Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045515.01.T01 | XP_003629092.1 | 85.841 | 226 | 31 | 1 | 1 | 226 | 1 | 225 | 1.68E-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045515.01.T01 | Q8S9H7 | 55.319 | 47 | 21 | 0 | 103 | 149 | 132 | 178 | 1.51E-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045515.01.T01 | G7L8N4 | 85.841 | 226 | 31 | 1 | 1 | 226 | 1 | 225 | 8.04e-117 | 342 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0880045515.01.T01 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045515.01.T01 | MTR_8g073050 | 85.841 | 226 | 31 | 1 | 1 | 226 | 1 | 225 | 2.04e-120 | 342 |
| MsG0880045515.01.T01 | MTR_6g043480 | 59.052 | 232 | 86 | 6 | 1 | 225 | 1 | 230 | 1.37e-70 | 215 |
| MsG0880045515.01.T01 | MTR_6g043490 | 58.369 | 233 | 86 | 6 | 1 | 225 | 1 | 230 | 1.04e-67 | 208 |
| MsG0880045515.01.T01 | MTR_8g072990 | 52.000 | 250 | 85 | 9 | 1 | 224 | 1 | 241 | 3.94e-62 | 194 |
| MsG0880045515.01.T01 | MTR_5g027570 | 39.726 | 73 | 44 | 0 | 94 | 166 | 83 | 155 | 2.67e-14 | 70.1 |
| MsG0880045515.01.T01 | MTR_1g048660 | 42.667 | 75 | 39 | 1 | 104 | 174 | 13 | 87 | 4.26e-13 | 63.5 |
| MsG0880045515.01.T01 | MTR_7g067080 | 36.735 | 98 | 53 | 3 | 57 | 149 | 93 | 186 | 7.11e-13 | 67.0 |
| MsG0880045515.01.T01 | MTR_8g063870 | 36.634 | 101 | 47 | 2 | 90 | 173 | 68 | 168 | 9.36e-13 | 66.2 |
| MsG0880045515.01.T01 | MTR_5g069710 | 35.644 | 101 | 48 | 3 | 57 | 149 | 87 | 178 | 2.21e-12 | 65.5 |
| MsG0880045515.01.T01 | MTR_4g111975 | 49.057 | 53 | 27 | 0 | 100 | 152 | 135 | 187 | 2.29e-12 | 65.5 |
| MsG0880045515.01.T01 | MTR_3g462790 | 53.191 | 47 | 22 | 0 | 103 | 149 | 147 | 193 | 2.68e-12 | 65.5 |
| MsG0880045515.01.T01 | MTR_5g081860 | 53.191 | 47 | 22 | 0 | 103 | 149 | 125 | 171 | 2.79e-12 | 64.7 |
| MsG0880045515.01.T01 | MTR_4g100630 | 46.667 | 60 | 32 | 0 | 90 | 149 | 82 | 141 | 3.98e-12 | 64.7 |
| MsG0880045515.01.T01 | MTR_2g100930 | 36.170 | 94 | 50 | 1 | 56 | 149 | 72 | 155 | 6.82e-12 | 64.3 |
| MsG0880045515.01.T01 | MTR_1g111830 | 39.326 | 89 | 48 | 2 | 96 | 184 | 117 | 199 | 1.77e-11 | 62.4 |
| MsG0880045515.01.T01 | MTR_6g092540 | 40.244 | 82 | 37 | 2 | 103 | 173 | 97 | 177 | 4.00e-11 | 61.6 |
| MsG0880045515.01.T01 | MTR_8g101650 | 50.980 | 51 | 25 | 0 | 103 | 153 | 105 | 155 | 5.83e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045515.01.T01 | AT5G58900 | 55.319 | 47 | 21 | 0 | 103 | 149 | 141 | 187 | 9.24e-13 | 66.2 |
| MsG0880045515.01.T01 | AT5G05790 | 46.774 | 62 | 32 | 1 | 90 | 150 | 117 | 178 | 1.15e-12 | 65.9 |
| MsG0880045515.01.T01 | AT5G05790 | 46.774 | 62 | 32 | 1 | 90 | 150 | 117 | 178 | 1.15e-12 | 65.9 |
| MsG0880045515.01.T01 | AT3G16350 | 51.724 | 58 | 27 | 1 | 93 | 149 | 126 | 183 | 2.06e-12 | 65.9 |
| MsG0880045515.01.T01 | AT3G11280 | 52.083 | 48 | 23 | 0 | 103 | 150 | 127 | 174 | 2.41e-12 | 65.1 |
| MsG0880045515.01.T01 | AT3G11280 | 52.083 | 48 | 23 | 0 | 103 | 150 | 127 | 174 | 2.41e-12 | 65.1 |
| MsG0880045515.01.T01 | AT1G49010 | 49.057 | 53 | 27 | 0 | 100 | 152 | 131 | 183 | 2.99e-12 | 65.1 |
| MsG0880045515.01.T01 | AT2G38090 | 55.319 | 47 | 21 | 0 | 103 | 149 | 141 | 187 | 3.81e-12 | 64.7 |
| MsG0880045515.01.T01 | AT5G08520 | 40.909 | 66 | 39 | 0 | 87 | 152 | 102 | 167 | 7.72e-12 | 63.9 |
| MsG0880045515.01.T01 | AT1G19000 | 50.909 | 55 | 26 | 1 | 96 | 149 | 94 | 148 | 1.79e-11 | 62.8 |
| MsG0880045515.01.T01 | AT1G19000 | 50.909 | 55 | 26 | 1 | 96 | 149 | 94 | 148 | 1.79e-11 | 62.8 |
| MsG0880045515.01.T01 | AT5G01200 | 55.319 | 47 | 21 | 0 | 103 | 149 | 146 | 192 | 2.14e-11 | 62.4 |
| MsG0880045515.01.T01 | AT5G04760 | 44.615 | 65 | 34 | 1 | 104 | 168 | 100 | 162 | 4.85e-11 | 60.8 |
| MsG0880045515.01.T01 | AT5G56840 | 41.538 | 65 | 38 | 0 | 103 | 167 | 91 | 155 | 7.97e-11 | 60.5 |
Find 73 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTAAGAACCGTTGATATT+TGG | 0.199296 | 8:+60405593 | None:intergenic |
| TCATCATCTGTTCCATATTA+TGG | 0.206416 | 8:-60404753 | MsG0880045515.01.T01:CDS |
| ATACATAGTTCTTAGCAATT+TGG | 0.264680 | 8:+60404913 | None:intergenic |
| GGTGTTGGTGGTGATGGATT+TGG | 0.296123 | 8:+60405701 | None:intergenic |
| CTAGCTTCTCCTCCATAATA+TGG | 0.305605 | 8:+60404741 | None:intergenic |
| GCCTAGCTCCATTTGAGAAT+TGG | 0.318293 | 8:+60405548 | None:intergenic |
| AGTTGATTTGGAACTTCGTT+TGG | 0.333131 | 8:-60404646 | MsG0880045515.01.T01:CDS |
| CTGATGGGGCTGATCAAGTA+TGG | 0.367591 | 8:-60404951 | MsG0880045515.01.T01:CDS |
| ATGACTCTACCTAGTGCTTC+TGG | 0.372681 | 8:-60404678 | MsG0880045515.01.T01:CDS |
| CCTAGCTCCATTTGAGAATT+GGG | 0.375616 | 8:+60405549 | None:intergenic |
| GGCTGTGATACTTGCCAGAT+TGG | 0.384550 | 8:+60405614 | None:intergenic |
| TGGATTTGGTGGTGAAGATT+AGG | 0.385439 | 8:+60405715 | None:intergenic |
| GCTTGCTCCGTTGTTGTTGT+TGG | 0.386799 | 8:+60404707 | None:intergenic |
| ACTCTGCTTCCAAGAGTAAC+AGG | 0.390450 | 8:-60404779 | MsG0880045515.01.T01:CDS |
| TAGTTTGGTGTTGGTGGTGA+TGG | 0.391425 | 8:+60405695 | None:intergenic |
| GCTGTGATACTTGCCAGATT+GGG | 0.393678 | 8:+60405615 | None:intergenic |
| TCTCAAATGGAGCTAGGCTC+AGG | 0.396903 | 8:-60405543 | MsG0880045515.01.T01:CDS |
| GGATTTGGTGGTGAAGATTA+GGG | 0.406181 | 8:+60405716 | None:intergenic |
| TGATGAGTTCCTGTTACTCT+TGG | 0.406940 | 8:+60404770 | None:intergenic |
| TTTGAGAATTGGGATGTGTT+TGG | 0.407144 | 8:+60405559 | None:intergenic |
| GATAAAGATACGGGTGTTGA+TGG | 0.416245 | 8:+60405781 | None:intergenic |
| TGGTGATGGAGGAGTTGATT+TGG | 0.416843 | 8:-60404658 | MsG0880045515.01.T01:CDS |
| GTAAGATCAATGATCTCAAT+AGG | 0.418602 | 8:+60405823 | None:intergenic |
| GTTGATTTGGAACTTCGTTT+GGG | 0.424734 | 8:-60404645 | MsG0880045515.01.T01:CDS |
| CTACCTAGTGCTTCTGGTGA+TGG | 0.425886 | 8:-60404672 | MsG0880045515.01.T01:CDS |
| GTGGTACAAACAAGGTAGTT+TGG | 0.433356 | 8:+60405680 | None:intergenic |
| GAGCTAGGCTCAGGGTTCCT+TGG | 0.446694 | 8:-60405534 | MsG0880045515.01.T01:CDS |
| TAGAAACGGGAGCAAAGTTA+AGG | 0.448465 | 8:+60405743 | None:intergenic |
| GCTACCGGTTGGCCCCAATC+TGG | 0.454203 | 8:-60405628 | MsG0880045515.01.T01:CDS |
| TCAAGTATGGAAAAGGGAAA+TGG | 0.454658 | 8:-60404938 | MsG0880045515.01.T01:CDS |
| AAGATTAGGGTTGGTAGAAA+CGG | 0.455787 | 8:+60405729 | None:intergenic |
| CTCTTGGAAGCAGAGTTGTT+GGG | 0.457547 | 8:+60404786 | None:intergenic |
| GATGTGTTTGGTTCAGTTGA+CGG | 0.458493 | 8:+60405571 | None:intergenic |
| ATTTGAGGGGACTCAAATCC+TGG | 0.458680 | 8:+60405652 | None:intergenic |
| GGCCAACCGGTAGCAATTTG+AGG | 0.458848 | 8:+60405637 | None:intergenic |
| ACTCTTGGAAGCAGAGTTGT+TGG | 0.461350 | 8:+60404785 | None:intergenic |
| GGGCTGATCAAGTATGGAAA+AGG | 0.470163 | 8:-60404945 | MsG0880045515.01.T01:CDS |
| GTTGGTGGTGATGGATTTGG+TGG | 0.475694 | 8:+60405704 | None:intergenic |
| CTTGCCAGATTGGGGCCAAC+CGG | 0.482065 | 8:+60405624 | None:intergenic |
| GACTCAAATCCTGGAGGTGG+TGG | 0.483319 | 8:+60405661 | None:intergenic |
| CCTAAAACCATGCACAAAAG+TGG | 0.488465 | 8:+60404830 | None:intergenic |
| GGAGCAAAGTTAAGGATTGT+TGG | 0.489039 | 8:+60405751 | None:intergenic |
| AGATTAGGGTTGGTAGAAAC+GGG | 0.494754 | 8:+60405730 | None:intergenic |
| CCACAACAAGTTAAAAGCTA+TGG | 0.499837 | 8:-60404879 | MsG0880045515.01.T01:CDS |
| GAGTCCCCTCAAATTGCTAC+CGG | 0.500058 | 8:-60405643 | MsG0880045515.01.T01:CDS |
| AACACATCCCAATTCTCAAA+TGG | 0.501889 | 8:-60405556 | MsG0880045515.01.T01:CDS |
| GCCAACCGGTAGCAATTTGA+GGG | 0.514459 | 8:+60405638 | None:intergenic |
| CCTAGTGCTTCTGGTGATGG+AGG | 0.523054 | 8:-60404669 | MsG0880045515.01.T01:CDS |
| AGCAACACCAACAACAACAA+CGG | 0.538127 | 8:-60404714 | MsG0880045515.01.T01:CDS |
| TTGTTTGTACCACCACCTCC+AGG | 0.546643 | 8:-60405670 | MsG0880045515.01.T01:CDS |
| ACAAGGTAGTTTGGTGTTGG+TGG | 0.546899 | 8:+60405689 | None:intergenic |
| TGGTACATTAGATAAAGATA+CGG | 0.550576 | 8:+60405771 | None:intergenic |
| CAAACAAGGTAGTTTGGTGT+TGG | 0.559413 | 8:+60405686 | None:intergenic |
| CTGTGATACTTGCCAGATTG+GGG | 0.559485 | 8:+60405616 | None:intergenic |
| CCCCTCAAATTGCTACCGGT+TGG | 0.559490 | 8:-60405639 | MsG0880045515.01.T01:CDS |
| AAACCATGCACAAAAGTGGC+TGG | 0.562701 | 8:+60404834 | None:intergenic |
| GTGTTGATGGAGGTGAGTCA+AGG | 0.567410 | 8:+60405794 | None:intergenic |
| CCCAATTCTCAAATGGAGCT+AGG | 0.570237 | 8:-60405549 | MsG0880045515.01.T01:CDS |
| AAAGATACGGGTGTTGATGG+AGG | 0.573043 | 8:+60405784 | None:intergenic |
| GGGGACTCAAATCCTGGAGG+TGG | 0.579811 | 8:+60405658 | None:intergenic |
| TTGGTGGTGAAGATTAGGGT+TGG | 0.582165 | 8:+60405720 | None:intergenic |
| GGCTGATCAAGTATGGAAAA+GGG | 0.582167 | 8:-60404944 | MsG0880045515.01.T01:CDS |
| CCTCCATCACCAGAAGCACT+AGG | 0.589074 | 8:+60404669 | None:intergenic |
| GGTACATTAGATAAAGATAC+GGG | 0.591571 | 8:+60405772 | None:intergenic |
| CTCAAATGGAGCTAGGCTCA+GGG | 0.594472 | 8:-60405542 | MsG0880045515.01.T01:CDS |
| TGTTGATGGAGGTGAGTCAA+GGG | 0.594696 | 8:+60405795 | None:intergenic |
| TCATGCTCTAATTGACTCCA+AGG | 0.607425 | 8:+60405517 | None:intergenic |
| TGGAGGTGGTGGTACAAACA+AGG | 0.619969 | 8:+60405672 | None:intergenic |
| CATGCACAAAAGTGGCTGGT+AGG | 0.630767 | 8:+60404838 | None:intergenic |
| TCATCTGTTCCATATTATGG+AGG | 0.666793 | 8:-60404750 | MsG0880045515.01.T01:CDS |
| GTATCACAGCCAAATATCAA+CGG | 0.675913 | 8:-60405602 | MsG0880045515.01.T01:CDS |
| TGAGGGGACTCAAATCCTGG+AGG | 0.739253 | 8:+60405655 | None:intergenic |
| CCAACCGGTAGCAATTTGAG+GGG | 0.766266 | 8:+60405639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGTTATCATTAAATT+TGG | + | Chr8:60405067-60405086 | None:intergenic | 10.0% |
| !! | ATAAAATTAGTCATTAAATT+CGG | + | Chr8:60405305-60405324 | None:intergenic | 10.0% |
| !! | ATATCAATAGTAAAATTTAA+CGG | + | Chr8:60405445-60405464 | None:intergenic | 10.0% |
| !!! | ATTATTTTATAATCTATGAA+AGG | + | Chr8:60405401-60405420 | None:intergenic | 10.0% |
| !!! | TTATTTTATAATCTATGAAA+GGG | + | Chr8:60405400-60405419 | None:intergenic | 10.0% |
| !! | CTAAAAGTTTAATACAAAAT+TGG | + | Chr8:60405279-60405298 | None:intergenic | 15.0% |
| !! | TATCAATAGTAAAATTTAAC+GGG | + | Chr8:60405444-60405463 | None:intergenic | 15.0% |
| !!! | TATTTTAGCTTATTTCTGAT+GGG | - | Chr8:60405492-60405511 | MsG0880045515.01.T01:intron | 20.0% |
| !!! | TTATTTTAGCTTATTTCTGA+TGG | - | Chr8:60405491-60405510 | MsG0880045515.01.T01:intron | 20.0% |
| ! | AAATTGCGATAAAAATTGAG+AGG | - | Chr8:60405039-60405058 | MsG0880045515.01.T01:intron | 25.0% |
| ! | ATAATCTATGAAAGGGTAAT+TGG | + | Chr8:60405393-60405412 | None:intergenic | 25.0% |
| ! | ATACATAGTTCTTAGCAATT+TGG | + | Chr8:60405548-60405567 | None:intergenic | 25.0% |
| ! | GTTGAATAACCACAAAAATT+TGG | - | Chr8:60405228-60405247 | MsG0880045515.01.T01:intron | 25.0% |
| ! | TGGTACATTAGATAAAGATA+CGG | + | Chr8:60404690-60404709 | None:intergenic | 25.0% |
| !! | TTTCTTTCTCCAAATTTTTG+TGG | + | Chr8:60405240-60405259 | None:intergenic | 25.0% |
| !!! | ATTTTAGCTTATTTCTGATG+GGG | - | Chr8:60405493-60405512 | MsG0880045515.01.T01:intron | 25.0% |
| AAATAACTGCGAATTTAGTG+GGG | + | Chr8:60405158-60405177 | None:intergenic | 30.0% | |
| GAAATAACTGCGAATTTAGT+GGG | + | Chr8:60405159-60405178 | None:intergenic | 30.0% | |
| GGTACATTAGATAAAGATAC+GGG | + | Chr8:60404689-60404708 | None:intergenic | 30.0% | |
| GTAAGATCAATGATCTCAAT+AGG | + | Chr8:60404638-60404657 | None:intergenic | 30.0% | |
| GTTTAAGAACCGTTGATATT+TGG | + | Chr8:60404868-60404887 | None:intergenic | 30.0% | |
| TCATCATCTGTTCCATATTA+TGG | - | Chr8:60405705-60405724 | MsG0880045515.01.T01:CDS | 30.0% | |
| TGAAATAACTGCGAATTTAG+TGG | + | Chr8:60405160-60405179 | None:intergenic | 30.0% | |
| ! | ATTGGTGTAGAAGTGATTTT+AGG | + | Chr8:60405375-60405394 | None:intergenic | 30.0% |
| AACACATCCCAATTCTCAAA+TGG | - | Chr8:60404902-60404921 | MsG0880045515.01.T01:CDS | 35.0% | |
| CCACAACAAGTTAAAAGCTA+TGG | - | Chr8:60405579-60405598 | MsG0880045515.01.T01:CDS | 35.0% | |
| GTATCACAGCCAAATATCAA+CGG | - | Chr8:60404856-60404875 | MsG0880045515.01.T01:CDS | 35.0% | |
| TCAAGTATGGAAAAGGGAAA+TGG | - | Chr8:60405520-60405539 | MsG0880045515.01.T01:CDS | 35.0% | |
| TCATCTGTTCCATATTATGG+AGG | - | Chr8:60405708-60405727 | MsG0880045515.01.T01:CDS | 35.0% | |
| TTTGAGAATTGGGATGTGTT+TGG | + | Chr8:60404902-60404921 | None:intergenic | 35.0% | |
| !! | AAGATTAGGGTTGGTAGAAA+CGG | + | Chr8:60404732-60404751 | None:intergenic | 35.0% |
| !! | AGTTGATTTGGAACTTCGTT+TGG | - | Chr8:60405812-60405831 | MsG0880045515.01.T01:CDS | 35.0% |
| !! | GTTGATTTGGAACTTCGTTT+GGG | - | Chr8:60405813-60405832 | MsG0880045515.01.T01:CDS | 35.0% |
| !!! | CCATAGCTTTTAACTTGTTG+TGG | + | Chr8:60405582-60405601 | None:intergenic | 35.0% |
| AGCAACACCAACAACAACAA+CGG | - | Chr8:60405744-60405763 | MsG0880045515.01.T01:CDS | 40.0% | |
| CCTAAAACCATGCACAAAAG+TGG | + | Chr8:60405631-60405650 | None:intergenic | 40.0% | |
| CCTAGCTCCATTTGAGAATT+GGG | + | Chr8:60404912-60404931 | None:intergenic | 40.0% | |
| CTAGCTTCTCCTCCATAATA+TGG | + | Chr8:60405720-60405739 | None:intergenic | 40.0% | |
| GGAGCAAAGTTAAGGATTGT+TGG | + | Chr8:60404710-60404729 | None:intergenic | 40.0% | |
| GGCTGATCAAGTATGGAAAA+GGG | - | Chr8:60405514-60405533 | MsG0880045515.01.T01:intron | 40.0% | |
| GTGGTACAAACAAGGTAGTT+TGG | + | Chr8:60404781-60404800 | None:intergenic | 40.0% | |
| TAGAAACGGGAGCAAAGTTA+AGG | + | Chr8:60404718-60404737 | None:intergenic | 40.0% | |
| TGATGAGTTCCTGTTACTCT+TGG | + | Chr8:60405691-60405710 | None:intergenic | 40.0% | |
| ! | GATGTGTTTGGTTCAGTTGA+CGG | + | Chr8:60404890-60404909 | None:intergenic | 40.0% |
| ! | TCATGCTCTAATTGACTCCA+AGG | + | Chr8:60404944-60404963 | None:intergenic | 40.0% |
| !! | AGATTAGGGTTGGTAGAAAC+GGG | + | Chr8:60404731-60404750 | None:intergenic | 40.0% |
| !! | CAAACAAGGTAGTTTGGTGT+TGG | + | Chr8:60404775-60404794 | None:intergenic | 40.0% |
| !! | CCACTTTTGTGCATGGTTTT+AGG | - | Chr8:60405628-60405647 | MsG0880045515.01.T01:CDS | 40.0% |
| !! | GATAAAGATACGGGTGTTGA+TGG | + | Chr8:60404680-60404699 | None:intergenic | 40.0% |
| !! | GGATTTGGTGGTGAAGATTA+GGG | + | Chr8:60404745-60404764 | None:intergenic | 40.0% |
| !! | TGGATTTGGTGGTGAAGATT+AGG | + | Chr8:60404746-60404765 | None:intergenic | 40.0% |
| AAACCATGCACAAAAGTGGC+TGG | + | Chr8:60405627-60405646 | None:intergenic | 45.0% | |
| ACTCTGCTTCCAAGAGTAAC+AGG | - | Chr8:60405679-60405698 | MsG0880045515.01.T01:CDS | 45.0% | |
| ACTCTTGGAAGCAGAGTTGT+TGG | + | Chr8:60405676-60405695 | None:intergenic | 45.0% | |
| ATGACTCTACCTAGTGCTTC+TGG | - | Chr8:60405780-60405799 | MsG0880045515.01.T01:CDS | 45.0% | |
| ATTTGAGGGGACTCAAATCC+TGG | + | Chr8:60404809-60404828 | None:intergenic | 45.0% | |
| CCCAATTCTCAAATGGAGCT+AGG | - | Chr8:60404909-60404928 | MsG0880045515.01.T01:CDS | 45.0% | |
| CTCTTGGAAGCAGAGTTGTT+GGG | + | Chr8:60405675-60405694 | None:intergenic | 45.0% | |
| CTGTGATACTTGCCAGATTG+GGG | + | Chr8:60404845-60404864 | None:intergenic | 45.0% | |
| GCCTAGCTCCATTTGAGAAT+TGG | + | Chr8:60404913-60404932 | None:intergenic | 45.0% | |
| GCTGTGATACTTGCCAGATT+GGG | + | Chr8:60404846-60404865 | None:intergenic | 45.0% | |
| GGGCTGATCAAGTATGGAAA+AGG | - | Chr8:60405513-60405532 | MsG0880045515.01.T01:intron | 45.0% | |
| ! | TGTTGATGGAGGTGAGTCAA+GGG | + | Chr8:60404666-60404685 | None:intergenic | 45.0% |
| !! | AAAGATACGGGTGTTGATGG+AGG | + | Chr8:60404677-60404696 | None:intergenic | 45.0% |
| !! | ACAAGGTAGTTTGGTGTTGG+TGG | + | Chr8:60404772-60404791 | None:intergenic | 45.0% |
| !! | TAGTTTGGTGTTGGTGGTGA+TGG | + | Chr8:60404766-60404785 | None:intergenic | 45.0% |
| !! | TGGTGATGGAGGAGTTGATT+TGG | - | Chr8:60405800-60405819 | MsG0880045515.01.T01:CDS | 45.0% |
| !! | TTGGTGGTGAAGATTAGGGT+TGG | + | Chr8:60404741-60404760 | None:intergenic | 45.0% |
| CATGCACAAAAGTGGCTGGT+AGG | + | Chr8:60405623-60405642 | None:intergenic | 50.0% | |
| CCAACCGGTAGCAATTTGAG+GGG | + | Chr8:60404822-60404841 | None:intergenic | 50.0% | |
| CTACCTAGTGCTTCTGGTGA+TGG | - | Chr8:60405786-60405805 | MsG0880045515.01.T01:CDS | 50.0% | |
| CTCAAATGGAGCTAGGCTCA+GGG | - | Chr8:60404916-60404935 | MsG0880045515.01.T01:CDS | 50.0% | |
| CTGATGGGGCTGATCAAGTA+TGG | - | Chr8:60405507-60405526 | MsG0880045515.01.T01:intron | 50.0% | |
| GAGTCCCCTCAAATTGCTAC+CGG | - | Chr8:60404815-60404834 | MsG0880045515.01.T01:CDS | 50.0% | |
| GCCAACCGGTAGCAATTTGA+GGG | + | Chr8:60404823-60404842 | None:intergenic | 50.0% | |
| GGCTGTGATACTTGCCAGAT+TGG | + | Chr8:60404847-60404866 | None:intergenic | 50.0% | |
| TCTCAAATGGAGCTAGGCTC+AGG | - | Chr8:60404915-60404934 | MsG0880045515.01.T01:CDS | 50.0% | |
| TTGTTTGTACCACCACCTCC+AGG | - | Chr8:60404788-60404807 | MsG0880045515.01.T01:CDS | 50.0% | |
| ! | GCTTGCTCCGTTGTTGTTGT+TGG | + | Chr8:60405754-60405773 | None:intergenic | 50.0% |
| ! | GTGTTGATGGAGGTGAGTCA+AGG | + | Chr8:60404667-60404686 | None:intergenic | 50.0% |
| ! | TGGAGGTGGTGGTACAAACA+AGG | + | Chr8:60404789-60404808 | None:intergenic | 50.0% |
| !! | GGTGTTGGTGGTGATGGATT+TGG | + | Chr8:60404760-60404779 | None:intergenic | 50.0% |
| !! | GTTGGTGGTGATGGATTTGG+TGG | + | Chr8:60404757-60404776 | None:intergenic | 50.0% |
| !!! | CTACCAGCCACTTTTGTGCA+TGG | - | Chr8:60405621-60405640 | MsG0880045515.01.T01:CDS | 50.0% |
| CCCCTCAAATTGCTACCGGT+TGG | - | Chr8:60404819-60404838 | MsG0880045515.01.T01:CDS | 55.0% | |
| GACTCAAATCCTGGAGGTGG+TGG | + | Chr8:60404800-60404819 | None:intergenic | 55.0% | |
| GGCCAACCGGTAGCAATTTG+AGG | + | Chr8:60404824-60404843 | None:intergenic | 55.0% | |
| TGAGGGGACTCAAATCCTGG+AGG | + | Chr8:60404806-60404825 | None:intergenic | 55.0% | |
| !! | CCTAGTGCTTCTGGTGATGG+AGG | - | Chr8:60405789-60405808 | MsG0880045515.01.T01:CDS | 55.0% |
| !! | CCTCCATCACCAGAAGCACT+AGG | + | Chr8:60405792-60405811 | None:intergenic | 55.0% |
| CTTGCCAGATTGGGGCCAAC+CGG | + | Chr8:60404837-60404856 | None:intergenic | 60.0% | |
| GAGCTAGGCTCAGGGTTCCT+TGG | - | Chr8:60404924-60404943 | MsG0880045515.01.T01:CDS | 60.0% | |
| GGGGACTCAAATCCTGGAGG+TGG | + | Chr8:60404803-60404822 | None:intergenic | 60.0% | |
| ! | GCTACCGGTTGGCCCCAATC+TGG | - | Chr8:60404830-60404849 | MsG0880045515.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 60404632 | 60405848 | 60404632 | ID=MsG0880045515.01;Name=MsG0880045515.01 |
| Chr8 | mRNA | 60404632 | 60405848 | 60404632 | ID=MsG0880045515.01.T01;Parent=MsG0880045515.01;Name=MsG0880045515.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|226 |
| Chr8 | exon | 60405517 | 60405848 | 60405517 | ID=MsG0880045515.01.T01:exon:11921;Parent=MsG0880045515.01.T01 |
| Chr8 | exon | 60404632 | 60404980 | 60404632 | ID=MsG0880045515.01.T01:exon:11920;Parent=MsG0880045515.01.T01 |
| Chr8 | CDS | 60405517 | 60405848 | 60405517 | ID=MsG0880045515.01.T01:cds;Parent=MsG0880045515.01.T01 |
| Chr8 | CDS | 60404632 | 60404980 | 60404632 | ID=MsG0880045515.01.T01:cds;Parent=MsG0880045515.01.T01 |
| Gene Sequence |
| Protein sequence |
