGTGGTTGATAAGAAGCT+TGG 0.541033 8:+19635162 MsG0880043141.01.T01:CDS
TTCACCACCATACTCATGGT+TGG 0.541170 8:-19635264 None:intergenic
TAGGGACTTCAGCAGGGTGT+TGG 0.541503 8:+19634908 MsG0880043141.01.T01:intron
TCCGAGAAACTTGGGCATGG+TGG 0.542614 8:+19634473 MsG0880043141.01.T01:CDS
CGTCGTTTGGATTCACCGAA+CGG 0.546227 8:+19633685 MsG0880043141.01.T01:CDS
GTGAATCCAAACGACGCCAT+TGG 0.546544 8:-19633678 None:intergenic
TAACATTGAGGAGGCTAAGA+GGG 0.549508 8:+19635194 MsG0880043141.01.T01:CDS
AGAGTCCTTTCGTGGTGTCA+AGG 0.554451 8:+19635355 MsG0880043141.01.T01:CDS
GGTGAAGCGTTGGAGAGGCC+GGG 0.555342 8:+19634544 MsG0880043141.01.T01:CDS
GCTTTGGAGAGTGGTGGTGG+TGG 0.556483 8:+19634179 MsG0880043141.01.T01:CDS
TTCATCTTTCTGCGACAACA+TGG 0.564637 8:+19635412 MsG0880043141.01.T01:CDS
TGGTGGTGAAAATGTTAGAA+GGG 0.567427 8:+19635277 MsG0880043141.01.T01:CDS
ATAACATTGAGGAGGCTAAG+AGG 0.572488 8:+19635193 MsG0880043141.01.T01:CDS
GGTTTGTGTTTGTGTTGGTG+AGG 0.575724 8:+19633859 MsG0880043141.01.T01:CDS
CATATCCAAAGTACCTCTCA+TGG 0.576218 8:-19634934 None:intergenic
GTTTGGGACGGTGTTTCAAG+GGG 0.577827 8:+19634496 MsG0880043141.01.T01:CDS
AGGGGAGTTGAGTGATTCAA+CGG 0.580336 8:+19634514 MsG0880043141.01.T01:CDS
TTGACTGCTTTGGAGAGTGG+TGG 0.582101 8:+19634173 MsG0880043141.01.T01:CDS
AATTTGACTGCTTTGGAGAG+TGG 0.583564 8:+19634170 MsG0880043141.01.T01:CDS
CGATGATAATGTGGCTGCTG+TGG 0.585759 8:+19635146 MsG0880043141.01.T01:CDS
TGACACCACGAAAGGACTCT+CGG 0.587178 8:-19635352 None:intergenic
GAGCTTCAATTGGCGACTCG+AGG 0.588994 8:+19634447 MsG0880043141.01.T01:CDS
GTTGCGGTGAAGCGTTGGAG+AGG 0.589491 8:+19634539 MsG0880043141.01.T01:CDS
TAGGCGTCGCCGGAATGTTG+AGG 0.599572 8:+19635039 MsG0880043141.01.T01:CDS
CAAGGTTGATTCAAGTAATG+CGG 0.601524 8:+19635373 MsG0880043141.01.T01:CDS
CTTTGATGGTGTTGGCGAAG+AGG 0.610418 8:+19634349 MsG0880043141.01.T01:CDS
AGGGTGTTGGCAACCATGAG+AGG 0.610423 8:+19634921 MsG0880043141.01.T01:CDS
GCTTGTAGCAACTTAGGCGG+CGG 0.612411 8:-19635321 None:intergenic
TTGGTGCATTCAGGATGATG+AGG 0.615296 8:+19635233 MsG0880043141.01.T01:CDS
GAGTGATTCAACGGTTGTTG+CGG 0.619871 8:+19634523 MsG0880043141.01.T01:CDS
TGGAAATGTATATAACATTG+AGG 0.621512 8:+19635182 MsG0880043141.01.T01:CDS
TGACATTAGAACTAAACTGT+AGG 0.623044 8:+19635020 MsG0880043141.01.T01:CDS
ATCAACCTTGACACCACGAA+AGG 0.628686 8:-19635360 None:intergenic
AATTGGTAGGGACTTCAGCA+GGG 0.632524 8:+19634902 MsG0880043141.01.T01:intron
TGTATGTTAGGTTTCTGGTG+AGG 0.633669 8:+19634225 MsG0880043141.01.T01:CDS
ACCAATGCTTGTAGCAACTT+AGG 0.640262 8:-19635327 None:intergenic
AACACCTTCAAATTCAACAC+AGG 0.648461 8:-19634414 None:intergenic
GAAGCGTTGGAGAGGCCGGG+AGG 0.648816 8:+19634547 MsG0880043141.01.T01:CDS
TCAACGCCAGAAATCCACTC+TGG 0.649234 8:-19634962 None:intergenic
AGATGATAACGATGATAATG+TGG 0.651510 8:+19635137 MsG0880043141.01.T01:intron
TTGGATATGTAGCACCAGAG+TGG 0.656769 8:+19634948 MsG0880043141.01.T01:CDS
AATGCTTGTAGCAACTTAGG+CGG 0.667969 8:-19635324 None:intergenic
AATGTTAGAAGGGTTAGTGG+AGG 0.669155 8:+19635287 MsG0880043141.01.T01:CDS
TTTCTATCACCAGACGAAGG+TGG 0.678679 8:-19635064 None:intergenic
GGCTCAACCCTAAACATCGT+AGG 0.681107 8:-19633732 None:intergenic
AAATGTATATAACATTGAGG+AGG 0.701749 8:+19635185 MsG0880043141.01.T01:CDS
CTCTTTCTATCACCAGACGA+AGG 0.725245 8:-19635067 None:intergenic
TCAACCCTAAACATCGTAGG+CGG 0.741214 8:-19633729 None:intergenic
GAGACCAACCATGAGTATGG+TGG 0.754536 8:+19635260 MsG0880043141.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATCAAATCTATAAAT+AGG - Chr8:19633645-19633664 None:intergenic 15.0%
! AAATGTATATAACATTGAGG+AGG + Chr8:19635185-19635204 MsG0880043141.01.T01:CDS 25.0%
! TGGAAATGTATATAACATTG+AGG + Chr8:19635182-19635201 MsG0880043141.01.T01:CDS 25.0%
!!! ATGTGTTTTGTTTTTGGTTT+TGG + Chr8:19634305-19634324 MsG0880043141.01.T01:intron 25.0%
!!! TATTGGATGTGTTTTGTTTT+TGG + Chr8:19634299-19634318 MsG0880043141.01.T01:intron 25.0%
!!! TTGTTTTTGGTTTTGGTTTT+GGG + Chr8:19634312-19634331 MsG0880043141.01.T01:intron 25.0%
!!! TTTGTTTTTGGTTTTGGTTT+TGG + Chr8:19634311-19634330 MsG0880043141.01.T01:intron 25.0%
ATTGGCAAAGTTAATTGGTA+GGG + Chr8:19634890-19634909 MsG0880043141.01.T01:intron 30.0%
GTTAATCTTGTGAGATTAAG+AGG + Chr8:19634622-19634641 MsG0880043141.01.T01:intron 30.0%
TGACATTAGAACTAAACTGT+AGG + Chr8:19635020-19635039 MsG0880043141.01.T01:CDS 30.0%
TTGAATTCTTGTGATTGTGT+TGG + Chr8:19634085-19634104 MsG0880043141.01.T01:intron 30.0%
! AGATGATAACGATGATAATG+TGG + Chr8:19635137-19635156 MsG0880043141.01.T01:intron 30.0%
! CAAACCTGAAAACATTCTTT+TGG + Chr8:19634831-19634850 MsG0880043141.01.T01:intron 30.0%
! CTATCCAAAAGAATGTTTTC+AGG - Chr8:19634838-19634857 None:intergenic 30.0%
! TTGAGAATGTGAGTAGTTTT+AGG + Chr8:19634029-19634048 MsG0880043141.01.T01:intron 30.0%
! TTTTCAGAATTTGACTGCTT+TGG + Chr8:19634163-19634182 MsG0880043141.01.T01:intron 30.0%
!! TGAGAATGTGAGTAGTTTTA+GGG + Chr8:19634030-19634049 MsG0880043141.01.T01:intron 30.0%
!! TGAGTTTTGATGAAAAGAGT+GGG + Chr8:19634110-19634129 MsG0880043141.01.T01:intron 30.0%
!! TGGGTTTTGTAGGATTTTTT+GGG + Chr8:19634129-19634148 MsG0880043141.01.T01:intron 30.0%
!! TTGAGTTTTGATGAAAAGAG+TGG + Chr8:19634109-19634128 MsG0880043141.01.T01:intron 30.0%
!! TTTGGATTGGCAAAGTTAAT+TGG + Chr8:19634885-19634904 MsG0880043141.01.T01:intron 30.0%
!!! TTTGAAGGTGTTTTCTTACA+AGG + Chr8:19634425-19634444 MsG0880043141.01.T01:CDS 30.0%
AAAGCTGATGTTTACAGCTA+TGG + Chr8:19634995-19635014 MsG0880043141.01.T01:CDS 35.0%
AACACCTTCAAATTCAACAC+AGG - Chr8:19634417-19634436 None:intergenic 35.0%
ATGGGAATGTGTTGTATGTT+AGG + Chr8:19634213-19634232 MsG0880043141.01.T01:CDS 35.0%
CAAAAACATATTCCACGAAC+CGG - Chr8:19633796-19633815 None:intergenic 35.0%
CAATCCAAAATCAGAAACCT+TGG - Chr8:19634874-19634893 None:intergenic 35.0%
GAAAATGTTAGAAGGGTTAG+TGG + Chr8:19635284-19635303 MsG0880043141.01.T01:CDS 35.0%
GATTGGCAAAGTTAATTGGT+AGG + Chr8:19634889-19634908 MsG0880043141.01.T01:intron 35.0%
TGTGTTGTATGTTAGGTTTC+TGG + Chr8:19634220-19634239 MsG0880043141.01.T01:CDS 35.0%
TGTTCCTGTGTTGAATTTGA+AGG + Chr8:19634410-19634429 MsG0880043141.01.T01:CDS 35.0%
TTCTTACAAGGAGCTTCAAT+TGG + Chr8:19634437-19634456 MsG0880043141.01.T01:CDS 35.0%
! ATGGTGGTGAAAATGTTAGA+AGG + Chr8:19635276-19635295 MsG0880043141.01.T01:CDS 35.0%
! CAAGGTTGATTCAAGTAATG+CGG + Chr8:19635373-19635392 MsG0880043141.01.T01:CDS 35.0%
! CAAGGTTTCTGATTTTGGAT+TGG + Chr8:19634872-19634891 MsG0880043141.01.T01:intron 35.0%
! GAGATTAAGAGGTTTTTGCT+CGG + Chr8:19634633-19634652 MsG0880043141.01.T01:intron 35.0%
! TGGTGGTGAAAATGTTAGAA+GGG + Chr8:19635277-19635296 MsG0880043141.01.T01:CDS 35.0%
!! ATGAAAAGAGTGGGTTTTGT+AGG + Chr8:19634119-19634138 MsG0880043141.01.T01:intron 35.0%
!! GTGGGTTTTGTAGGATTTTT+TGG + Chr8:19634128-19634147 MsG0880043141.01.T01:intron 35.0%
!!! GATTTTGGTGTTGTTAGGTT+TGG + Chr8:19634004-19634023 MsG0880043141.01.T01:CDS 35.0%
!!! GTAGTTTTAGGGCTAAATCT+AGG + Chr8:19634041-19634060 MsG0880043141.01.T01:intron 35.0%
!!! TTGAGGATTTTGGTGTTGTT+AGG + Chr8:19633999-19634018 MsG0880043141.01.T01:CDS 35.0%
AATGAGACCAACCATGAGTA+TGG + Chr8:19635257-19635276 MsG0880043141.01.T01:CDS 40.0%
AATGCTTGTAGCAACTTAGG+CGG - Chr8:19635327-19635346 None:intergenic 40.0%
ACCAATGCTTGTAGCAACTT+AGG - Chr8:19635330-19635349 None:intergenic 40.0%
AGAAAGAGTGATTGTGAGAC+AGG + Chr8:19635082-19635101 MsG0880043141.01.T01:intron 40.0%
ATAACATTGAGGAGGCTAAG+AGG + Chr8:19635193-19635212 MsG0880043141.01.T01:CDS 40.0%
GTTCCCAATTGTTGAAACCT+CGG - Chr8:19634593-19634612 None:intergenic 40.0%
GTTTATGAGTACATGCCGAA+TGG + Chr8:19634675-19634694 MsG0880043141.01.T01:intron 40.0%
TAACATTGAGGAGGCTAAGA+GGG + Chr8:19635194-19635213 MsG0880043141.01.T01:CDS 40.0%
TCCAAAATCAGAAACCTTGG+CGG - Chr8:19634871-19634890 None:intergenic 40.0%
TGAAGATGCTTATTCGCCAA+TGG + Chr8:19633662-19633681 MsG0880043141.01.T01:CDS 40.0%
TTCATCTTTCTGCGACAACA+TGG + Chr8:19635412-19635431 MsG0880043141.01.T01:CDS 40.0%
! AATGTTAGAAGGGTTAGTGG+AGG + Chr8:19635287-19635306 MsG0880043141.01.T01:CDS 40.0%
! AGGGTTTTTGATCATGGTGA+TGG + Chr8:19633974-19633993 MsG0880043141.01.T01:CDS 40.0%
! CATATCCAAAGTACCTCTCA+TGG - Chr8:19634937-19634956 None:intergenic 40.0%
! CATTTTCACCACCATACTCA+TGG - Chr8:19635271-19635290 None:intergenic 40.0%
! GTGAGTGTGTTAAGGTTTTG+TGG + Chr8:19633894-19633913 MsG0880043141.01.T01:CDS 40.0%
! TTAACCGAACAAATCGACTC+TGG - Chr8:19633825-19633844 None:intergenic 40.0%
!! AATTTGACTGCTTTGGAGAG+TGG + Chr8:19634170-19634189 MsG0880043141.01.T01:CDS 40.0%
!! AGAGTCGATTTGTTCGGTTA+AGG + Chr8:19633824-19633843 MsG0880043141.01.T01:intron 40.0%
!! AGTGTGTTAAGGTTTTGTGG+CGG + Chr8:19633897-19633916 MsG0880043141.01.T01:CDS 40.0%
!! CGTGGAATATGTTTTTGTCG+AGG + Chr8:19633799-19633818 MsG0880043141.01.T01:intron 40.0%
!! GAGTCGATTTGTTCGGTTAA+GGG + Chr8:19633825-19633844 MsG0880043141.01.T01:intron 40.0%
!! GGTTTGAGTGGTGTTGTTAT+TGG + Chr8:19634282-19634301 MsG0880043141.01.T01:intron 40.0%
!! TGTATGTTAGGTTTCTGGTG+AGG + Chr8:19634225-19634244 MsG0880043141.01.T01:CDS 40.0%
!! TTGTGTTGGTGAGGTTTTGA+GGG + Chr8:19633868-19633887 MsG0880043141.01.T01:CDS 40.0%
!! TTTGTGTTGGTGAGGTTTTG+AGG + Chr8:19633867-19633886 MsG0880043141.01.T01:CDS 40.0%
!!! GGTGATGGTTTTGAGGATTT+TGG + Chr8:19633989-19634008 MsG0880043141.01.T01:CDS 40.0%
!!! TGATCATGGTGATGGTTTTG+AGG + Chr8:19633982-19634001 MsG0880043141.01.T01:CDS 40.0%
!!! TTTGGTTTTGGGAGTAGTTG+CGG + Chr8:19634323-19634342 MsG0880043141.01.T01:intron 40.0%
AATTGGTAGGGACTTCAGCA+GGG + Chr8:19634902-19634921 MsG0880043141.01.T01:intron 45.0%
AGGAAGCGATTGAAGGAGAA+TGG + Chr8:19634369-19634388 MsG0880043141.01.T01:CDS 45.0%
AGGGGAGTTGAGTGATTCAA+CGG + Chr8:19634514-19634533 MsG0880043141.01.T01:CDS 45.0%
AGGTGGGGAGAAAGAGTTTA+GGG + Chr8:19634567-19634586 MsG0880043141.01.T01:intron 45.0%
AGTAATGCGGTTTCTACTGC+TGG + Chr8:19635386-19635405 MsG0880043141.01.T01:CDS 45.0%
AGTAGTTGCGGTGACTTTGA+TGG + Chr8:19634335-19634354 MsG0880043141.01.T01:intron 45.0%
ATAGTGATTTCACACCGCCA+AGG + Chr8:19634854-19634873 MsG0880043141.01.T01:intron 45.0%
ATCAACCTTGACACCACGAA+AGG - Chr8:19635363-19635382 None:intergenic 45.0%
CTAACATCCCAGCTCAAACA+AGG - Chr8:19634732-19634751 None:intergenic 45.0%
CTCTTTCTATCACCAGACGA+AGG - Chr8:19635070-19635089 None:intergenic 45.0%
CTTGTTTGAGCTGGGATGTT+AGG + Chr8:19634730-19634749 MsG0880043141.01.T01:intron 45.0%
CTTTCGCAGATAAGCGCTAA+GGG - Chr8:19634703-19634722 None:intergenic 45.0%
GAATCAGAGGTTGAAGGGTA+AGG + Chr8:19634261-19634280 MsG0880043141.01.T01:intron 45.0%
GAGGGTTTGTGAGTGTGTTA+AGG + Chr8:19633886-19633905 MsG0880043141.01.T01:CDS 45.0%
GAGTGATTCAACGGTTGTTG+CGG + Chr8:19634523-19634542 MsG0880043141.01.T01:CDS 45.0%
GCCTAAGTTGCTACAAGCAT+TGG + Chr8:19635326-19635345 MsG0880043141.01.T01:CDS 45.0%
GGAAGCGATTGAAGGAGAAT+GGG + Chr8:19634370-19634389 MsG0880043141.01.T01:CDS 45.0%
GGGAAGAATCAGAGGTTGAA+GGG + Chr8:19634256-19634275 MsG0880043141.01.T01:intron 45.0%
GTTGAAGGGTAAGGTTTGAG+TGG + Chr8:19634270-19634289 MsG0880043141.01.T01:intron 45.0%
TAATTGGTAGGGACTTCAGC+AGG + Chr8:19634901-19634920 MsG0880043141.01.T01:intron 45.0%
TACTGCCTCATCTGACCAAA+CGG - Chr8:19633756-19633775 None:intergenic 45.0%
TAGACCGCCTACGATGTTTA+GGG + Chr8:19633725-19633744 MsG0880043141.01.T01:CDS 45.0%
TCAACCCTAAACATCGTAGG+CGG - Chr8:19633732-19633751 None:intergenic 45.0%
TGGGAGGTTTGTGTTTGTGT+TGG + Chr8:19633854-19633873 MsG0880043141.01.T01:CDS 45.0%
TTAGACCGCCTACGATGTTT+AGG + Chr8:19633724-19633743 MsG0880043141.01.T01:CDS 45.0%
TTCACCACCATACTCATGGT+TGG - Chr8:19635267-19635286 None:intergenic 45.0%
TTGGATATGTAGCACCAGAG+TGG + Chr8:19634948-19634967 MsG0880043141.01.T01:CDS 45.0%
TTGGTGCATTCAGGATGATG+AGG + Chr8:19635233-19635252 MsG0880043141.01.T01:CDS 45.0%
TTTCTATCACCAGACGAAGG+TGG - Chr8:19635067-19635086 None:intergenic 45.0%
! ACCGCCAAGGTTTCTGATTT+TGG + Chr8:19634867-19634886 MsG0880043141.01.T01:intron 45.0%
! ATGTTTAGGGTTGAGCCGTT+TGG + Chr8:19633738-19633757 MsG0880043141.01.T01:CDS 45.0%
! CGAGGTTTTCCGAGAAACTT+GGG + Chr8:19634465-19634484 MsG0880043141.01.T01:CDS 45.0%
! GGTAGCATTGGAACTGCTAA+AGG + Chr8:19634757-19634776 MsG0880043141.01.T01:intron 45.0%
! GGTTTGTGTTTGTGTTGGTG+AGG + Chr8:19633859-19633878 MsG0880043141.01.T01:CDS 45.0%
! TCGAGGTTTTCCGAGAAACT+TGG + Chr8:19634464-19634483 MsG0880043141.01.T01:CDS 45.0%
! TTTTCCGAGAAACTTGGGCA+TGG + Chr8:19634470-19634489 MsG0880043141.01.T01:CDS 45.0%
!! AGAATGGGTTGGAGGAAGAT+GGG + Chr8:19634385-19634404 MsG0880043141.01.T01:CDS 45.0%
!! ATTGAAGGAGAATGGGTTGG+AGG + Chr8:19634377-19634396 MsG0880043141.01.T01:CDS 45.0%
!! GCTGTGGTTGATAAGAAGCT+TGG + Chr8:19635162-19635181 MsG0880043141.01.T01:CDS 45.0%
!! GTTCGGTTAAGGGTGTTTGT+GGG + Chr8:19633835-19633854 MsG0880043141.01.T01:intron 45.0%
!! TGTTCGGTTAAGGGTGTTTG+TGG + Chr8:19633834-19633853 MsG0880043141.01.T01:intron 45.0%
AAGGTGGTGCCTCAACATTC+CGG - Chr8:19635051-19635070 None:intergenic 50.0%
ACAGGTGGTTCTTTCCTCCA+TGG + Chr8:19635107-19635126 MsG0880043141.01.T01:intron 50.0%
AGCGCTTATCTGCGAAAGGA+GGG + Chr8:19634705-19634724 MsG0880043141.01.T01:intron 50.0%
AGGGCCGAGGTTTCAACAAT+TGG + Chr8:19634586-19634605 MsG0880043141.01.T01:intron 50.0%
ATGTTAGGCTCGGGTAGCAT+TGG + Chr8:19634745-19634764 MsG0880043141.01.T01:intron 50.0%
ATTCGGGTGGTGTTTGGAGA+GGG + Chr8:19633948-19633967 MsG0880043141.01.T01:CDS 50.0%
ATTGTGAGACAGGAGACAGG+TGG + Chr8:19635092-19635111 MsG0880043141.01.T01:intron 50.0%
CAACCTCTGATTCTTCCCCT+CGG - Chr8:19634254-19634273 None:intergenic 50.0%
CAGGTGGTTCTTTCCTCCAT+GGG + Chr8:19635108-19635127 MsG0880043141.01.T01:intron 50.0%
CCTTAGCGCTTATCTGCGAA+AGG + Chr8:19634701-19634720 MsG0880043141.01.T01:intron 50.0%
CCTTTCGCAGATAAGCGCTA+AGG - Chr8:19634704-19634723 None:intergenic 50.0%
CGTCGTTTGGATTCACCGAA+CGG + Chr8:19633685-19633704 MsG0880043141.01.T01:CDS 50.0%
GAGACCAACCATGAGTATGG+TGG + Chr8:19635260-19635279 MsG0880043141.01.T01:CDS 50.0%
GAGGTGGGGAGAAAGAGTTT+AGG + Chr8:19634566-19634585 MsG0880043141.01.T01:intron 50.0%
GCGATTGAAGGAGAATGGGT+TGG + Chr8:19634374-19634393 MsG0880043141.01.T01:CDS 50.0%
GGCTCAACCCTAAACATCGT+AGG - Chr8:19633735-19633754 None:intergenic 50.0%
GGGATTATTCGGGTGGTGTT+TGG + Chr8:19633942-19633961 MsG0880043141.01.T01:CDS 50.0%
GGGCCGAGGTTTCAACAATT+GGG + Chr8:19634587-19634606 MsG0880043141.01.T01:intron 50.0%
GGGGAAGAATCAGAGGTTGA+AGG + Chr8:19634255-19634274 MsG0880043141.01.T01:intron 50.0%
GTCAGATGAGGCAGTATACG+TGG + Chr8:19633760-19633779 MsG0880043141.01.T01:intron 50.0%
GTCGTTTGGATTCACCGAAC+GGG + Chr8:19633686-19633705 MsG0880043141.01.T01:CDS 50.0%
GTGAATCCAAACGACGCCAT+TGG - Chr8:19633681-19633700 None:intergenic 50.0%
GTGATTGTGAGACAGGAGAC+AGG + Chr8:19635089-19635108 MsG0880043141.01.T01:intron 50.0%
GTTATCATCTGTGCTGCCCA+TGG - Chr8:19635127-19635146 None:intergenic 50.0%
TAGCGCTTATCTGCGAAAGG+AGG + Chr8:19634704-19634723 MsG0880043141.01.T01:intron 50.0%
TATCCGAGGGGAAGAATCAG+AGG + Chr8:19634248-19634267 MsG0880043141.01.T01:intron 50.0%
TATTCGCCAATGGCGTCGTT+TGG + Chr8:19633672-19633691 MsG0880043141.01.T01:CDS 50.0%
TATTCGGGTGGTGTTTGGAG+AGG + Chr8:19633947-19633966 MsG0880043141.01.T01:CDS 50.0%
TCAACGCCAGAAATCCACTC+TGG - Chr8:19634965-19634984 None:intergenic 50.0%
TCTAGGAGTTTGTGTGAGCG+TGG + Chr8:19634058-19634077 MsG0880043141.01.T01:intron 50.0%
TGACACCACGAAAGGACTCT+CGG - Chr8:19635355-19635374 None:intergenic 50.0%
TTGAGCCGTTTGGTCAGATG+AGG + Chr8:19633748-19633767 MsG0880043141.01.T01:intron 50.0%
TTGAGCTGGGATGTTAGGCT+CGG + Chr8:19634735-19634754 MsG0880043141.01.T01:intron 50.0%
! AACTAAACTGTAGGCGTCGC+CGG + Chr8:19635029-19635048 MsG0880043141.01.T01:CDS 50.0%
! AGAGTCCTTTCGTGGTGTCA+AGG + Chr8:19635355-19635374 MsG0880043141.01.T01:CDS 50.0%
! CGATGATAATGTGGCTGCTG+TGG + Chr8:19635146-19635165 MsG0880043141.01.T01:CDS 50.0%
! GATGGTTCGGGGGATTATTC+GGG + Chr8:19633932-19633951 MsG0880043141.01.T01:CDS 50.0%
! GGATGGTTCGGGGGATTATT+CGG + Chr8:19633931-19633950 MsG0880043141.01.T01:CDS 50.0%
! GGGGAGAGGGTTTTTGATCA+TGG + Chr8:19633968-19633987 MsG0880043141.01.T01:CDS 50.0%
! GGTTTGGGACGGTGTTTCAA+GGG + Chr8:19634495-19634514 MsG0880043141.01.T01:CDS 50.0%
! GTAGCACCAGAGTGGATTTC+TGG + Chr8:19634956-19634975 MsG0880043141.01.T01:CDS 50.0%
! GTTAGAAGGGTTAGTGGAGG+TGG + Chr8:19635290-19635309 MsG0880043141.01.T01:CDS 50.0%
! GTTTGGGACGGTGTTTCAAG+GGG + Chr8:19634496-19634515 MsG0880043141.01.T01:CDS 50.0%
! TTTCTGGTGAGGTATCCGAG+GGG + Chr8:19634236-19634255 MsG0880043141.01.T01:intron 50.0%
!! AAACTTGGGCATGGTGGGTT+TGG + Chr8:19634479-19634498 MsG0880043141.01.T01:CDS 50.0%
!! AACTTGGGCATGGTGGGTTT+GGG + Chr8:19634480-19634499 MsG0880043141.01.T01:CDS 50.0%
!! CGGAGAATGCACATCGACTT+TGG + Chr8:19634653-19634672 MsG0880043141.01.T01:intron 50.0%
!! CTTTGATGGTGTTGGCGAAG+AGG + Chr8:19634349-19634368 MsG0880043141.01.T01:CDS 50.0%
!! GAGAATGGGTTGGAGGAAGA+TGG + Chr8:19634384-19634403 MsG0880043141.01.T01:CDS 50.0%
!! GAGGCCAGAGTCGATTTGTT+CGG + Chr8:19633818-19633837 MsG0880043141.01.T01:intron 50.0%
!! GGCAACCATGAGAGGTACTT+TGG + Chr8:19634929-19634948 MsG0880043141.01.T01:CDS 50.0%
!! GGTAGCAGTTTGGTGCATTC+AGG + Chr8:19635224-19635243 MsG0880043141.01.T01:CDS 50.0%
!! GTGTTAAGGTTTTGTGGCGG+TGG + Chr8:19633900-19633919 MsG0880043141.01.T01:CDS 50.0%
!! GTTTCTGGTGAGGTATCCGA+GGG + Chr8:19634235-19634254 MsG0880043141.01.T01:intron 50.0%
!! TAAGCGCTAAGGGCACCATT+CGG - Chr8:19634693-19634712 None:intergenic 50.0%
!! TAAGGTTTTGTGGCGGTGGA+CGG + Chr8:19633904-19633923 MsG0880043141.01.T01:CDS 50.0%
!! TGCGGTGACTTTGATGGTGT+TGG + Chr8:19634341-19634360 MsG0880043141.01.T01:CDS 50.0%
!! TTGACTGCTTTGGAGAGTGG+TGG + Chr8:19634173-19634192 MsG0880043141.01.T01:CDS 50.0%
AACTCTTTCTCCCCACCTCC+CGG - Chr8:19634565-19634584 None:intergenic 55.0%
ACCGTTCTCCAAAGCCCGTT+CGG - Chr8:19633703-19633722 None:intergenic 55.0%
ATCATCTGTGCTGCCCATGG+AGG - Chr8:19635124-19635143 None:intergenic 55.0%
CCCACCATGCCCAAGTTTCT+CGG - Chr8:19634477-19634496 None:intergenic 55.0%
CCGAGAAACTTGGGCATGGT+GGG + Chr8:19634474-19634493 MsG0880043141.01.T01:CDS 55.0%
GAGCTTCAATTGGCGACTCG+AGG + Chr8:19634447-19634466 MsG0880043141.01.T01:CDS 55.0%
GCAGTATACGTGGTCGAGTC+AGG + Chr8:19633770-19633789 MsG0880043141.01.T01:intron 55.0%
GCGCTTATCTGCGAAAGGAG+GGG + Chr8:19634706-19634725 MsG0880043141.01.T01:intron 55.0%
GCTTGTAGCAACTTAGGCGG+CGG - Chr8:19635324-19635343 None:intergenic 55.0%
GGCGAAGAGGAAGCGATTGA+AGG + Chr8:19634362-19634381 MsG0880043141.01.T01:CDS 55.0%
GGGTTGCTCTGGTAGCAGTT+TGG + Chr8:19635214-19635233 MsG0880043141.01.T01:CDS 55.0%
GGTTACCGAGAGTCCTTTCG+TGG + Chr8:19635347-19635366 MsG0880043141.01.T01:CDS 55.0%
TAGGGACTTCAGCAGGGTGT+TGG + Chr8:19634908-19634927 MsG0880043141.01.T01:intron 55.0%
TATACGTGGTCGAGTCAGGC+CGG + Chr8:19633774-19633793 MsG0880043141.01.T01:intron 55.0%
TCCGAGAAACTTGGGCATGG+TGG + Chr8:19634473-19634492 MsG0880043141.01.T01:CDS 55.0%
TGAGCTGGGATGTTAGGCTC+GGG + Chr8:19634736-19634755 MsG0880043141.01.T01:intron 55.0%
TGGTGTTTGGAGAGGGGAGA+GGG + Chr8:19633955-19633974 MsG0880043141.01.T01:CDS 55.0%
TTCGGGTGGTGTTTGGAGAG+GGG + Chr8:19633949-19633968 MsG0880043141.01.T01:CDS 55.0%
! GGAGAAAGAGTTTAGGGCCG+AGG + Chr8:19634573-19634592 MsG0880043141.01.T01:intron 55.0%
! GGGTTTGGGACGGTGTTTCA+AGG + Chr8:19634494-19634513 MsG0880043141.01.T01:CDS 55.0%
! GTGGTGGTGTGTGGTGGAAT+GGG + Chr8:19634195-19634214 MsG0880043141.01.T01:CDS 55.0%
! TGGATTCACCGAACGGGCTT+TGG + Chr8:19633692-19633711 MsG0880043141.01.T01:CDS 55.0%
!! ACCGAACGGGCTTTGGAGAA+CGG + Chr8:19633699-19633718 MsG0880043141.01.T01:CDS 55.0%
!! ACTGCTTTGGAGAGTGGTGG+TGG + Chr8:19634176-19634195 MsG0880043141.01.T01:CDS 55.0%
!! AGGGTGTTGGCAACCATGAG+AGG + Chr8:19634921-19634940 MsG0880043141.01.T01:CDS 55.0%
!! CGGTTAAGGGTGTTTGTGGG+AGG + Chr8:19633838-19633857 MsG0880043141.01.T01:intron 55.0%
!! GGTTTCTGGTGAGGTATCCG+AGG + Chr8:19634234-19634253 MsG0880043141.01.T01:intron 55.0%
CGGTTGTTGCGGTGAAGCGT+TGG + Chr8:19634534-19634553 MsG0880043141.01.T01:CDS 60.0%
GGAGGCTAAGAGGGTTGCTC+TGG + Chr8:19635203-19635222 MsG0880043141.01.T01:CDS 60.0%
GGTTCGGGGGATTATTCGGG+TGG + Chr8:19633935-19633954 MsG0880043141.01.T01:CDS 60.0%
GTGGTGTTTGGAGAGGGGAG+AGG + Chr8:19633954-19633973 MsG0880043141.01.T01:CDS 60.0%
TGTAGCAACTTAGGCGGCGG+TGG - Chr8:19635321-19635340 None:intergenic 60.0%
! GGTGGTGGTGTGTGGTGGAA+TGG + Chr8:19634194-19634213 MsG0880043141.01.T01:CDS 60.0%
! GTTGAGGCACCACCTTCGTC+TGG + Chr8:19635055-19635074 MsG0880043141.01.T01:CDS 60.0%
! TAGGCGTCGCCGGAATGTTG+AGG + Chr8:19635039-19635058 MsG0880043141.01.T01:CDS 60.0%
!! AGAGTGGTGGTGGTGGTGTG+TGG + Chr8:19634186-19634205 MsG0880043141.01.T01:CDS 60.0%
!! AGGAGGGGCCTTGTTTGAGC+TGG + Chr8:19634721-19634740 MsG0880043141.01.T01:intron 60.0%
!! GCTTTGGAGAGTGGTGGTGG+TGG + Chr8:19634179-19634198 MsG0880043141.01.T01:CDS 60.0%
!! GGAGGGGCCTTGTTTGAGCT+GGG + Chr8:19634722-19634741 MsG0880043141.01.T01:intron 60.0%
!! GTGGACGGTGGTGGATGGTT+CGG + Chr8:19633919-19633938 MsG0880043141.01.T01:CDS 60.0%
!! GTTGCGGTGAAGCGTTGGAG+AGG + Chr8:19634539-19634558 MsG0880043141.01.T01:CDS 60.0%
!! TGGACGGTGGTGGATGGTTC+GGG + Chr8:19633920-19633939 MsG0880043141.01.T01:CDS 60.0%
!! TGGGCATGGTGGGTTTGGGA+CGG + Chr8:19634484-19634503 MsG0880043141.01.T01:CDS 60.0%
TTTGTGGCGGTGGACGGTGG+TGG + Chr8:19633910-19633929 MsG0880043141.01.T01:CDS 65.0%
!! CGGTGAAGCGTTGGAGAGGC+CGG + Chr8:19634543-19634562 MsG0880043141.01.T01:CDS 65.0%
!! GACGGTGGTGGATGGTTCGG+GGG + Chr8:19633922-19633941 MsG0880043141.01.T01:CDS 65.0%
!! GGACGGTGGTGGATGGTTCG+GGG + Chr8:19633921-19633940 MsG0880043141.01.T01:CDS 65.0%
!! GGTGAAGCGTTGGAGAGGCC+GGG + Chr8:19634544-19634563 MsG0880043141.01.T01:CDS 65.0%
!! GGTTTTGTGGCGGTGGACGG+TGG + Chr8:19633907-19633926 MsG0880043141.01.T01:CDS 65.0%
!! GTGGTGGTGGTGGTGTGTGG+TGG + Chr8:19634189-19634208 MsG0880043141.01.T01:CDS 65.0%
CGTTGGAGAGGCCGGGAGGT+GGG + Chr8:19634551-19634570 MsG0880043141.01.T01:intron 70.0%
GTTGGAGAGGCCGGGAGGTG+GGG + Chr8:19634552-19634571 MsG0880043141.01.T01:intron 70.0%
!! GAAGCGTTGGAGAGGCCGGG+AGG + Chr8:19634547-19634566 MsG0880043141.01.T01:CDS 70.0%
!! GGTCGAGTCAGGCCGGTTCG+TGG + Chr8:19633781-19633800 MsG0880043141.01.T01:intron 70.0%
!! TGGCGGTGGACGGTGGTGGA+TGG + Chr8:19633914-19633933 MsG0880043141.01.T01:CDS 70.0%
GCGTTGGAGAGGCCGGGAGG+TGG + Chr8:19634550-19634569 MsG0880043141.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 19633633 19635467 19633633 ID=MsG0880043141.01;Name=MsG0880043141.01
Chr8 mRNA 19633633 19635467 19633633 ID=MsG0880043141.01.T01;Parent=MsG0880043141.01;Name=MsG0880043141.01.T01;_AED=0.43;_eAED=0.46;_QI=0|0|0|1|1|0.83|6|0|372
Chr8 exon 19633633 19633759 19633633 ID=MsG0880043141.01.T01:exon:5147;Parent=MsG0880043141.01.T01
Chr8 exon 19633846 19634036 19633846 ID=MsG0880043141.01.T01:exon:5148;Parent=MsG0880043141.01.T01
Chr8 exon 19634170 19634246 19634170 ID=MsG0880043141.01.T01:exon:5149;Parent=MsG0880043141.01.T01
Chr8 exon 19634340 19634568 19634340 ID=MsG0880043141.01.T01:exon:5150;Parent=MsG0880043141.01.T01
Chr8 exon 19634911 19635076 19634911 ID=MsG0880043141.01.T01:exon:5151;Parent=MsG0880043141.01.T01
Chr8 exon 19635139 19635467 19635139 ID=MsG0880043141.01.T01:exon:5152;Parent=MsG0880043141.01.T01
Chr8 CDS 19633633 19633759 19633633 ID=MsG0880043141.01.T01:cds;Parent=MsG0880043141.01.T01
Chr8 CDS 19633846 19634036 19633846 ID=MsG0880043141.01.T01:cds;Parent=MsG0880043141.01.T01
Chr8 CDS 19634170 19634246 19634170 ID=MsG0880043141.01.T01:cds;Parent=MsG0880043141.01.T01
Chr8 CDS 19634340 19634568 19634340 ID=MsG0880043141.01.T01:cds;Parent=MsG0880043141.01.T01
Chr8 CDS 19634911 19635076 19634911 ID=MsG0880043141.01.T01:cds;Parent=MsG0880043141.01.T01
Chr8 CDS 19635139 19635467 19635139 ID=MsG0880043141.01.T01:cds;Parent=MsG0880043141.01.T01
Gene Sequence

>MsG0880043141.01.T01

ATGACGGTGCCTATTTATAGATTTGATTTTGAAGATGCTTATTCGCCAATGGCGTCGTTTGGATTCACCGAACGGGCTTTGGAGAACGGTGTTAGACCGCCTACGATGTTTAGGGTTGAGCCGTTTGGGTGTTTGTGGGAGGTTTGTGTTTGTGTTGGTGAGGTTTTGAGGGTTTGTGAGTGTGTTAAGGTTTTGTGGCGGTGGACGGTGGTGGATGGTTCGGGGGATTATTCGGGTGGTGTTTGGAGAGGGGAGAGGGTTTTTGATCATGGTGATGGTTTTGAGGATTTTGGTGTTGTTAGGTTTGGTTTTGAGAATAATTTGACTGCTTTGGAGAGTGGTGGTGGTGGTGTGTGGTGGAATGGGAATGTGTTGTATGTTAGGTTTCTGGTGAGTTGCGGTGACTTTGATGGTGTTGGCGAAGAGGAAGCGATTGAAGGAGAATGGGTTGGAGGAAGATGGGTTTGTTCCTGTGTTGAATTTGAAGGTGTTTTCTTACAAGGAGCTTCAATTGGCGACTCGAGGTTTTCCGAGAAACTTGGGCATGGTGGGTTTGGGACGGTGTTTCAAGGGGAGTTGAGTGATTCAACGGTTGTTGCGGTGAAGCGTTGGAGAGGCCGGGAGGGACTTCAGCAGGGTGTTGGCAACCATGAGAGGTACTTTGGATATGTAGCACCAGAGTGGATTTCTGGCGTTGAAATTACTACTAAAGCTGATGTTTACAGCTATGGAATGACATTAGAACTAAACTGTAGGCGTCGCCGGAATGTTGAGGCACCACCTTCGTCTGATGATAACGATGATAATGTGGCTGCTGTGGTTGATAAGAAGCTTGGAAATGTATATAACATTGAGGAGGCTAAGAGGGTTGCTCTGGTAGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCAACCATGAGTATGGTGGTGAAAATGTTAGAAGGGTTAGTGGAGGTGGCTCTTCCACCGCCGCCTAAGTTGCTACAAGCATTGGTTACCGAGAGTCCTTTCGTGGTGTCAAGGTTGATTCAAGTAATGCGGTTTCTACTGCTGGCAGTTCATCTTTCTGCGACAACATGGAAGTGTCTGTTGCTGATTCAGAATCATGTATAG
Protein sequence

>MsG0880043141.01.T01

MTVPIYRFDFEDAYSPMASFGFTERALENGVRPPTMFRVEPFGCLWEVCVCVGEVLRVCECVKVLWRWTVVDGSGDYSGGVWRGERVFDHGDGFEDFGVVRFGFENNLTALESGGGGVWWNGNVLYVRFLVSCGDFDGVGEEEAIEGEWVGGRWVCSCVEFEGVFLQGASIGDSRFSEKLGHGGFGTVFQGELSDSTVVAVKRWRGREGLQQGVGNHERYFGYVAPEWISGVEITTKADVYSYGMTLELNCRRRRNVEAPPSSDDNDDNVAAVVDKKLGNVYNIEEAKRVALVAVWCIQDDEAMRPTMSMVVKMLEGLVEVALPPPPKLLQALVTESPFVVSRLIQVMRFLLLAVHLSATTWKCLLLIQNHV*