AlfalfaGEDB | MsG0880043218.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043218.01

KEGG: -
GO: -
PFAM: PF00412

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043218.01.T01	KEH18910.1	84.39	205	2	1	1	175	1	205	5.00E-119	345

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043218.01.T01	Q500W4	59.091	198	47	3	2	165	3	200	4.08E-79	237

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043218.01.T01	A0A072TZG0	84.390	205	2	1	1	175	1	205	2.39e-119	345

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0880043218.01.T01	TF	LIM

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043218.01.T01	MTR_8g031490	84.390	205	2	1	1	175	1	205	6.06e-123	345
MsG0880043218.01.T01	MTR_7g076720	63.768	207	43	2	1	175	1	207	8.75e-85	248
MsG0880043218.01.T01	MTR_3g070050	49.733	187	58	2	1	151	1	187	3.58e-61	188
MsG0880043218.01.T01	MTR_8g097300	45.274	201	78	4	1	172	1	198	4.69e-52	166
MsG0880043218.01.T01	MTR_1g017950	41.538	195	77	4	1	159	1	194	3.36e-45	147
MsG0880043218.01.T01	MTR_4g106800	41.143	175	68	2	2	141	3	177	7.02e-41	136
MsG0880043218.01.T01	MTR_3g070050	44.444	144	44	2	44	151	2	145	2.43e-37	126
MsG0880043218.01.T01	MTR_3g070050	53.521	71	33	0	3	73	61	131	9.79e-22	86.3
MsG0880043218.01.T01	MTR_3g070033	57.576	66	28	0	86	151	5	70	5.71e-25	92.4
MsG0880043218.01.T01	MTR_3g070033	52.459	61	29	0	22	82	5	65	1.57e-15	68.2

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043218.01.T01	AT3G61230	59.091	198	47	3	2	165	3	200	4.16e-80	237
MsG0880043218.01.T01	AT1G01780	56.500	200	57	1	1	170	1	200	1.86e-77	230
MsG0880043218.01.T01	AT2G45800	57.843	204	50	4	1	168	1	204	2.20e-76	228
MsG0880043218.01.T01	AT3G55770	54.237	177	47	2	1	143	1	177	7.59e-65	197
MsG0880043218.01.T01	AT3G55770	54.237	177	47	2	1	143	1	177	7.59e-65	197
MsG0880043218.01.T01	AT3G55770	54.237	177	47	2	1	143	1	177	7.59e-65	197
MsG0880043218.01.T01	AT3G55770	54.237	177	47	2	1	143	1	177	7.59e-65	197
MsG0880043218.01.T01	AT2G39900	51.685	178	51	2	1	143	1	178	3.59e-61	188
MsG0880043218.01.T01	AT2G45800	50.581	172	46	6	34	168	4	173	2.96e-46	150
MsG0880043218.01.T01	AT2G45800	52.113	71	34	0	3	73	68	138	2.74e-21	86.3

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 43 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTTGCTCCAAAACAA+AGG	0.575156	8:-20813177	None:intergenic
AAATCTGCACACAAGAGGAA+TGG	0.618865	8:+20813031	MsG0880043218.01.T01:CDS
AACCCTTGCTCCAAAACAAA+GGG	0.516573	8:-20813176	None:intergenic
AGTACATACTCCTCCATGGA+TGG	0.562913	8:+20811913	MsG0880043218.01.T01:CDS
AGTGCAAACCTCAGACAAAT+GGG	0.447030	8:-20811349	None:intergenic
ATAGAGAATTCCATCCATGG+AGG	0.764020	8:-20811923	None:intergenic
ATTAAACAGGTGACACTGGA+AGG	0.549370	8:+20812860	MsG0880043218.01.T01:intron
ATTCCTTCCTCCCTTTGTTT+TGG	0.250145	8:+20813166	MsG0880043218.01.T01:three_prime_UTR
CAAAATGAACCCTGCAGTAT+AGG	0.377575	8:-20812967	None:intergenic
CACACCTAAAGCATGTCTTG+TGG	0.697099	8:-20812892	None:intergenic

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGTCATTGGTATCTCATTT+AGG	-	Chr8:20811872-20811891	None:intergenic	30.0%
GAATTAGCCATATGGAAATT+AGG	+	Chr8:20812251-20812270	MsG0880043218.01.T01:intron	30.0%
TATTTGTCTTTGAATGTCTG+AGG	-	Chr8:20811399-20811418	None:intergenic	30.0%
TGTAAGCTATATAACATGAG+AGG	+	Chr8:20813259-20813278	MsG0880043218.01.T01:three_prime_UTR	30.0%
TTCAAATGTAGTCATTGCAA+GGG	+	Chr8:20811593-20811612	MsG0880043218.01.T01:CDS	30.0%
TTGTTACTGTTTCATTCAAG+AGG	-	Chr8:20813134-20813153	None:intergenic	30.0%
AAAGCAATCATACGTTTCGT+TGG	+	Chr8:20812714-20812733	MsG0880043218.01.T01:intron	35.0%
AACATGGAAGATAGTCTACT+TGG	-	Chr8:20812503-20812522	None:intergenic	35.0%
ATCATACGTTTCGTTGGATA+TGG	+	Chr8:20812720-20812739	MsG0880043218.01.T01:intron	35.0%
CTTCAAATGTAGTCATTGCA+AGG	+	Chr8:20811592-20811611	MsG0880043218.01.T01:CDS	35.0%

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	20811321	20813349	20811321	ID=MsG0880043218.01;Name=MsG0880043218.01
Chr8	mRNA	20811321	20813349	20811321	ID=MsG0880043218.01.T01;Parent=MsG0880043218.01;Name=MsG0880043218.01.T01;_AED=0.28;_eAED=0.28;_QI=170\|0.66\|1\|1\|1\|1\|4\|211\|175
Chr8	exon	20811321	20811625	20811321	ID=MsG0880043218.01.T01:exon:4211;Parent=MsG0880043218.01.T01
Chr8	exon	20811910	20812003	20811910	ID=MsG0880043218.01.T01:exon:4212;Parent=MsG0880043218.01.T01
Chr8	exon	20812135	20812163	20812135	ID=MsG0880043218.01.T01:exon:4213;Parent=MsG0880043218.01.T01
Chr8	exon	20812869	20813349	20812869	ID=MsG0880043218.01.T01:exon:4214;Parent=MsG0880043218.01.T01
Chr8	five_prime_UTR	20811321	20811490	20811321	ID=MsG0880043218.01.T01:five_prime_utr;Parent=MsG0880043218.01.T01
Chr8	CDS	20811491	20811625	20811491	ID=MsG0880043218.01.T01:cds;Parent=MsG0880043218.01.T01
Chr8	CDS	20811910	20812003	20811910	ID=MsG0880043218.01.T01:cds;Parent=MsG0880043218.01.T01
Chr8	CDS	20812135	20812163	20812135	ID=MsG0880043218.01.T01:cds;Parent=MsG0880043218.01.T01
Chr8	CDS	20812869	20813138	20812869	ID=MsG0880043218.01.T01:cds;Parent=MsG0880043218.01.T01
Chr8	three_prime_UTR	20813139	20813349	20813139	ID=MsG0880043218.01.T01:three_prime_utr;Parent=MsG0880043218.01.T01

Gene Sequence

>MsG0880043218.01.T01

ATGTCTTTCACTGGAACTCTTGATAAATGCAAGGCTTGTGACAAGACTGTTTATGTTGTTGATTTGTTAACTCTTGAAAATATTCCATACCATAAAAGCTGCTTCAAATGTAGTCATTGCAAGGGAAATCTTACGATGAGTACATACTCCTCCATGGATGGAATTCTCTATTGCAAAACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTTGCAAAGTCTTCTGACAAAGCAAATGAGCTGGTGACACTGGAAGGAGAAATCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAGCTATGCTGCTCTTGATGGTGTCCTATACTGCAGGGTTCATTTTGCACAACTTTTCATGGAGAAAGGTAACTACAGTCATGTACTCAAATCTGCACACAAGAGGAATGGTTCTTCTTCTGAATCAGTTGAAGTTGTTGAAGAGCCTTCACAATCAGCAGAAGCACCTGAAGATCATCCAGAAGAAACCTCTTGA

Protein sequence

>MsG0880043218.01.T01

MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKSCFKCSHCKGNLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKANELVTLEGEIYHKTCFRCAHAGCPLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSSESVEVVEEPSQSAEAPEDHPEETS*