AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043344.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043344.01.T01 MTR_8g032710 83.807 457 34 4 27 448 1 452 0.0 766
MsG0880043344.01.T01 MTR_4g121020 32.000 275 151 7 46 310 33 281 1.40e-26 113
MsG0880043344.01.T01 MTR_4g121020 32.000 275 151 7 46 310 33 281 1.45e-26 113
MsG0880043344.01.T01 MTR_3g086100 30.469 256 153 9 46 295 15 251 1.34e-24 107
MsG0880043344.01.T01 MTR_4g131600 28.235 255 155 6 46 295 22 253 9.13e-24 104
MsG0880043344.01.T01 MTR_1g032570 29.134 254 162 5 46 295 13 252 5.45e-23 102
MsG0880043344.01.T01 MTR_8g079940 28.846 260 150 8 46 295 27 261 1.28e-22 100
MsG0880043344.01.T01 MTR_4g131570 27.413 259 163 6 46 298 19 258 1.19e-21 98.2
MsG0880043344.01.T01 MTR_2g034960 28.253 269 168 6 46 310 31 278 3.84e-21 96.7
MsG0880043344.01.T01 MTR_3g106220 26.953 256 164 7 47 295 11 250 4.52e-21 96.7
MsG0880043344.01.T01 MTR_4g131580 26.538 260 159 6 47 298 20 255 3.55e-20 94.0
MsG0880043344.01.T01 MTR_3g086100 28.141 199 121 8 100 295 1 180 2.46e-13 72.4
MsG0880043344.01.T01 MTR_4g121020 28.934 197 108 5 121 310 6 177 3.01e-11 65.9
MsG0880043344.01.T01 MTR_7g118260 28.571 182 107 7 44 207 10 186 4.49e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043344.01.T01 AT3G16857 27.106 273 183 7 46 308 35 301 7.67e-23 102
MsG0880043344.01.T01 AT3G16857 27.106 273 183 7 46 308 35 301 8.28e-23 102
MsG0880043344.01.T01 AT2G01760 27.124 306 192 10 46 342 9 292 2.30e-22 99.0
MsG0880043344.01.T01 AT1G67710 27.863 262 153 7 46 295 9 246 2.82e-21 97.1
MsG0880043344.01.T01 AT2G25180 28.462 260 147 7 47 295 16 247 7.28e-20 92.8
MsG0880043344.01.T01 AT5G58080 27.881 269 166 8 31 295 2 246 6.16e-19 90.1
MsG0880043344.01.T01 AT2G01760 25.150 334 191 10 46 342 9 320 2.46e-18 87.4
MsG0880043344.01.T01 AT1G49190 25.979 281 162 12 46 309 32 283 2.18e-17 84.3
MsG0880043344.01.T01 AT3G16857 25.847 236 162 6 80 308 2 231 4.10e-17 84.3
MsG0880043344.01.T01 AT5G07210 26.394 269 173 7 45 295 13 274 2.00e-16 82.4
MsG0880043344.01.T01 AT5G07210 26.354 277 171 8 45 295 13 282 1.63e-15 79.3
MsG0880043344.01.T01 AT3G62670 26.493 268 157 9 49 306 42 279 2.47e-15 78.2
MsG0880043344.01.T01 AT2G40970 34.228 149 81 3 242 389 103 235 3.53e-13 69.7
MsG0880043344.01.T01 AT5G49240 22.222 252 170 6 47 292 41 272 3.19e-12 67.4
MsG0880043344.01.T01 AT2G27070 25.818 275 170 11 45 295 13 277 2.16e-11 66.6

Find 95 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTAGACCAATTGCATTT+TGG 0.197726 8:+23398924 None:intergenic
CTATGACCTCATAGGGAAAA+TGG 0.218743 8:-23399324 MsG0880043344.01.T01:CDS
ATATCACGAGCTCTTGGTTT+TGG 0.235550 8:-23399139 MsG0880043344.01.T01:CDS
GAGTGCCTCAAACTATTTAC+AGG 0.272286 8:-23398591 MsG0880043344.01.T01:intron
GTTGTCCGGAGTCACCTTTC+AGG 0.273076 8:-23398035 MsG0880043344.01.T01:CDS
AGTACTGAGTTATCTTTATC+AGG 0.287313 8:+23398836 None:intergenic
TGATTTACATAAGAAGTTCT+TGG 0.299908 8:-23398783 MsG0880043344.01.T01:CDS
GTTCTTCTTCTCACCGATAA+TGG 0.318036 8:+23399394 None:intergenic
ATAGTTTGAGGCACTCTCTT+TGG 0.318103 8:+23398598 None:intergenic
TCCGATGCATTATCCATTAT+CGG 0.329441 8:-23399407 MsG0880043344.01.T01:CDS
CTAATTAGGCCACTTTGATT+TGG 0.347358 8:-23397524 MsG0880043344.01.T01:intron
AAAACCAAGAGCTCGTGATA+TGG 0.368376 8:+23399141 None:intergenic
AGATCCTTCGGATCGGCATC+TGG 0.369128 8:+23398123 None:intergenic
ACCCTTCCACATTCATAATC+TGG 0.374739 8:+23398624 None:intergenic
TGGCTTTCTAAAACACCATT+TGG 0.375414 8:+23399114 None:intergenic
CAGCAACTATTGTTTCATAT+CGG 0.377571 8:+23399044 None:intergenic
CTTCTTTCACTTGGATATGA+AGG 0.378032 8:-23399836 MsG0880043344.01.T01:intron
ATGGAAATCTATGACCTCAT+AGG 0.387510 8:-23399332 MsG0880043344.01.T01:CDS
TCCTCAGCTTCGCCGCTGAC+TGG 0.399441 8:+23399939 None:intergenic
GCGTATGTCAGATGTGATTA+TGG 0.400977 8:-23398999 MsG0880043344.01.T01:CDS
TTTCTGATCTACATGACCTT+TGG 0.412759 8:-23399084 MsG0880043344.01.T01:CDS
TTAGGCCACTTTGATTTGGC+AGG 0.436132 8:-23397520 MsG0880043344.01.T01:intron
AGACCATTCTCCTGTATTCA+TGG 0.436149 8:+23398949 None:intergenic
ATAACTCAGTACTCCTGAAC+AGG 0.440547 8:-23398826 MsG0880043344.01.T01:CDS
CAGTACTCCTGAACAGGAAA+AGG 0.443080 8:-23398820 MsG0880043344.01.T01:CDS
CTTGGAAAGCTCAAGTTGTC+CGG 0.445175 8:-23398049 MsG0880043344.01.T01:CDS
CCTTCCATATCACGAGCTCT+TGG 0.453750 8:-23399145 MsG0880043344.01.T01:CDS
CTCCTGCATTCAAGAACGGT+TGG 0.453903 8:+23398900 None:intergenic
GACATACGCCACACGAAGTC+AGG 0.457217 8:+23399013 None:intergenic
ATAATCTGGAATATTGTCTT+CGG 0.459039 8:+23398638 None:intergenic
CTCCTGTATTCATGGATGGT+TGG 0.460192 8:+23398957 None:intergenic
TATGACCTCATAGGGAAAAT+GGG 0.462257 8:-23399323 MsG0880043344.01.T01:CDS
GTTGGTTGTGGATGCTAGTT+CGG 0.466592 8:-23399885 MsG0880043344.01.T01:CDS
TTGGAAGCTGTTGAAATAGC+AGG 0.471879 8:-23398764 MsG0880043344.01.T01:CDS
CGAGGTTAACGTTGTGCTTG+TGG 0.472776 8:-23399372 MsG0880043344.01.T01:CDS
TGAACAGGAAAAGGAAAAGC+TGG 0.472904 8:-23398811 MsG0880043344.01.T01:CDS
AAGTGCAAATGGTAAAGAAC+AGG 0.480421 8:-23398864 MsG0880043344.01.T01:CDS
AGGTCATAGATTTCCATGTC+TGG 0.480523 8:+23399338 None:intergenic
TGTAGATCAGAAATCTGAAC+TGG 0.485157 8:+23399094 None:intergenic
TCCAGTCAGCGGCGAAGCTG+AGG 0.492869 8:-23399940 MsG0880043344.01.T01:CDS
AAGACTCTCCGAAGTGCAAA+TGG 0.496589 8:-23398875 MsG0880043344.01.T01:CDS
TGCCAACCATCCATGAATAC+AGG 0.500767 8:-23398959 MsG0880043344.01.T01:CDS
ACAAACCTGTAAATAGTTTG+AGG 0.502869 8:+23398586 None:intergenic
TGGTCTCGCCAAAATGCAAT+TGG 0.505607 8:-23398932 MsG0880043344.01.T01:CDS
TGGAAATCTATGACCTCATA+GGG 0.512708 8:-23399331 MsG0880043344.01.T01:CDS
CATCTGCTGTATTCAAAACC+TGG 0.512978 8:+23397906 None:intergenic
GACCAACCGTTCTTGAATGC+AGG 0.521642 8:-23398902 MsG0880043344.01.T01:CDS
TCTGGTGGTAGTGGCGGCAT+AGG 0.521933 8:+23397800 None:intergenic
ATAGGAAGCACCATGCATAA+TGG 0.522991 8:+23397818 None:intergenic
AACTCAGCTGTTTAGTGATG+AGG 0.525191 8:-23397738 MsG0880043344.01.T01:CDS
GATGGAGAAGTTTCTAATGC+AGG 0.527317 8:-23397887 MsG0880043344.01.T01:CDS
CATTCTCCTGTATTCATGGA+TGG 0.527538 8:+23398953 None:intergenic
TTCCAGATTATGAATGTGGA+AGG 0.529710 8:-23398626 MsG0880043344.01.T01:CDS
GAACCTACGTGCTACTGCAA+TGG 0.529949 8:-23398229 MsG0880043344.01.T01:CDS
GTTCTTTACCATTTGCACTT+CGG 0.531052 8:+23398867 None:intergenic
GGAGGTTCAGTTGCCAGACA+TGG 0.533668 8:-23399351 MsG0880043344.01.T01:CDS
ACAAAATTACTGAGATCCTT+CGG 0.535642 8:+23398111 None:intergenic
AGGTACCATGGTCCAGTAGC+CGG 0.537071 8:-23399917 MsG0880043344.01.T01:CDS
ACTAGAACTTACTGAAAGAC+GGG 0.544678 8:+23399285 None:intergenic
CACTAGAACTTACTGAAAGA+CGG 0.548552 8:+23399284 None:intergenic
CGGACAACTTGAGCTTTCCA+AGG 0.549307 8:+23398050 None:intergenic
GTGATGAGGATTTGAATATG+TGG 0.554179 8:-23397724 MsG0880043344.01.T01:CDS
AATATTCCAGATTATGAATG+TGG 0.565218 8:-23398630 MsG0880043344.01.T01:CDS
CATCCATGAATACAGGAGAA+TGG 0.575042 8:-23398952 MsG0880043344.01.T01:CDS
AAACATTTGTTGAGTGAGAG+AGG 0.579912 8:+23400019 None:intergenic
AACATTTGTTGAGTGAGAGA+GGG 0.582072 8:+23400020 None:intergenic
TGGTTGGCATTCGAGACCCT+TGG 0.583630 8:+23398973 None:intergenic
AGTCAGCGGCGAAGCTGAGG+AGG 0.585284 8:-23399937 MsG0880043344.01.T01:CDS
TCCACACTGCGAATCGCCAA+AGG 0.589805 8:+23399068 None:intergenic
TGATCCAGATGCCGATCCGA+AGG 0.594251 8:-23398127 MsG0880043344.01.T01:CDS
ACCGATAATGGATAATGCAT+CGG 0.594739 8:+23399406 None:intergenic
TCCAGATTATGAATGTGGAA+GGG 0.595446 8:-23398625 MsG0880043344.01.T01:CDS
GGACAACTTGAGCTTTCCAA+GGG 0.606529 8:+23398051 None:intergenic
GGTTAACGTTGTGCTTGTGG+AGG 0.607244 8:-23399369 MsG0880043344.01.T01:CDS
TCTCGGACTAACAAAAGTCA+AGG 0.607987 8:-23398183 MsG0880043344.01.T01:CDS
AGATGTGATTATGGCAACCA+AGG 0.609212 8:-23398990 MsG0880043344.01.T01:CDS
ACCTTTGGCGATTCGCAGTG+TGG 0.611049 8:-23399069 MsG0880043344.01.T01:CDS
CCAAGAGCTCGTGATATGGA+AGG 0.615756 8:+23399145 None:intergenic
TTACACCGGCTACTGGACCA+TGG 0.619788 8:+23399912 None:intergenic
AGTAGCCGGTGTAAAAGTGT+TGG 0.620685 8:-23399903 MsG0880043344.01.T01:CDS
ATGTGGTTATCAACGATTCG+AGG 0.622106 8:-23397707 MsG0880043344.01.T01:intron
GATGTGATTATGGCAACCAA+GGG 0.624431 8:-23398989 MsG0880043344.01.T01:CDS
CATTGCCTGCCAAATCAAAG+TGG 0.629641 8:+23397515 None:intergenic
AAGCAGTACCTGACTTCGTG+TGG 0.630968 8:-23399021 MsG0880043344.01.T01:CDS
GAAGTGTCAAGAATATGCAC+AGG 0.635227 8:+23398087 None:intergenic
GTTGAAATAGCAGGAATCGA+CGG 0.638995 8:-23398755 MsG0880043344.01.T01:intron
GTCTGACGAGTTCCAGTCAG+CGG 0.643494 8:-23399951 MsG0880043344.01.T01:CDS
GCGAAGCTGAGGAGGTACCA+TGG 0.649372 8:-23399929 MsG0880043344.01.T01:CDS
CGGTGTAAAAGTGTTGGTTG+TGG 0.652064 8:-23399897 MsG0880043344.01.T01:CDS
ATGTGAATGAATATGTGTCT+CGG 0.664181 8:-23398200 MsG0880043344.01.T01:CDS
ATTACTGAGATCCTTCGGAT+CGG 0.667987 8:+23398116 None:intergenic
GTTCCATTGCAGTAGCACGT+AGG 0.677485 8:+23398226 None:intergenic
CATGTGCGAACCATTATGCA+TGG 0.704435 8:-23397828 MsG0880043344.01.T01:CDS
TCGCACATGTCAAAGCTCAG+CGG 0.744624 8:+23397842 None:intergenic
TATCGGTGAGAAGAAGAACG+AGG 0.774295 8:-23399390 MsG0880043344.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATGATAAATAAAA+AGG + Chr8:23399952-23399971 None:intergenic 10.0%
!! GTTTCAAAAATAAATAAAAA+TGG + Chr8:23398057-23398076 None:intergenic 10.0%
!! TTTGTTAAAAATTTCTAATT+AGG - Chr8:23399994-23400013 MsG0880043344.01.T01:CDS 10.0%
!! AGAATATCTGTAAATAATAA+TGG + Chr8:23399929-23399948 None:intergenic 15.0%
!! ATCAATATGATTATTCATTA+TGG - Chr8:23397869-23397888 MsG0880043344.01.T01:CDS 15.0%
!!! AATAATCATATTGATTTCTA+TGG + Chr8:23397864-23397883 None:intergenic 15.0%
!!! TTTTTAATTTTTGCTTCTTA+AGG - Chr8:23398009-23398028 MsG0880043344.01.T01:intron 15.0%
!! AAACAATCAAATGTACTATT+AGG + Chr8:23399263-23399282 None:intergenic 20.0%
!! GAAGCAAAAATTAAAAATCA+CGG + Chr8:23398006-23398025 None:intergenic 20.0%
!!! GATAAGTTTTTTTATGCAAA+AGG - Chr8:23399771-23399790 MsG0880043344.01.T01:intron 20.0%
! AATATTCCAGATTATGAATG+TGG - Chr8:23398902-23398921 MsG0880043344.01.T01:CDS 25.0%
! TGATTTACATAAGAAGTTCT+TGG - Chr8:23398749-23398768 MsG0880043344.01.T01:intron 25.0%
!! ATAATCTGGAATATTGTCTT+CGG + Chr8:23398897-23398916 None:intergenic 25.0%
!! GCATTTTTGATACAATTGTT+CGG + Chr8:23397677-23397696 None:intergenic 25.0%
!! TAAAGTCTGAAACTCAAAAT+AGG - Chr8:23399068-23399087 MsG0880043344.01.T01:CDS 25.0%
!! TGGAAATATCTGAAACTTTA+AGG + Chr8:23397817-23397836 None:intergenic 25.0%
!!! AATTTCAGTTATGTTTTAGC+AGG - Chr8:23399170-23399189 MsG0880043344.01.T01:CDS 25.0%
!!! ATCAAAACTTGTTTTTCTAG+AGG + Chr8:23399382-23399401 None:intergenic 25.0%
!!! TCAAAACTTGTTTTTCTAGA+GGG + Chr8:23399381-23399400 None:intergenic 25.0%
AAGGTAATTGACACTTATTC+TGG - Chr8:23397715-23397734 MsG0880043344.01.T01:CDS 30.0%
ACAAAATTACTGAGATCCTT+CGG + Chr8:23399424-23399443 None:intergenic 30.0%
ACAAACCTGTAAATAGTTTG+AGG + Chr8:23398949-23398968 None:intergenic 30.0%
ATGTGAATGAATATGTGTCT+CGG - Chr8:23399332-23399351 MsG0880043344.01.T01:CDS 30.0%
CAGATACATCATCATTAACA+CGG + Chr8:23399596-23399615 None:intergenic 30.0%
CAGCAACTATTGTTTCATAT+CGG + Chr8:23398491-23398510 None:intergenic 30.0%
CTTCTTAAGGCTAAACTATT+GGG - Chr8:23398022-23398041 MsG0880043344.01.T01:intron 30.0%
TAGATAAACTGCTAGAAATG+TGG + Chr8:23397837-23397856 None:intergenic 30.0%
TCAAAAATGCTTCTTTCACT+TGG - Chr8:23397687-23397706 MsG0880043344.01.T01:intron 30.0%
! AGTACTGAGTTATCTTTATC+AGG + Chr8:23398699-23398718 None:intergenic 30.0%
! CATTTTACTCTCTTCTATCA+TGG - Chr8:23397557-23397576 MsG0880043344.01.T01:intron 30.0%
! TACAGGTTTGTTCTTTGTAA+TGG - Chr8:23398958-23398977 MsG0880043344.01.T01:CDS 30.0%
! TTTTTAATAACCGACATGTG+TGG - Chr8:23399019-23399038 MsG0880043344.01.T01:CDS 30.0%
!!! TCATAGTATGCTTTTTCATC+TGG + Chr8:23399753-23399772 None:intergenic 30.0%
AAACTCAAAATAGGCACACT+TGG - Chr8:23399077-23399096 MsG0880043344.01.T01:CDS 35.0%
AACTCAAAATAGGCACACTT+GGG - Chr8:23399078-23399097 MsG0880043344.01.T01:CDS 35.0%
AAGTGCAAATGGTAAAGAAC+AGG - Chr8:23398668-23398687 MsG0880043344.01.T01:intron 35.0%
ACACGGTTTATAAACTACCA+AGG + Chr8:23399579-23399598 None:intergenic 35.0%
ACTAGAACTTACTGAAAGAC+GGG + Chr8:23398250-23398269 None:intergenic 35.0%
ATGGAAATCTATGACCTCAT+AGG - Chr8:23398200-23398219 MsG0880043344.01.T01:CDS 35.0%
ATTAATTTCTGCTGTGCTAG+TGG - Chr8:23398824-23398843 MsG0880043344.01.T01:CDS 35.0%
CACTAGAACTTACTGAAAGA+CGG + Chr8:23398251-23398270 None:intergenic 35.0%
CTTCTTTCACTTGGATATGA+AGG - Chr8:23397696-23397715 MsG0880043344.01.T01:intron 35.0%
GCTTCTTAAGGCTAAACTAT+TGG - Chr8:23398021-23398040 MsG0880043344.01.T01:intron 35.0%
GTGATGAGGATTTGAATATG+TGG - Chr8:23399808-23399827 MsG0880043344.01.T01:intron 35.0%
GTTCTTTACCATTTGCACTT+CGG + Chr8:23398668-23398687 None:intergenic 35.0%
TATGACCTCATAGGGAAAAT+GGG - Chr8:23398209-23398228 MsG0880043344.01.T01:CDS 35.0%
TCCAGATTATGAATGTGGAA+GGG - Chr8:23398907-23398926 MsG0880043344.01.T01:CDS 35.0%
TCCGATGCATTATCCATTAT+CGG - Chr8:23398125-23398144 MsG0880043344.01.T01:CDS 35.0%
TGGAAATCTATGACCTCATA+GGG - Chr8:23398201-23398220 MsG0880043344.01.T01:CDS 35.0%
TGTAGATCAGAAATCTGAAC+TGG + Chr8:23398441-23398460 None:intergenic 35.0%
TTCCAGATTATGAATGTGGA+AGG - Chr8:23398906-23398925 MsG0880043344.01.T01:CDS 35.0%
TTTCTGATCTACATGACCTT+TGG - Chr8:23398448-23398467 MsG0880043344.01.T01:intron 35.0%
! AAACATTTGTTGAGTGAGAG+AGG + Chr8:23397516-23397535 None:intergenic 35.0%
! AACATTTGTTGAGTGAGAGA+GGG + Chr8:23397515-23397534 None:intergenic 35.0%
! CTAATTAGGCCACTTTGATT+TGG - Chr8:23400008-23400027 MsG0880043344.01.T01:CDS 35.0%
! CTTCTAGACCAATTGCATTT+TGG + Chr8:23398611-23398630 None:intergenic 35.0%
! TTTTCTCCTGCATTCAAGAA+CGG + Chr8:23398639-23398658 None:intergenic 35.0%
!! ACCGATAATGGATAATGCAT+CGG + Chr8:23398129-23398148 None:intergenic 35.0%
!! TCTGTTTCTGCATTATCATG+TGG - Chr8:23399223-23399242 MsG0880043344.01.T01:intron 35.0%
!! TGGCTTTCTAAAACACCATT+TGG + Chr8:23398421-23398440 None:intergenic 35.0%
!!! TAGTATGCTTTTTCATCTGG+TGG + Chr8:23399750-23399769 None:intergenic 35.0%
AAAACCAAGAGCTCGTGATA+TGG + Chr8:23398394-23398413 None:intergenic 40.0%
AACTCAGCTGTTTAGTGATG+AGG - Chr8:23399794-23399813 MsG0880043344.01.T01:intron 40.0%
AACTTTCCAGTAATCCCCAA+TGG + Chr8:23399125-23399144 None:intergenic 40.0%
ACCCTTCCACATTCATAATC+TGG + Chr8:23398911-23398930 None:intergenic 40.0%
ACTACTACACTCACATTTCG+TGG - Chr8:23397788-23397807 MsG0880043344.01.T01:CDS 40.0%
ACTCAAAATAGGCACACTTG+GGG - Chr8:23399079-23399098 MsG0880043344.01.T01:CDS 40.0%
AGACCATTCTCCTGTATTCA+TGG + Chr8:23398586-23398605 None:intergenic 40.0%
AGATGTGATTATGGCAACCA+AGG - Chr8:23398542-23398561 MsG0880043344.01.T01:intron 40.0%
AGGTCATAGATTTCCATGTC+TGG + Chr8:23398197-23398216 None:intergenic 40.0%
ATAACTCAGTACTCCTGAAC+AGG - Chr8:23398706-23398725 MsG0880043344.01.T01:intron 40.0%
ATGTGGTTATCAACGATTCG+AGG - Chr8:23399825-23399844 MsG0880043344.01.T01:intron 40.0%
ATTACTGAGATCCTTCGGAT+CGG + Chr8:23399419-23399438 None:intergenic 40.0%
CACGCGCAATGATATATTAC+TGG + Chr8:23399861-23399880 None:intergenic 40.0%
CATCCATGAATACAGGAGAA+TGG - Chr8:23398580-23398599 MsG0880043344.01.T01:intron 40.0%
CATCTGCTGTATTCAAAACC+TGG + Chr8:23399629-23399648 None:intergenic 40.0%
CATTCTCCTGTATTCATGGA+TGG + Chr8:23398582-23398601 None:intergenic 40.0%
CTATGACCTCATAGGGAAAA+TGG - Chr8:23398208-23398227 MsG0880043344.01.T01:CDS 40.0%
GAGTGCCTCAAACTATTTAC+AGG - Chr8:23398941-23398960 MsG0880043344.01.T01:CDS 40.0%
GATGGAGAAGTTTCTAATGC+AGG - Chr8:23399645-23399664 MsG0880043344.01.T01:intron 40.0%
GATGTGATTATGGCAACCAA+GGG - Chr8:23398543-23398562 MsG0880043344.01.T01:intron 40.0%
GCGTATGTCAGATGTGATTA+TGG - Chr8:23398533-23398552 MsG0880043344.01.T01:intron 40.0%
GGTTTATAAACTACCAAGGC+TGG + Chr8:23399575-23399594 None:intergenic 40.0%
GTTCTTCTTCTCACCGATAA+TGG + Chr8:23398141-23398160 None:intergenic 40.0%
GTTGAAATAGCAGGAATCGA+CGG - Chr8:23398777-23398796 MsG0880043344.01.T01:CDS 40.0%
TCTCGGACTAACAAAAGTCA+AGG - Chr8:23399349-23399368 MsG0880043344.01.T01:CDS 40.0%
TGAACAGGAAAAGGAAAAGC+TGG - Chr8:23398721-23398740 MsG0880043344.01.T01:intron 40.0%
TGTATCTGAAAAGATCAGCC+AGG - Chr8:23399608-23399627 MsG0880043344.01.T01:intron 40.0%
TTGGAAGCTGTTGAAATAGC+AGG - Chr8:23398768-23398787 MsG0880043344.01.T01:CDS 40.0%
TTTACATCAAGCAGTACGCT+TGG + Chr8:23399052-23399071 None:intergenic 40.0%
! AGCTTTTCCTTTTCCTGTTC+AGG + Chr8:23398722-23398741 None:intergenic 40.0%
! ATAGTTTGAGGCACTCTCTT+TGG + Chr8:23398937-23398956 None:intergenic 40.0%
! ATATCACGAGCTCTTGGTTT+TGG - Chr8:23398393-23398412 MsG0880043344.01.T01:intron 40.0%
! ATTCTCCCATTTTCCCTATG+AGG + Chr8:23398217-23398236 None:intergenic 40.0%
! CACAACCAACACTTTTACAC+CGG + Chr8:23397637-23397656 None:intergenic 40.0%
! GAAGTGTCAAGAATATGCAC+AGG + Chr8:23399448-23399467 None:intergenic 40.0%
! GTAAGTTCTAGTGCTAGCTT+TGG - Chr8:23398258-23398277 MsG0880043344.01.T01:intron 40.0%
! TGGACATTTTCCACACATGT+CGG + Chr8:23399032-23399051 None:intergenic 40.0%
!! ATAGGAAGCACCATGCATAA+TGG + Chr8:23399717-23399736 None:intergenic 40.0%
!!! CAGGTTTTGAATACAGCAGA+TGG - Chr8:23399627-23399646 MsG0880043344.01.T01:intron 40.0%
!!! TTCTGCTACTTTTCTTCCCT+TGG - Chr8:23399465-23399484 MsG0880043344.01.T01:intron 40.0%
AAGACTCTCCGAAGTGCAAA+TGG - Chr8:23398657-23398676 MsG0880043344.01.T01:intron 45.0%
CAGTACTCCTGAACAGGAAA+AGG - Chr8:23398712-23398731 MsG0880043344.01.T01:intron 45.0%
CATGTGCGAACCATTATGCA+TGG - Chr8:23399704-23399723 MsG0880043344.01.T01:intron 45.0%
CATTGCCTGCCAAATCAAAG+TGG + Chr8:23400020-23400039 None:intergenic 45.0%
CTCCTGTATTCATGGATGGT+TGG + Chr8:23398578-23398597 None:intergenic 45.0%
GGACAACTTGAGCTTTCCAA+GGG + Chr8:23399484-23399503 None:intergenic 45.0%
GTTGGTTGTGGATGCTAGTT+CGG - Chr8:23397647-23397666 MsG0880043344.01.T01:intron 45.0%
TAAACTACCAAGGCTGGATG+TGG + Chr8:23399569-23399588 None:intergenic 45.0%
TATCGGTGAGAAGAAGAACG+AGG - Chr8:23398142-23398161 MsG0880043344.01.T01:CDS 45.0%
TGCCAACCATCCATGAATAC+AGG - Chr8:23398573-23398592 MsG0880043344.01.T01:intron 45.0%
TGGTCTCGCCAAAATGCAAT+TGG - Chr8:23398600-23398619 MsG0880043344.01.T01:CDS 45.0%
TTCCAGTAATCCCCAATGGT+GGG + Chr8:23399121-23399140 None:intergenic 45.0%
TTGTCGTTCTTGTGTGAAGC+TGG - Chr8:23398870-23398889 MsG0880043344.01.T01:CDS 45.0%
TTTCCAGTAATCCCCAATGG+TGG + Chr8:23399122-23399141 None:intergenic 45.0%
! AGTAGCCGGTGTAAAAGTGT+TGG - Chr8:23397629-23397648 MsG0880043344.01.T01:intron 45.0%
! CTTGGAAAGCTCAAGTTGTC+CGG - Chr8:23399483-23399502 MsG0880043344.01.T01:intron 45.0%
! TTTTGCCTGAAAGGTGACTC+CGG + Chr8:23399505-23399524 None:intergenic 45.0%
!! AACACTTTTACACCGGCTAC+TGG + Chr8:23397630-23397649 None:intergenic 45.0%
!! ACTTTGCTGTTCCAATGGCA+GGG + Chr8:23399536-23399555 None:intergenic 45.0%
!! CGGTGTAAAAGTGTTGGTTG+TGG - Chr8:23397635-23397654 MsG0880043344.01.T01:intron 45.0%
!! GACAGCTGATTTTGCCTGAA+AGG + Chr8:23399514-23399533 None:intergenic 45.0%
!! TTAGGCCACTTTGATTTGGC+AGG - Chr8:23400012-23400031 MsG0880043344.01.T01:CDS 45.0%
!!! CTCTTGGTTTTGGAGCCAAA+TGG - Chr8:23398403-23398422 MsG0880043344.01.T01:intron 45.0%
!!! GCTTTTTCATCTGGTGGTAG+TGG + Chr8:23399744-23399763 None:intergenic 45.0%
!!! TTTTCATCTGGTGGTAGTGG+CGG + Chr8:23399741-23399760 None:intergenic 45.0%
!!! ATTTTTTATATTTATATTTC+TGG - Chr8:23397750-23397769 MsG0880043344.01.T01:CDS 5.0%
AAATCAGCTGTCCCTGCCAT+TGG - Chr8:23399522-23399541 MsG0880043344.01.T01:intron 50.0%
AAGCAGTACCTGACTTCGTG+TGG - Chr8:23398511-23398530 MsG0880043344.01.T01:intron 50.0%
ATCTCAGCGACAAGCATGTG+AGG + Chr8:23398302-23398321 None:intergenic 50.0%
CCAAGAGCTCGTGATATGGA+AGG + Chr8:23398390-23398409 None:intergenic 50.0%
CCTTCCATATCACGAGCTCT+TGG - Chr8:23398387-23398406 MsG0880043344.01.T01:intron 50.0%
CGAGGTTAACGTTGTGCTTG+TGG - Chr8:23398160-23398179 MsG0880043344.01.T01:CDS 50.0%
CGGACAACTTGAGCTTTCCA+AGG + Chr8:23399485-23399504 None:intergenic 50.0%
CTCCTGCATTCAAGAACGGT+TGG + Chr8:23398635-23398654 None:intergenic 50.0%
GACCAACCGTTCTTGAATGC+AGG - Chr8:23398630-23398649 MsG0880043344.01.T01:CDS 50.0%
GGTTAACGTTGTGCTTGTGG+AGG - Chr8:23398163-23398182 MsG0880043344.01.T01:CDS 50.0%
GTTCCATTGCAGTAGCACGT+AGG + Chr8:23399309-23399328 None:intergenic 50.0%
TAATCGAGGCTCCCACCATT+GGG - Chr8:23399107-23399126 MsG0880043344.01.T01:CDS 50.0%
TATATCATTGCGCGTGCGCT+CGG - Chr8:23399865-23399884 MsG0880043344.01.T01:CDS 50.0%
TCGCACATGTCAAAGCTCAG+CGG + Chr8:23399693-23399712 None:intergenic 50.0%
! GAACCTACGTGCTACTGCAA+TGG - Chr8:23399303-23399322 MsG0880043344.01.T01:CDS 50.0%
!! GACTTTGCTGTTCCAATGGC+AGG + Chr8:23399537-23399556 None:intergenic 50.0%
!! GCAGGACTTTGCTGTTCCAA+TGG + Chr8:23399541-23399560 None:intergenic 50.0%
AAATAGGCACACTTGGGGCC+TGG - Chr8:23399084-23399103 MsG0880043344.01.T01:CDS 55.0%
AATCGAGGCTCCCACCATTG+GGG - Chr8:23399108-23399127 MsG0880043344.01.T01:CDS 55.0%
ACCTTTGGCGATTCGCAGTG+TGG - Chr8:23398463-23398482 MsG0880043344.01.T01:intron 55.0%
AGATCCTTCGGATCGGCATC+TGG + Chr8:23399412-23399431 None:intergenic 55.0%
AGGTACCATGGTCCAGTAGC+CGG - Chr8:23397615-23397634 MsG0880043344.01.T01:intron 55.0%
ATATCATTGCGCGTGCGCTC+GGG - Chr8:23399866-23399885 MsG0880043344.01.T01:CDS 55.0%
CTCCCACCATTGGGGATTAC+TGG - Chr8:23399116-23399135 MsG0880043344.01.T01:CDS 55.0%
GACATACGCCACACGAAGTC+AGG + Chr8:23398522-23398541 None:intergenic 55.0%
GGAGGTTCAGTTGCCAGACA+TGG - Chr8:23398181-23398200 MsG0880043344.01.T01:CDS 55.0%
GTAATCGAGGCTCCCACCAT+TGG - Chr8:23399106-23399125 MsG0880043344.01.T01:CDS 55.0%
GTCTGACGAGTTCCAGTCAG+CGG - Chr8:23397581-23397600 MsG0880043344.01.T01:intron 55.0%
GTTGTCCGGAGTCACCTTTC+AGG - Chr8:23399497-23399516 MsG0880043344.01.T01:intron 55.0%
TCCACACTGCGAATCGCCAA+AGG + Chr8:23398467-23398486 None:intergenic 55.0%
TGATCCAGATGCCGATCCGA+AGG - Chr8:23399405-23399424 MsG0880043344.01.T01:CDS 55.0%
TGGTTGGCATTCGAGACCCT+TGG + Chr8:23398562-23398581 None:intergenic 55.0%
TGTAGACTCACTCGTGCTCG+CGG + Chr8:23399892-23399911 None:intergenic 55.0%
! TTACACCGGCTACTGGACCA+TGG + Chr8:23397623-23397642 None:intergenic 55.0%
CACTTGGGGCCTGGTAATCG+AGG - Chr8:23399093-23399112 MsG0880043344.01.T01:CDS 60.0%
TGGTGGGAGCCTCGATTACC+AGG + Chr8:23399105-23399124 None:intergenic 60.0%
!! GCGAAGCTGAGGAGGTACCA+TGG - Chr8:23397603-23397622 MsG0880043344.01.T01:intron 60.0%
!! TCTGGTGGTAGTGGCGGCAT+AGG + Chr8:23399735-23399754 None:intergenic 60.0%
AGGCTGGATGTGGTGTGCGC+AGG + Chr8:23399559-23399578 None:intergenic 65.0%
AGTCAGCGGCGAAGCTGAGG+AGG - Chr8:23397595-23397614 MsG0880043344.01.T01:intron 65.0%
GCGCACACCACATCCAGCCT+TGG - Chr8:23399559-23399578 MsG0880043344.01.T01:intron 65.0%
TCCAGTCAGCGGCGAAGCTG+AGG - Chr8:23397592-23397611 MsG0880043344.01.T01:intron 65.0%
TCCTCAGCTTCGCCGCTGAC+TGG + Chr8:23397596-23397615 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 23397498 23400056 23397498 ID=MsG0880043344.01;Name=MsG0880043344.01
Chr8 mRNA 23397498 23400056 23397498 ID=MsG0880043344.01.T01;Parent=MsG0880043344.01;Name=MsG0880043344.01.T01;_AED=0.10;_eAED=0.11;_QI=0|0|0|0.85|1|1|7|0|460
Chr8 exon 23399837 23400056 23399837 ID=MsG0880043344.01.T01:exon:8563;Parent=MsG0880043344.01.T01
Chr8 exon 23399297 23399440 23399297 ID=MsG0880043344.01.T01:exon:8562;Parent=MsG0880043344.01.T01
Chr8 exon 23398756 23399193 23398756 ID=MsG0880043344.01.T01:exon:8561;Parent=MsG0880043344.01.T01
Chr8 exon 23398592 23398665 23398592 ID=MsG0880043344.01.T01:exon:8560;Parent=MsG0880043344.01.T01
Chr8 exon 23398024 23398268 23398024 ID=MsG0880043344.01.T01:exon:8559;Parent=MsG0880043344.01.T01
Chr8 exon 23397708 23397928 23397708 ID=MsG0880043344.01.T01:exon:8558;Parent=MsG0880043344.01.T01
Chr8 exon 23397498 23397538 23397498 ID=MsG0880043344.01.T01:exon:8557;Parent=MsG0880043344.01.T01
Chr8 CDS 23399837 23400056 23399837 ID=MsG0880043344.01.T01:cds;Parent=MsG0880043344.01.T01
Chr8 CDS 23399297 23399440 23399297 ID=MsG0880043344.01.T01:cds;Parent=MsG0880043344.01.T01
Chr8 CDS 23398756 23399193 23398756 ID=MsG0880043344.01.T01:cds;Parent=MsG0880043344.01.T01
Chr8 CDS 23398592 23398665 23398592 ID=MsG0880043344.01.T01:cds;Parent=MsG0880043344.01.T01
Chr8 CDS 23398024 23398268 23398024 ID=MsG0880043344.01.T01:cds;Parent=MsG0880043344.01.T01
Chr8 CDS 23397708 23397928 23397708 ID=MsG0880043344.01.T01:cds;Parent=MsG0880043344.01.T01
Chr8 CDS 23397498 23397538 23397498 ID=MsG0880043344.01.T01:cds;Parent=MsG0880043344.01.T01
Gene Sequence

>MsG0880043344.01.T01

ATGCTCAATGTGCTCCCTCTCTCACTCAACAAATGTTTGCACTCAGATCAACTTCTCTGCATTTTACTCTCTTCTATCATGGAGTCTGACGAGTTCCAGTCAGCGGCGAAGCTGAGGAGGTACCATGGTCCAGTAGCCGGTGTAAAAGTGTTGGTTGTGGATGCTAGTTCGGCATGCCGAACAATTGTATCAAAAATGCTTCTTTCACTTGGATATGAAGCTTCACTAGCTTCCGATGCATTATCCATTATCGGTGAGAAGAAGAACGAGGTTAACGTTGTGCTTGTGGAGGTTCAGTTGCCAGACATGGAAATCTATGACCTCATAGGGAAAATGGGAGAATGCTCTAATCTCCCGTCTTTCATTATGACTTCTTATGATGATGACACTCCTTCCATATCACGAGCTCTTGGTTTTGGAGCCAAATGGTGTTTTAGAAAGCCAGTTCAGATTTCTGATCTACATGACCTTTGGCGATTCGCAGTGTGGAACCGATATGAAACAATAGTTGCTGAAGCAGTACCTGACTTCGTGTGGCGTATGTCAGATGTGATTATGGCAACCAAGGGTCTCGAATGCCAACCATCCATGAATACAGGAGAATGGTCTCGCCAAAATGCAATTGGTCTAGAAGACCAACCGTTCTTGAATGCAGGAGAAAAGACTCTCCGAAGTGCAAATGGTAAAGAACAGGAATTTCCTGATAAAGATAACTCAGTACTCCTGAACAGGAAAAGGAAAAGCTGGACTGATGATTTACATAAGAAGTTCTTGGAAGCTGTTGAAATAGCAGGAATCGACGCTGGTCCGAAGACAATATTCCAGATTATGAATGTGGAAGGGTTTACCAAAGAGAGTGCCTCAAACTATTTACAGAGATATCGTCAATCTATGAACCTACGTGCTACTGCAATGGAACAGCATGTGAATGAATATGTGTCTCGGACTAACAAAAGTCAAGGAAAACGCCCTCTAGAAAAACAAGTTTTGATCAATGATCCAGATGCCGATCCGAAGGATCTCAGTAATTTTGTGCCTGTGCATATTCTTGACACTTCTGCTACTTTTCTTCCCTTGGAAAGCTCAAGTTGTCCGGAGTCACCTTTCAGGCAAAATCAGCTCCAGGTTTTGAATACAGCAGATGGAGAAGTTTCTAATGCAGGACAACAGTTGAATTTTTCAACACCGCTGAGCTTTGACATGTGCGAACCATTATGCATGGTGCTTCCTATGCCGCCACTACCACCAGATGAAAAAGCATACTATGATAAGTTTTTTTATGCAAAAGGAACTCAGCTGTTTAGTGATGAGGATTTGAATATGTGGTTATCAACGATTCGAGGCCACTTTGATTTGGCAGGCAATGTGAATGCTTTTGCTTGA
Protein sequence

>MsG0880043344.01.T01

MLNVLPLSLNKCLHSDQLLCILLSSIMESDEFQSAAKLRRYHGPVAGVKVLVVDASSACRTIVSKMLLSLGYEASLASDALSIIGEKKNEVNVVLVEVQLPDMEIYDLIGKMGECSNLPSFIMTSYDDDTPSISRALGFGAKWCFRKPVQISDLHDLWRFAVWNRYETIVAEAVPDFVWRMSDVIMATKGLECQPSMNTGEWSRQNAIGLEDQPFLNAGEKTLRSANGKEQEFPDKDNSVLLNRKRKSWTDDLHKKFLEAVEIAGIDAGPKTIFQIMNVEGFTKESASNYLQRYRQSMNLRATAMEQHVNEYVSRTNKSQGKRPLEKQVLINDPDADPKDLSNFVPVHILDTSATFLPLESSSCPESPFRQNQLQVLNTADGEVSNAGQQLNFSTPLSFDMCEPLCMVLPMPPLPPDEKAYYDKFFYAKGTQLFSDEDLNMWLSTIRGHFDLAGNVNAFA*