AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045526.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045526.01.T01 MTR_8g073250 85.312 497 2 3 1 481 1 442 0.0 840
MsG0880045526.01.T01 MTR_5g024270 70.482 498 78 3 1 481 1 446 0.0 676
MsG0880045526.01.T01 MTR_5g024270 72.340 376 51 2 1 375 1 324 0.0 522
MsG0880045526.01.T01 MTR_1g061690 41.579 570 187 8 2 477 8 525 6.02e-147 431
MsG0880045526.01.T01 MTR_4g056390 41.270 567 179 9 12 477 13 526 1.25e-140 415
MsG0880045526.01.T01 MTR_2g084555 45.896 268 80 2 6 260 8 223 7.13e-71 234
MsG0880045526.01.T01 MTR_2g084555 40.580 276 125 4 235 477 253 522 3.26e-64 217
MsG0880045526.01.T01 MTR_3g076540 28.155 412 218 13 62 450 64 420 9.60e-30 120
MsG0880045526.01.T01 MTR_3g076540 27.735 393 208 11 79 450 1 338 1.40e-29 119
MsG0880045526.01.T01 MTR_3g109390 28.814 354 179 11 115 449 86 385 5.21e-29 118
MsG0880045526.01.T01 MTR_3g109390 28.814 354 179 11 115 449 108 407 8.91e-29 118
MsG0880045526.01.T01 MTR_3g076540 28.652 356 178 11 116 450 21 321 1.68e-28 115
MsG0880045526.01.T01 MTR_4g104620 28.198 383 199 12 91 452 5 332 1.36e-27 113
MsG0880045526.01.T01 MTR_4g104620 27.981 411 224 13 62 452 68 426 1.50e-27 114
MsG0880045526.01.T01 MTR_3g109390 29.096 354 178 12 115 449 77 376 1.94e-27 113
MsG0880045526.01.T01 MTR_4g104620 28.771 358 179 12 116 452 21 323 2.13e-27 112
MsG0880045526.01.T01 MTR_3g109390 30.028 353 174 13 115 449 99 396 2.71e-27 113
MsG0880045526.01.T01 MTR_3g109390 29.096 354 178 12 115 449 99 398 3.41e-27 113
MsG0880045526.01.T01 MTR_3g076540 27.619 420 218 14 62 450 64 428 3.88e-27 113
MsG0880045526.01.T01 MTR_3g086530 30.242 248 124 6 116 363 2 200 6.18e-24 102
MsG0880045526.01.T01 MTR_3g086530 30.242 248 124 6 116 363 119 317 6.93e-24 103
MsG0880045526.01.T01 MTR_3g109390 32.129 249 117 8 115 363 99 295 8.50e-24 102
MsG0880045526.01.T01 MTR_3g086530 30.242 248 124 6 116 363 119 317 1.31e-23 103
MsG0880045526.01.T01 MTR_3g086530 29.630 243 122 6 116 358 119 312 3.37e-22 97.4
MsG0880045526.01.T01 MTR_0349s0030 32.727 165 87 6 304 449 125 284 6.44e-17 81.6
MsG0880045526.01.T01 MTR_6g074905 32.727 165 87 6 304 449 1005 1164 1.92e-16 83.2
MsG0880045526.01.T01 MTR_3g086530 30.159 189 88 4 175 363 1 145 2.16e-16 79.3
MsG0880045526.01.T01 MTR_5g082700 31.646 158 92 5 306 449 550 705 4.69e-16 81.3
MsG0880045526.01.T01 MTR_8g070930 29.891 184 103 6 55 232 114 277 3.69e-14 75.9
MsG0880045526.01.T01 MTR_6g074750 45.000 60 31 1 304 361 54 113 1.26e-11 62.0
MsG0880045526.01.T01 MTR_5g026960 33.537 164 98 6 306 463 139 297 2.56e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045526.01.T01 AT4G35500 62.173 497 109 5 1 478 1 437 0.0 598
MsG0880045526.01.T01 AT2G17530 62.298 496 109 5 1 478 1 436 0.0 583
MsG0880045526.01.T01 AT2G17530 62.298 496 109 5 1 478 1 436 0.0 583
MsG0880045526.01.T01 AT4G35500 61.368 497 114 7 1 478 1 438 0.0 582
MsG0880045526.01.T01 AT2G17530 66.578 377 72 3 1 375 1 325 7.14e-163 464
MsG0880045526.01.T01 AT3G53030 42.235 528 179 8 12 467 16 489 2.05e-139 411
MsG0880045526.01.T01 AT5G22840 41.777 529 183 7 4 464 11 482 6.67e-136 403
MsG0880045526.01.T01 AT3G44850 39.929 566 192 8 12 481 19 532 6.14e-134 397
MsG0880045526.01.T01 AT4G32660 27.887 355 182 9 115 449 88 388 5.76e-29 118
MsG0880045526.01.T01 AT4G32660 28.169 355 181 9 115 449 96 396 6.22e-29 118
MsG0880045526.01.T01 AT4G24740 27.778 414 221 12 62 452 30 388 3.44e-28 115
MsG0880045526.01.T01 AT4G24740 27.778 414 221 12 62 452 68 426 8.96e-28 115
MsG0880045526.01.T01 AT4G24740 28.307 378 195 12 96 452 1 323 1.24e-27 113
MsG0880045526.01.T01 AT4G24740 28.307 378 195 12 96 452 1 323 1.24e-27 113
MsG0880045526.01.T01 AT4G24740 28.307 378 195 12 96 452 1 323 1.24e-27 113
MsG0880045526.01.T01 AT4G32660 30.924 249 120 6 115 363 96 292 8.60e-27 111
MsG0880045526.01.T01 AT3G53570 27.273 352 189 9 116 449 141 443 1.16e-25 109
MsG0880045526.01.T01 AT3G53570 27.273 352 189 9 116 449 141 443 1.16e-25 109
MsG0880045526.01.T01 AT3G53570 27.273 352 189 9 116 449 141 443 1.16e-25 109
MsG0880045526.01.T01 AT3G53570 27.273 352 189 9 116 449 127 429 1.17e-25 109
MsG0880045526.01.T01 AT3G53570 27.273 352 189 9 116 449 127 429 1.17e-25 109
MsG0880045526.01.T01 AT4G24740 29.934 304 160 7 62 363 68 320 2.20e-25 107
MsG0880045526.01.T01 AT4G24740 31.343 268 133 7 96 363 1 217 2.47e-25 104
MsG0880045526.01.T01 AT4G32660 27.596 337 168 11 134 449 3 284 1.83e-24 103
MsG0880045526.01.T01 AT4G24740 29.431 299 158 7 62 358 68 315 2.83e-23 100
MsG0880045526.01.T01 AT1G73450 34.568 162 88 5 304 449 984 1143 3.16e-19 91.7
MsG0880045526.01.T01 AT1G73460 34.568 162 88 5 304 449 1001 1160 3.32e-19 91.7
MsG0880045526.01.T01 AT1G73460 34.568 162 88 5 304 449 1001 1160 3.32e-19 91.7
MsG0880045526.01.T01 AT2G40120 31.928 166 97 4 304 454 404 568 1.42e-17 85.9
MsG0880045526.01.T01 AT3G17750 31.515 165 89 3 304 449 970 1129 2.25e-16 82.8
MsG0880045526.01.T01 AT5G35980 31.469 143 92 3 96 237 128 265 1.35e-15 80.1
MsG0880045526.01.T01 AT5G35980 51.724 58 28 0 306 363 267 324 7.09e-12 68.6
MsG0880045526.01.T01 AT5G35980 31.469 143 92 3 96 237 93 230 1.40e-15 80.1
MsG0880045526.01.T01 AT5G35980 51.724 58 28 0 306 363 232 289 7.72e-12 68.6
MsG0880045526.01.T01 AT5G35980 31.469 143 92 3 96 237 128 265 1.61e-15 80.1
MsG0880045526.01.T01 AT5G35980 51.724 58 28 0 306 363 267 324 7.97e-12 68.2
MsG0880045526.01.T01 AT4G24740 28.405 257 114 9 217 452 13 220 9.38e-15 73.9
MsG0880045526.01.T01 AT4G24740 28.405 257 114 9 217 452 13 220 9.38e-15 73.9

Find 139 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATATTTCTATCAGAATT+TGG 0.182704 8:-60558768 None:intergenic
AATGTAAATCTTATTGAATT+TGG 0.189427 8:-60560473 None:intergenic
ATGTCTTGTTCTTCTTCATC+TGG 0.217080 8:+60557155 MsG0880045526.01.T01:CDS
ATGAAATTGTGAGATTATTA+AGG 0.228457 8:-60557040 None:intergenic
GGATTCGGAGGCTAAAATTT+TGG 0.237408 8:+60560124 MsG0880045526.01.T01:CDS
TTCTGGACAAAGAGCTTCTA+TGG 0.246761 8:+60558728 MsG0880045526.01.T01:CDS
TTCTGCAGTTGGTCGCTTCT+CGG 0.258297 8:-60560241 None:intergenic
AGGGCGGTAGCTAAAATTTC+TGG 0.265940 8:+60558711 MsG0880045526.01.T01:CDS
CCATGAGCCAAGGGTGTTGC+AGG 0.266108 8:-60560269 None:intergenic
AGATGCAAAGTGGTTGATTT+TGG 0.275568 8:+60558804 MsG0880045526.01.T01:CDS
GTACATAGCTCAGAGGAAAT+TGG 0.318879 8:+60557265 MsG0880045526.01.T01:CDS
CAGCATGGTATCCACCTTTC+CGG 0.321046 8:-60557211 None:intergenic
AAAACTTGAAAATGTTCTTC+TGG 0.321760 8:+60558560 MsG0880045526.01.T01:CDS
CCCTCAGGCCTCTCTAAAAT+CGG 0.323007 8:-60558630 None:intergenic
TCGAAATGTGAATGTGGATT+TGG 0.330779 8:+60557680 MsG0880045526.01.T01:CDS
GGATTTGGATTTCCTGCATT+TGG 0.350321 8:+60557695 MsG0880045526.01.T01:CDS
GCTAAAACCTTGTCCGACTT+TGG 0.352838 8:-60558988 None:intergenic
GTCTGAATTTCTTCCGCAAA+TGG 0.355796 8:-60558849 None:intergenic
AAATTTCTGTCAAATATCTA+TGG 0.364734 8:-60560549 None:intergenic
GATGTTTGAAATGGTGAAAT+TGG 0.364772 8:+60557646 MsG0880045526.01.T01:CDS
CTAAAACCTTGTCCGACTTT+GGG 0.366642 8:-60558987 None:intergenic
GGGGAGACTCCCGATCTAAC+AGG 0.374226 8:-60558609 None:intergenic
AAGTGCAGCGCAGTTTGTTC+AGG 0.376553 8:+60558260 MsG0880045526.01.T01:CDS
TCAATCAATAGTTTGTTAAG+AGG 0.383534 8:-60560147 None:intergenic
AGCTCAGAGGAAATTGGGTT+GGG 0.387320 8:+60557271 MsG0880045526.01.T01:CDS
ATGTTGAAGAGGGGACTTAG+AGG 0.388043 8:-60560413 None:intergenic
TGCATGGTACTCGAATTTCT+TGG 0.404519 8:+60558402 MsG0880045526.01.T01:CDS
GATTGTTGTTGTTCTATTTG+TGG 0.405910 8:-60557009 None:intergenic
ATTGCTTTCGAGCTTGCCAC+TGG 0.409835 8:+60558948 MsG0880045526.01.T01:CDS
TGTCTTGTTCTTCTTCATCT+GGG 0.422803 8:+60557156 MsG0880045526.01.T01:CDS
GCTTAAAGTGGTCGATCAAT+TGG 0.423698 8:-60558353 None:intergenic
ATGCATTGGTGCTGGCCGTT+AGG 0.428045 8:-60558384 None:intergenic
GATTCATTTCTCATTTCATC+AGG 0.430586 8:-60560306 None:intergenic
TACATAGCTCAGAGGAAATT+GGG 0.433819 8:+60557266 MsG0880045526.01.T01:CDS
TCTGCAGTTGGTCGCTTCTC+GGG 0.434856 8:-60560240 None:intergenic
CTCTTAGCTTTGAGACCTCA+TGG 0.438650 8:-60560619 None:intergenic
ACACCCTTGGCTCATGGAAA+AGG 0.460564 8:+60560275 MsG0880045526.01.T01:CDS
CCTCAGGCCTCTCTAAAATC+GGG 0.463410 8:-60558629 None:intergenic
GATATATGTGATGTTTGAAA+TGG 0.463870 8:+60557637 MsG0880045526.01.T01:CDS
AAGGTGGATACCATGCTGTC+CGG 0.465806 8:+60557216 MsG0880045526.01.T01:CDS
GTCTTCCGATGAATAAAGTC+AGG 0.469765 8:+60558466 MsG0880045526.01.T01:CDS
AATTCTGATAGAAATATTGA+TGG 0.472298 8:+60558771 MsG0880045526.01.T01:CDS
AAAAGTTGAAAAGGAGAGCA+AGG 0.476403 8:+60558688 MsG0880045526.01.T01:CDS
AGAGCTTCTATGGGAGGAAT+GGG 0.477776 8:+60558738 MsG0880045526.01.T01:CDS
TTAAGATATTCTCCAAATGC+AGG 0.479622 8:-60557707 None:intergenic
TGGTTTGGATTACTTGCATA+GGG 0.485784 8:+60558512 MsG0880045526.01.T01:CDS
CCTGCAACACCCTTGGCTCA+TGG 0.486242 8:+60560269 MsG0880045526.01.T01:CDS
AACACAAGATGCAAAACTAT+AGG 0.487504 8:-60557734 None:intergenic
AAGAGCTTCTATGGGAGGAA+TGG 0.488237 8:+60558737 MsG0880045526.01.T01:CDS
ACGGGGATCTCAAAAGGATT+CGG 0.490967 8:+60560109 MsG0880045526.01.T01:CDS
CCAGCCTGCAGTATAACTTC+AGG 0.494640 8:-60558888 None:intergenic
ATTCCTTCTCCGTCGATATG+TGG 0.494693 8:+60558913 MsG0880045526.01.T01:CDS
ATGTTACAGGTTGCTACTGC+AGG 0.497187 8:+60560057 MsG0880045526.01.T01:intron
ACAGACACGGGGATCTCAAA+AGG 0.497743 8:+60560103 MsG0880045526.01.T01:CDS
GGCGAAAGACCCTGTTAGAT+CGG 0.498073 8:+60558599 MsG0880045526.01.T01:CDS
AACAGTGCCTGCAACACCCT+TGG 0.502041 8:+60560262 MsG0880045526.01.T01:CDS
TCTGGTTTCTACTATCGATC+CGG 0.502093 8:+60558578 MsG0880045526.01.T01:CDS
AATAAGCAACCTTAAAATCA+AGG 0.503806 8:+60560353 MsG0880045526.01.T01:CDS
TGCAGGCACTGTTCTGCAGT+TGG 0.504517 8:-60560252 None:intergenic
AGGCCTGAGGGAAACATAAA+CGG 0.506847 8:+60558642 MsG0880045526.01.T01:CDS
GCGCCGTTTATGTTTCCCTC+AGG 0.507071 8:-60558645 None:intergenic
CGAGTACCATGCATTGGTGC+TGG 0.511219 8:-60558392 None:intergenic
GAAATGGTGAAATTGGTGAA+TGG 0.513031 8:+60557653 MsG0880045526.01.T01:CDS
GCGAAAGACCCTGTTAGATC+GGG 0.514836 8:+60558600 MsG0880045526.01.T01:CDS
GTGATCAGTTCGCCGGTGGA+AGG 0.518910 8:+60557243 MsG0880045526.01.T01:CDS
AGCTCCTGAAGTTATACTGC+AGG 0.520770 8:+60558884 MsG0880045526.01.T01:CDS
GTTCTTTCATCCATTGCTGA+TGG 0.521395 8:+60558303 MsG0880045526.01.T01:CDS
AAATCAAGGTGGGGAAGTGA+AGG 0.521806 8:+60560367 MsG0880045526.01.T01:CDS
AAAGTCAATAATGTTGAAGA+GGG 0.523570 8:-60560423 None:intergenic
AGGTGGATACCATGCTGTCC+GGG 0.530748 8:+60557217 MsG0880045526.01.T01:CDS
TTGCTTTCGAGCTTGCCACT+GGG 0.531169 8:+60558949 MsG0880045526.01.T01:CDS
ATGAAGGCTTTGATTCCTAC+CGG 0.531226 8:+60557192 MsG0880045526.01.T01:CDS
AGCAACCTTAAAATCAAGGT+GGG 0.536200 8:+60560357 MsG0880045526.01.T01:CDS
AGGATTTCTTCGACAGACAC+GGG 0.536846 8:+60560091 MsG0880045526.01.T01:CDS
TTGGGCTGATAAGCCATTTG+CGG 0.537617 8:+60558836 MsG0880045526.01.T01:CDS
TAGCTCAGAGGAAATTGGGT+TGG 0.539063 8:+60557270 MsG0880045526.01.T01:CDS
TTGGTTTGGATTACTTGCAT+AGG 0.539558 8:+60558511 MsG0880045526.01.T01:CDS
TGTTGAAGAGGGGACTTAGA+GGG 0.540241 8:-60560412 None:intergenic
AATCAAGGTGGGGAAGTGAA+GGG 0.549534 8:+60560368 MsG0880045526.01.T01:exon
ATGTTATTTACTCCCAAAGT+CGG 0.550928 8:+60558975 MsG0880045526.01.T01:CDS
GATTACTTGCATAGGGAACA+TGG 0.550939 8:+60558519 MsG0880045526.01.T01:CDS
TGGAGCATTGTTGAAGAGAG+AGG 0.551987 8:+60556965 MsG0880045526.01.T01:five_prime_UTR
GTCGGTGATCAGTTCGCCGG+TGG 0.559099 8:+60557239 MsG0880045526.01.T01:CDS
AAAAGTCAATAATGTTGAAG+AGG 0.559375 8:-60560424 None:intergenic
ATCAAGGTGGGGAAGTGAAG+GGG 0.562315 8:+60560369 MsG0880045526.01.T01:exon
TGAAGGGGCGCCATCAGCAA+TGG 0.565495 8:-60558313 None:intergenic
GTTGAAAAGGAGAGCAAGGA+GGG 0.566829 8:+60558692 MsG0880045526.01.T01:CDS
TCTGGACAAAGAGCTTCTAT+GGG 0.567262 8:+60558729 MsG0880045526.01.T01:CDS
CGGCGAACTGATCACCGACC+CGG 0.567799 8:-60557235 None:intergenic
AAGGATTTCTTCGACAGACA+CGG 0.569862 8:+60560090 MsG0880045526.01.T01:CDS
GGCTTTGATTCCTACCGGAA+AGG 0.573918 8:+60557197 MsG0880045526.01.T01:CDS
ATCTCCCTGACTTTATTCAT+CGG 0.573932 8:-60558471 None:intergenic
GGATTGAGAACATACATCGT+TGG 0.574635 8:-60557330 None:intergenic
GCTTTGAGACCTCATGGAGG+AGG 0.574786 8:-60560613 None:intergenic
GTGTCTGTCGAAGAAATCCT+TGG 0.579045 8:-60560088 None:intergenic
GAAATTCGAGTACCATGCAT+TGG 0.579276 8:-60558398 None:intergenic
ATTCTGATAGAAATATTGAT+GGG 0.582335 8:+60558772 MsG0880045526.01.T01:CDS
GATCTAACAGGGTCTTTCGC+CGG 0.591268 8:-60558597 None:intergenic
TTTACTCCCAAAGTCGGACA+AGG 0.591377 8:+60558981 MsG0880045526.01.T01:CDS
TCATCGGAAGACCTTTGTAA+CGG 0.595143 8:-60558455 None:intergenic
CGGGTCGGTGATCAGTTCGC+CGG 0.595542 8:+60557236 MsG0880045526.01.T01:CDS
TAGGACCTGTGTGCTTAAAG+TGG 0.596811 8:-60558365 None:intergenic
GGGTCTGAAGATGATGATGA+AGG 0.603847 8:+60557176 MsG0880045526.01.T01:CDS
GGATACCATGCTGTCCGGGT+CGG 0.605762 8:+60557221 MsG0880045526.01.T01:CDS
TTTAAGCACACAGGTCCTAA+CGG 0.605824 8:+60558369 MsG0880045526.01.T01:CDS
CTGAGCTATGTACCTTCCAC+CGG 0.605904 8:-60557255 None:intergenic
AGACCACATATCGACGGAGA+AGG 0.607795 8:-60558916 None:intergenic
AGTATCAAAAGCAAGCCAAA+CGG 0.608489 8:-60557306 None:intergenic
ATGGTATCCACCTTTCCGGT+AGG 0.608525 8:-60557207 None:intergenic
AATGAGAAATGAATCTAGTG+TGG 0.608814 8:+60560314 MsG0880045526.01.T01:CDS
GCTCAGAGGAAATTGGGTTG+GGG 0.614301 8:+60557272 MsG0880045526.01.T01:CDS
TTTGATTCCTACCGGAAAGG+TGG 0.616024 8:+60557200 MsG0880045526.01.T01:CDS
CCTGAAGTTATACTGCAGGC+TGG 0.616462 8:+60558888 MsG0880045526.01.T01:CDS
GTCAGATACAACCGTTACAA+AGG 0.617545 8:+60558444 MsG0880045526.01.T01:CDS
TGCTTTCGAGCTTGCCACTG+GGG 0.622478 8:+60558950 MsG0880045526.01.T01:CDS
GATCACCGACCCGGACAGCA+TGG 0.622696 8:-60557226 None:intergenic
GGGAGACTCCCGATCTAACA+GGG 0.627241 8:-60558608 None:intergenic
GGTCATTCGAAATGTGAATG+TGG 0.631809 8:+60557674 MsG0880045526.01.T01:CDS
TAACGGCCAGCACCAATGCA+TGG 0.636403 8:+60558386 MsG0880045526.01.T01:CDS
CTCAGGCCTCTCTAAAATCG+GGG 0.638151 8:-60558628 None:intergenic
TCGGGTGCAAAATCAAGAAG+AGG 0.638735 8:-60560222 None:intergenic
GTGTATATGACATTCATCCA+AGG 0.639970 8:+60560574 MsG0880045526.01.T01:three_prime_UTR
ATCGACCACTTTAAGCACAC+AGG 0.642901 8:+60558360 MsG0880045526.01.T01:CDS
GCAACCTTAAAATCAAGGTG+GGG 0.643577 8:+60560358 MsG0880045526.01.T01:CDS
AGCAAAAGACCACATATCGA+CGG 0.644032 8:-60558922 None:intergenic
AAGCAACCTTAAAATCAAGG+TGG 0.649106 8:+60560356 MsG0880045526.01.T01:CDS
GGACAAAGAGCTTCTATGGG+AGG 0.655170 8:+60558732 MsG0880045526.01.T01:CDS
GGGATCTCAAAAGGATTCGG+AGG 0.658136 8:+60560112 MsG0880045526.01.T01:CDS
GGATTTCTTCGACAGACACG+GGG 0.676658 8:+60560092 MsG0880045526.01.T01:CDS
TCTTCCGATGAATAAAGTCA+GGG 0.678520 8:+60558467 MsG0880045526.01.T01:CDS
GAAAAGGAGAGCAAGGAGGG+CGG 0.678748 8:+60558695 MsG0880045526.01.T01:CDS
GATTGATGTTAGATGCAAAG+TGG 0.684911 8:+60558794 MsG0880045526.01.T01:CDS
AAGTCAATAATGTTGAAGAG+GGG 0.686144 8:-60560422 None:intergenic
AGTTGAAAAGGAGAGCAAGG+AGG 0.686372 8:+60558691 MsG0880045526.01.T01:CDS
TACTGCAGGAGTGAAATCCA+AGG 0.690749 8:+60560071 MsG0880045526.01.T01:CDS
AGTAAATAACATATCCCCAG+TGG 0.717830 8:-60558964 None:intergenic
GTGGAAGGTACATAGCTCAG+AGG 0.720598 8:+60557258 MsG0880045526.01.T01:CDS
TGAGGGAAACATAAACGGCG+CGG 0.758453 8:+60558647 MsG0880045526.01.T01:CDS
TTAGCTTTGAGACCTCATGG+AGG 0.773888 8:-60560616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGATTTACATTTTTTAT+TGG + Chr8:60560482-60560501 MsG0880045526.01.T01:three_prime_UTR 10.0%
!! AATGTAAATCTTATTGAATT+TGG - Chr8:60560476-60560495 None:intergenic 15.0%
!!! TTTTTGTTTATAATAGTGAT+TGG + Chr8:60557552-60557571 MsG0880045526.01.T01:intron 15.0%
!! AAATTTCTGTCAAATATCTA+TGG - Chr8:60560552-60560571 None:intergenic 20.0%
!! AATTCTGATAGAAATATTGA+TGG + Chr8:60558771-60558790 MsG0880045526.01.T01:CDS 20.0%
!! AGATTGCAATAATACAAAAA+GGG - Chr8:60557381-60557400 None:intergenic 20.0%
!! ATGAAATTGTGAGATTATTA+AGG - Chr8:60557043-60557062 None:intergenic 20.0%
!! ATTCTGATAGAAATATTGAT+GGG + Chr8:60558772-60558791 MsG0880045526.01.T01:CDS 20.0%
!! CAAAACAAATCTTTATCTTT+AGG - Chr8:60557354-60557373 None:intergenic 20.0%
!! CTATTATATCATGTATAGTT+AGG - Chr8:60559361-60559380 None:intergenic 20.0%
!! GAATAAAAACTGAAACTTTA+AGG - Chr8:60557123-60557142 None:intergenic 20.0%
!! GATATTTGACAAGAAATAAA+AGG - Chr8:60558186-60558205 None:intergenic 20.0%
!! TATTCAATGAACCTAAAAAA+TGG - Chr8:60557457-60557476 None:intergenic 20.0%
!! TTATTGAGAAAAAGTTGAAA+AGG + Chr8:60558679-60558698 MsG0880045526.01.T01:CDS 20.0%
!!! AACAAATTTTGAATTTGAAG+GGG - Chr8:60558331-60558350 None:intergenic 20.0%
!!! ACAACAAATTTTGAATTTGA+AGG - Chr8:60558333-60558352 None:intergenic 20.0%
!!! ATTATAGGTTGATAATGATT+GGG + Chr8:60557960-60557979 MsG0880045526.01.T01:intron 20.0%
!!! CAACAAATTTTGAATTTGAA+GGG - Chr8:60558332-60558351 None:intergenic 20.0%
!!! CATTTTCAAATCGATAAATA+CGG - Chr8:60557792-60557811 None:intergenic 20.0%
!!! TAAATAGGTGTTAATTTTGT+TGG + Chr8:60558052-60558071 MsG0880045526.01.T01:intron 20.0%
!!! TAATAGTTGTTACTTTATTG+AGG + Chr8:60559495-60559514 MsG0880045526.01.T01:intron 20.0%
!!! TATAGTTTTGAATCTTTGAT+TGG + Chr8:60559672-60559691 MsG0880045526.01.T01:intron 20.0%
!!! TATTATAGGTTGATAATGAT+TGG + Chr8:60557959-60557978 MsG0880045526.01.T01:intron 20.0%
!!! TATTGAATAAACAGTCATTT+TGG + Chr8:60559059-60559078 MsG0880045526.01.T01:intron 20.0%
!!! TCAATATTTCTATCAGAATT+TGG - Chr8:60558771-60558790 None:intergenic 20.0%
!!! TTGATTGTGGTTTTATTTTT+TGG + Chr8:60560445-60560464 MsG0880045526.01.T01:three_prime_UTR 20.0%
! AAAACTTGAAAATGTTCTTC+TGG + Chr8:60558560-60558579 MsG0880045526.01.T01:CDS 25.0%
! AAAAGTCAATAATGTTGAAG+AGG - Chr8:60560427-60560446 None:intergenic 25.0%
! AAAGTCAATAATGTTGAAGA+GGG - Chr8:60560426-60560445 None:intergenic 25.0%
! AATAAGCAACCTTAAAATCA+AGG + Chr8:60560353-60560372 MsG0880045526.01.T01:CDS 25.0%
! ATAGCTAAATGTTAAGACTT+TGG + Chr8:60558136-60558155 MsG0880045526.01.T01:intron 25.0%
! ATCTTCTGTTAGTAATTTGA+TGG - Chr8:60559171-60559190 None:intergenic 25.0%
! ATTTAATACTTGCATGTTAC+AGG + Chr8:60560044-60560063 MsG0880045526.01.T01:intron 25.0%
! CAGATTGCAATAATACAAAA+AGG - Chr8:60557382-60557401 None:intergenic 25.0%
! CTTCAATGAATTCCATTATT+GGG - Chr8:60559563-60559582 None:intergenic 25.0%
! GATATATGTGATGTTTGAAA+TGG + Chr8:60557637-60557656 MsG0880045526.01.T01:CDS 25.0%
! GCAAAAGAAGAAACATATAA+TGG - Chr8:60559722-60559741 None:intergenic 25.0%
! GTTAATGAGAAATCAATTCA+AGG + Chr8:60559532-60559551 MsG0880045526.01.T01:intron 25.0%
! TAAGTTCATATTTGACAGTT+CGG - Chr8:60559416-60559435 None:intergenic 25.0%
! TAGCTAAATGTTAAGACTTT+GGG + Chr8:60558137-60558156 MsG0880045526.01.T01:intron 25.0%
! TCTTCAATGAATTCCATTAT+TGG - Chr8:60559564-60559583 None:intergenic 25.0%
! TTGTTTATAATAGTGATTGG+AGG + Chr8:60557555-60557574 MsG0880045526.01.T01:intron 25.0%
!!! ACATTATTGACTTTTGATTG+TGG + Chr8:60560432-60560451 MsG0880045526.01.T01:three_prime_UTR 25.0%
!!! ATTTGTCAATGCATTTTGAT+TGG + Chr8:60558492-60558511 MsG0880045526.01.T01:CDS 25.0%
!!! GAAGAACATTTTCAAGTTTT+AGG - Chr8:60558560-60558579 None:intergenic 25.0%
!!! GAGGATGTTTTTTGTAATTT+TGG - Chr8:60559128-60559147 None:intergenic 25.0%
!!! TCAATCAATAGTTTGTTAAG+AGG - Chr8:60560150-60560169 None:intergenic 25.0%
!!! TCTGAGTTTCGATTTTAATT+TGG + Chr8:60558112-60558131 MsG0880045526.01.T01:intron 25.0%
!!! TGTGGTTTTATTTTTTGGTT+TGG + Chr8:60560450-60560469 MsG0880045526.01.T01:three_prime_UTR 25.0%
AAATTTGCCACAGTTAGTTA+CGG - Chr8:60560028-60560047 None:intergenic 30.0%
AACACAAGATGCAAAACTAT+AGG - Chr8:60557737-60557756 None:intergenic 30.0%
AAGTCAATAATGTTGAAGAG+GGG - Chr8:60560425-60560444 None:intergenic 30.0%
AATGAGAAATCAATTCAAGG+AGG + Chr8:60559535-60559554 MsG0880045526.01.T01:intron 30.0%
AATGAGAAATGAATCTAGTG+TGG + Chr8:60560314-60560333 MsG0880045526.01.T01:CDS 30.0%
AGCTAAATGTTAAGACTTTG+GGG + Chr8:60558138-60558157 MsG0880045526.01.T01:intron 30.0%
ATCAACCTATAATAGCTAAG+AGG - Chr8:60557953-60557972 None:intergenic 30.0%
GAACTGTCAAATATGAACTT+AGG + Chr8:60559415-60559434 MsG0880045526.01.T01:intron 30.0%
GAAGAAACATATAATGGTCT+TGG - Chr8:60559716-60559735 None:intergenic 30.0%
GATTCATTTCTCATTTCATC+AGG - Chr8:60560309-60560328 None:intergenic 30.0%
GCAATTGTGCATCTATAAAT+AGG + Chr8:60558037-60558056 MsG0880045526.01.T01:intron 30.0%
TATGTCAGCTTGACATTAAA+TGG - Chr8:60559602-60559621 None:intergenic 30.0%
TCGTATTAAATAGTGTAACG+CGG - Chr8:60559911-60559930 None:intergenic 30.0%
TTAAGATATTCTCCAAATGC+AGG - Chr8:60557710-60557729 None:intergenic 30.0%
! AACCAATCTTTGCATTTTGT+CGG + Chr8:60559792-60559811 MsG0880045526.01.T01:intron 30.0%
! ATCCTTTTAATGGTAACACT+TGG + Chr8:60558000-60558019 MsG0880045526.01.T01:intron 30.0%
! ATGTTATTTACTCCCAAAGT+CGG + Chr8:60558975-60558994 MsG0880045526.01.T01:CDS 30.0%
! GATGTTTGAAATGGTGAAAT+TGG + Chr8:60557646-60557665 MsG0880045526.01.T01:CDS 30.0%
! GATTGTTGTTGTTCTATTTG+TGG - Chr8:60557012-60557031 None:intergenic 30.0%
! GTTTTGTATGCATTAATTGC+TGG + Chr8:60557418-60557437 MsG0880045526.01.T01:intron 30.0%
! TAATTTTGAATGGATCGGAT+TGG + Chr8:60557600-60557619 MsG0880045526.01.T01:CDS 30.0%
! TTTTGGTCGTTAAATCTGTT+AGG - Chr8:60559248-60559267 None:intergenic 30.0%
!! ACAGTTGAAAAAGCATTGAA+AGG + Chr8:60556910-60556929 MsG0880045526.01.T01:five_prime_UTR 30.0%
!!! AGGATGTATTTTTTGTGCAA+GGG + Chr8:60557575-60557594 MsG0880045526.01.T01:intron 30.0%
!!! GTCGCAAAAAACCATTTTTT+AGG + Chr8:60557443-60557462 MsG0880045526.01.T01:intron 30.0%
!!! TCAATGCATTTTGATTGGTT+TGG + Chr8:60558497-60558516 MsG0880045526.01.T01:CDS 30.0%
!!! TTGTAATTTTGGCTAATTCG+AGG - Chr8:60559117-60559136 None:intergenic 30.0%
AAAAGTTGAAAAGGAGAGCA+AGG + Chr8:60558688-60558707 MsG0880045526.01.T01:CDS 35.0%
AAAATCGAAACTCAGAACCA+TGG - Chr8:60558108-60558127 None:intergenic 35.0%
AACCGACAAAATGCAAAGAT+TGG - Chr8:60559797-60559816 None:intergenic 35.0%
AAGCAACCTTAAAATCAAGG+TGG + Chr8:60560356-60560375 MsG0880045526.01.T01:CDS 35.0%
AGCAACCTTAAAATCAAGGT+GGG + Chr8:60560357-60560376 MsG0880045526.01.T01:CDS 35.0%
AGTAAATAACATATCCCCAG+TGG - Chr8:60558967-60558986 None:intergenic 35.0%
AGTATCAAAAGCAAGCCAAA+CGG - Chr8:60557309-60557328 None:intergenic 35.0%
AGTTTATAGTGAGCTGCATA+TGG + Chr8:60558077-60558096 MsG0880045526.01.T01:intron 35.0%
ATAACAATGACATGCAGAGA+CGG - Chr8:60559884-60559903 None:intergenic 35.0%
ATAGATTTGTCTCTTTGCAG+AGG + Chr8:60557898-60557917 MsG0880045526.01.T01:intron 35.0%
ATCTCCCTGACTTTATTCAT+CGG - Chr8:60558474-60558493 None:intergenic 35.0%
ATTGAAGATACCTGTGTTAC+CGG + Chr8:60559576-60559595 MsG0880045526.01.T01:intron 35.0%
CACCAAGTGTTACCATTAAA+AGG - Chr8:60558005-60558024 None:intergenic 35.0%
GAAAACAAAAAGACTTGCCT+TGG - Chr8:60560594-60560613 None:intergenic 35.0%
GAAATGGTGAAATTGGTGAA+TGG + Chr8:60557653-60557672 MsG0880045526.01.T01:CDS 35.0%
GAGAGAAAGAGAGAAAAAAG+TGG + Chr8:60556945-60556964 MsG0880045526.01.T01:five_prime_UTR 35.0%
GATTGATGTTAGATGCAAAG+TGG + Chr8:60558794-60558813 MsG0880045526.01.T01:CDS 35.0%
GGATGGTCAGATATGTATAA+TGG + Chr8:60557832-60557851 MsG0880045526.01.T01:intron 35.0%
GGGTCATATGTTCATATGAA+AGG + Chr8:60559287-60559306 MsG0880045526.01.T01:intron 35.0%
GTGTATATGACATTCATCCA+AGG + Chr8:60560574-60560593 MsG0880045526.01.T01:three_prime_UTR 35.0%
TAACGACCAAAATGAGTGTT+CGG + Chr8:60559256-60559275 MsG0880045526.01.T01:intron 35.0%
TACATAGCTCAGAGGAAATT+GGG + Chr8:60557266-60557285 MsG0880045526.01.T01:CDS 35.0%
TCATATGAAAGGAAAGCTTC+TGG + Chr8:60559298-60559317 MsG0880045526.01.T01:intron 35.0%
TCGAAATGTGAATGTGGATT+TGG + Chr8:60557680-60557699 MsG0880045526.01.T01:CDS 35.0%
TCTTCCGATGAATAAAGTCA+GGG + Chr8:60558467-60558486 MsG0880045526.01.T01:CDS 35.0%
TGAATCTAGTGTGGAAAAAG+TGG + Chr8:60560323-60560342 MsG0880045526.01.T01:CDS 35.0%
TGGAAAATTTAGCATATGCG+TGG + Chr8:60557855-60557874 MsG0880045526.01.T01:intron 35.0%
TGGTCAGATATGTATAATGG+TGG + Chr8:60557835-60557854 MsG0880045526.01.T01:intron 35.0%
TTGTATGCATTAATTGCTGG+TGG + Chr8:60557421-60557440 MsG0880045526.01.T01:intron 35.0%
TTTAGCATATGCGTGGAATT+TGG + Chr8:60557862-60557881 MsG0880045526.01.T01:intron 35.0%
! AGTTTTGCATCTTGTGTTGT+TGG + Chr8:60557739-60557758 MsG0880045526.01.T01:intron 35.0%
! ATGTCTTGTTCTTCTTCATC+TGG + Chr8:60557155-60557174 MsG0880045526.01.T01:CDS 35.0%
! CAATATCCGAACACTCATTT+TGG - Chr8:60559265-60559284 None:intergenic 35.0%
! GGGTGTAATTTTGAATGGAT+CGG + Chr8:60557595-60557614 MsG0880045526.01.T01:intron 35.0%
! GTGCGTTATGATCCTTTTAA+TGG + Chr8:60557990-60558009 MsG0880045526.01.T01:intron 35.0%
! TACGAAGTGTTCTCAAATAG+TGG + Chr8:60559926-60559945 MsG0880045526.01.T01:intron 35.0%
! TGGTTTGGATTACTTGCATA+GGG + Chr8:60558512-60558531 MsG0880045526.01.T01:CDS 35.0%
! TGTCTTGTTCTTCTTCATCT+GGG + Chr8:60557156-60557175 MsG0880045526.01.T01:CDS 35.0%
! TTTAATGGTAACACTTGGTG+CGG + Chr8:60558005-60558024 MsG0880045526.01.T01:intron 35.0%
! TTTTGGTCCTTGAATGTGTT+AGG + Chr8:60559076-60559095 MsG0880045526.01.T01:intron 35.0%
!! AGATGCAAAGTGGTTGATTT+TGG + Chr8:60558804-60558823 MsG0880045526.01.T01:CDS 35.0%
!! TGATTTTGGAAATGCGTGTT+GGG + Chr8:60558818-60558837 MsG0880045526.01.T01:CDS 35.0%
!! TGCAAGGGTGTAATTTTGAA+TGG + Chr8:60557590-60557609 MsG0880045526.01.T01:intron 35.0%
!! TTGATTTTGGAAATGCGTGT+TGG + Chr8:60558817-60558836 MsG0880045526.01.T01:CDS 35.0%
!! TTGGTTTGGATTACTTGCAT+AGG + Chr8:60558511-60558530 MsG0880045526.01.T01:CDS 35.0%
!!! GAGGATGTATTTTTTGTGCA+AGG + Chr8:60557574-60557593 MsG0880045526.01.T01:intron 35.0%
AAGGATTTCTTCGACAGACA+CGG + Chr8:60560090-60560109 MsG0880045526.01.T01:CDS 40.0%
AATGAGTGTTCGGATATTGC+AGG + Chr8:60559266-60559285 MsG0880045526.01.T01:intron 40.0%
AGCAAAAGACCACATATCGA+CGG - Chr8:60558925-60558944 None:intergenic 40.0%
AGCTGCATATGGAAATACCA+TGG + Chr8:60558088-60558107 MsG0880045526.01.T01:intron 40.0%
AGTGTGGAAAAAGTGGATGT+TGG + Chr8:60560330-60560349 MsG0880045526.01.T01:CDS 40.0%
AGTTACGGTGTAGTCAATCA+TGG - Chr8:60560013-60560032 None:intergenic 40.0%
ATGAGTGTTCGGATATTGCA+GGG + Chr8:60559267-60559286 MsG0880045526.01.T01:intron 40.0%
CTAAAACCTTGTCCGACTTT+GGG - Chr8:60558990-60559009 None:intergenic 40.0%
GAAATTCGAGTACCATGCAT+TGG - Chr8:60558401-60558420 None:intergenic 40.0%
GATTACTTGCATAGGGAACA+TGG + Chr8:60558519-60558538 MsG0880045526.01.T01:CDS 40.0%
GCAACCTTAAAATCAAGGTG+GGG + Chr8:60560358-60560377 MsG0880045526.01.T01:CDS 40.0%
GCTTAAAGTGGTCGATCAAT+TGG - Chr8:60558356-60558375 None:intergenic 40.0%
GGAAAACAAAAATTCCGCAC+AGG - Chr8:60558165-60558184 None:intergenic 40.0%
GGATTGAGAACATACATCGT+TGG - Chr8:60557333-60557352 None:intergenic 40.0%
GGATTTGGATTTCCTGCATT+TGG + Chr8:60557695-60557714 MsG0880045526.01.T01:CDS 40.0%
GGTCATTCGAAATGTGAATG+TGG + Chr8:60557674-60557693 MsG0880045526.01.T01:CDS 40.0%
GTACATAGCTCAGAGGAAAT+TGG + Chr8:60557265-60557284 MsG0880045526.01.T01:CDS 40.0%
GTCAGATACAACCGTTACAA+AGG + Chr8:60558444-60558463 MsG0880045526.01.T01:CDS 40.0%
GTCTGAATTTCTTCCGCAAA+TGG - Chr8:60558852-60558871 None:intergenic 40.0%
GTCTTCCGATGAATAAAGTC+AGG + Chr8:60558466-60558485 MsG0880045526.01.T01:CDS 40.0%
GTGAGTTGTCTGATCTTGAT+TGG + Chr8:60557811-60557830 MsG0880045526.01.T01:intron 40.0%
GTTAGCACCTAACACATTCA+AGG - Chr8:60559086-60559105 None:intergenic 40.0%
GTTCTTTCATCCATTGCTGA+TGG + Chr8:60558303-60558322 MsG0880045526.01.T01:CDS 40.0%
GTTGTCTGATCTTGATTGGA+TGG + Chr8:60557815-60557834 MsG0880045526.01.T01:intron 40.0%
TCAGCTTGACATTAAATGGC+CGG - Chr8:60559598-60559617 None:intergenic 40.0%
TCATCGGAAGACCTTTGTAA+CGG - Chr8:60558458-60558477 None:intergenic 40.0%
TCTGGACAAAGAGCTTCTAT+GGG + Chr8:60558729-60558748 MsG0880045526.01.T01:CDS 40.0%
TGCATGGTACTCGAATTTCT+TGG + Chr8:60558402-60558421 MsG0880045526.01.T01:CDS 40.0%
TTCTGGACAAAGAGCTTCTA+TGG + Chr8:60558728-60558747 MsG0880045526.01.T01:CDS 40.0%
TTGCGCCTCTTAGCTATTAT+AGG + Chr8:60557945-60557964 MsG0880045526.01.T01:intron 40.0%
TTTAAGCACACAGGTCCTAA+CGG + Chr8:60558369-60558388 MsG0880045526.01.T01:CDS 40.0%
! ACTTCCCCACCTTGATTTTA+AGG - Chr8:60560365-60560384 None:intergenic 40.0%
! ATGAAGGCTTTGATTCCTAC+CGG + Chr8:60557192-60557211 MsG0880045526.01.T01:CDS 40.0%
! GGATTCGGAGGCTAAAATTT+TGG + Chr8:60560124-60560143 MsG0880045526.01.T01:CDS 40.0%
! TCTGGTTTCTACTATCGATC+CGG + Chr8:60558578-60558597 MsG0880045526.01.T01:CDS 40.0%
!!! TTTTGTTTTCCTCCTCCATG+AGG + Chr8:60560604-60560623 MsG0880045526.01.T01:three_prime_UTR 40.0%
AAATCAAGGTGGGGAAGTGA+AGG + Chr8:60560367-60560386 MsG0880045526.01.T01:CDS 45.0%
AAGAGCTTCTATGGGAGGAA+TGG + Chr8:60558737-60558756 MsG0880045526.01.T01:CDS 45.0%
AATCAAGGTGGGGAAGTGAA+GGG + Chr8:60560368-60560387 MsG0880045526.01.T01:exon 45.0%
ACGGGGATCTCAAAAGGATT+CGG + Chr8:60560109-60560128 MsG0880045526.01.T01:CDS 45.0%
AGAGCTTCTATGGGAGGAAT+GGG + Chr8:60558738-60558757 MsG0880045526.01.T01:CDS 45.0%
AGCTCAGAGGAAATTGGGTT+GGG + Chr8:60557271-60557290 MsG0880045526.01.T01:CDS 45.0%
AGCTCCTGAAGTTATACTGC+AGG + Chr8:60558884-60558903 MsG0880045526.01.T01:CDS 45.0%
AGGATTTCTTCGACAGACAC+GGG + Chr8:60560091-60560110 MsG0880045526.01.T01:CDS 45.0%
AGGCCTGAGGGAAACATAAA+CGG + Chr8:60558642-60558661 MsG0880045526.01.T01:CDS 45.0%
AGGGCGGTAGCTAAAATTTC+TGG + Chr8:60558711-60558730 MsG0880045526.01.T01:CDS 45.0%
AGTTGAAAAGGAGAGCAAGG+AGG + Chr8:60558691-60558710 MsG0880045526.01.T01:CDS 45.0%
ATCGACCACTTTAAGCACAC+AGG + Chr8:60558360-60558379 MsG0880045526.01.T01:CDS 45.0%
ATGTTACAGGTTGCTACTGC+AGG + Chr8:60560057-60560076 MsG0880045526.01.T01:intron 45.0%
ATGTTGAAGAGGGGACTTAG+AGG - Chr8:60560416-60560435 None:intergenic 45.0%
ATTCCTTCTCCGTCGATATG+TGG + Chr8:60558913-60558932 MsG0880045526.01.T01:CDS 45.0%
CATTAAATGGCCGGTAACAC+AGG - Chr8:60559589-60559608 None:intergenic 45.0%
CCAAACTAACGAGACATTGG+AGG - Chr8:60559147-60559166 None:intergenic 45.0%
CCTCCAATGTCTCGTTAGTT+TGG + Chr8:60559144-60559163 MsG0880045526.01.T01:intron 45.0%
CTTTGTGAGTCTCTACACCT+CGG + Chr8:60559754-60559773 MsG0880045526.01.T01:intron 45.0%
GACTACACCGTAACTAACTG+TGG + Chr8:60560018-60560037 MsG0880045526.01.T01:intron 45.0%
GCTAAAACCTTGTCCGACTT+TGG - Chr8:60558991-60559010 None:intergenic 45.0%
GGACCAAACTAACGAGACAT+TGG - Chr8:60559150-60559169 None:intergenic 45.0%
GTCTCTTTGCAGAGGACTTA+AGG + Chr8:60557906-60557925 MsG0880045526.01.T01:intron 45.0%
GTGTCTGTCGAAGAAATCCT+TGG - Chr8:60560091-60560110 None:intergenic 45.0%
GTTGAAAAGGAGAGCAAGGA+GGG + Chr8:60558692-60558711 MsG0880045526.01.T01:CDS 45.0%
TACTGCAGGAGTGAAATCCA+AGG + Chr8:60560071-60560090 MsG0880045526.01.T01:CDS 45.0%
TAGCTCAGAGGAAATTGGGT+TGG + Chr8:60557270-60557289 MsG0880045526.01.T01:CDS 45.0%
TAGGACCTGTGTGCTTAAAG+TGG - Chr8:60558368-60558387 None:intergenic 45.0%
TCCAAGGAGTTCCATCATCA+GGG - Chr8:60559834-60559853 None:intergenic 45.0%
TCGGGTGCAAAATCAAGAAG+AGG - Chr8:60560225-60560244 None:intergenic 45.0%
TGTTGAAGAGGGGACTTAGA+GGG - Chr8:60560415-60560434 None:intergenic 45.0%
TTATCCTGACATGCTATCCG+AGG - Chr8:60559774-60559793 None:intergenic 45.0%
TTCCAAGGAGTTCCATCATC+AGG - Chr8:60559835-60559854 None:intergenic 45.0%
TTGGGCTGATAAGCCATTTG+CGG + Chr8:60558836-60558855 MsG0880045526.01.T01:CDS 45.0%
TTTACTCCCAAAGTCGGACA+AGG + Chr8:60558981-60559000 MsG0880045526.01.T01:CDS 45.0%
TTTGATTCCTACCGGAAAGG+TGG + Chr8:60557200-60557219 MsG0880045526.01.T01:CDS 45.0%
! AGTCCTTTTCCATGAGCCAA+GGG - Chr8:60560281-60560300 None:intergenic 45.0%
! GGGTCTGAAGATGATGATGA+AGG + Chr8:60557176-60557195 MsG0880045526.01.T01:CDS 45.0%
!! AGGAAAGCTTCTGGAACAGT+TGG + Chr8:60559307-60559326 MsG0880045526.01.T01:intron 45.0%
!! CTCTTAGCTTTGAGACCTCA+TGG - Chr8:60560622-60560641 None:intergenic 45.0%
!! CTTTGCATTTTGTCGGTTGC+AGG + Chr8:60559799-60559818 MsG0880045526.01.T01:intron 45.0%
!! TGGAGCATTGTTGAAGAGAG+AGG + Chr8:60556965-60556984 MsG0880045526.01.T01:five_prime_UTR 45.0%
!! TTAGCTTTGAGACCTCATGG+AGG - Chr8:60560619-60560638 None:intergenic 45.0%
!! TTCAAGGAGGCACCCAATAA+TGG + Chr8:60559548-60559567 MsG0880045526.01.T01:intron 45.0%
AACTCCTTGGAAAGATGCCC+CGG + Chr8:60559843-60559862 MsG0880045526.01.T01:intron 50.0%
AAGGTGGATACCATGCTGTC+CGG + Chr8:60557216-60557235 MsG0880045526.01.T01:CDS 50.0%
ACAATGACATGCAGAGACGG+TGG - Chr8:60559881-60559900 None:intergenic 50.0%
ACACCCTTGGCTCATGGAAA+AGG + Chr8:60560275-60560294 MsG0880045526.01.T01:CDS 50.0%
ACAGACACGGGGATCTCAAA+AGG + Chr8:60560103-60560122 MsG0880045526.01.T01:CDS 50.0%
AGACCACATATCGACGGAGA+AGG - Chr8:60558919-60558938 None:intergenic 50.0%
ATCAAGGTGGGGAAGTGAAG+GGG + Chr8:60560369-60560388 MsG0880045526.01.T01:exon 50.0%
ATGGTATCCACCTTTCCGGT+AGG - Chr8:60557210-60557229 None:intergenic 50.0%
ATTGCTTTCGAGCTTGCCAC+TGG + Chr8:60558948-60558967 MsG0880045526.01.T01:CDS 50.0%
CAATGACATGCAGAGACGGT+GGG - Chr8:60559880-60559899 None:intergenic 50.0%
CAGCATGGTATCCACCTTTC+CGG - Chr8:60557214-60557233 None:intergenic 50.0%
CCAGCCTGCAGTATAACTTC+AGG - Chr8:60558891-60558910 None:intergenic 50.0%
CCTGAAGTTATACTGCAGGC+TGG + Chr8:60558888-60558907 MsG0880045526.01.T01:CDS 50.0%
CTGAGCTATGTACCTTCCAC+CGG - Chr8:60557258-60557277 None:intergenic 50.0%
GATCTAACAGGGTCTTTCGC+CGG - Chr8:60558600-60558619 None:intergenic 50.0%
GCGAAAGACCCTGTTAGATC+GGG + Chr8:60558600-60558619 MsG0880045526.01.T01:CDS 50.0%
GGACAAAGAGCTTCTATGGG+AGG + Chr8:60558732-60558751 MsG0880045526.01.T01:CDS 50.0%
GGATTTCTTCGACAGACACG+GGG + Chr8:60560092-60560111 MsG0880045526.01.T01:CDS 50.0%
GGCGAAAGACCCTGTTAGAT+CGG + Chr8:60558599-60558618 MsG0880045526.01.T01:CDS 50.0%
GGGATCTCAAAAGGATTCGG+AGG + Chr8:60560112-60560131 MsG0880045526.01.T01:CDS 50.0%
TACACCTCGGATAGCATGTC+AGG + Chr8:60559767-60559786 MsG0880045526.01.T01:intron 50.0%
TGAGGGAAACATAAACGGCG+CGG + Chr8:60558647-60558666 MsG0880045526.01.T01:CDS 50.0%
TTCTGCAGTTGGTCGCTTCT+CGG - Chr8:60560244-60560263 None:intergenic 50.0%
TTGCTTTCGAGCTTGCCACT+GGG + Chr8:60558949-60558968 MsG0880045526.01.T01:CDS 50.0%
TTTGCCACGCTGCAAAGCTA+TGG - Chr8:60559963-60559982 None:intergenic 50.0%
! AAGTGCAGCGCAGTTTGTTC+AGG + Chr8:60558260-60558279 MsG0880045526.01.T01:CDS 50.0%
! CAAACTGCGCTGCACTTTTC+TGG - Chr8:60558257-60558276 None:intergenic 50.0%
! GAGTCCTTTTCCATGAGCCA+AGG - Chr8:60560282-60560301 None:intergenic 50.0%
! GCTCAGAGGAAATTGGGTTG+GGG + Chr8:60557272-60557291 MsG0880045526.01.T01:CDS 50.0%
! GGCTTTGATTCCTACCGGAA+AGG + Chr8:60557197-60557216 MsG0880045526.01.T01:CDS 50.0%
! GGGGTCAGTTTTCAACCGTT+TGG + Chr8:60557291-60557310 MsG0880045526.01.T01:CDS 50.0%
! GTGGAAGGTACATAGCTCAG+AGG + Chr8:60557258-60557277 MsG0880045526.01.T01:CDS 50.0%
!! ACAAGGTTTTAGCGAGGACG+AGG + Chr8:60558998-60559017 MsG0880045526.01.T01:CDS 50.0%
!! AGTCGGACAAGGTTTTAGCG+AGG + Chr8:60558992-60559011 MsG0880045526.01.T01:CDS 50.0%
!! CCCTCAGGCCTCTCTAAAAT+CGG - Chr8:60558633-60558652 None:intergenic 50.0%
!! CCGATTTTAGAGAGGCCTGA+GGG + Chr8:60558630-60558649 MsG0880045526.01.T01:CDS 50.0%
!! CCTCAGGCCTCTCTAAAATC+GGG - Chr8:60558632-60558651 None:intergenic 50.0%
!! CTCAGGCCTCTCTAAAATCG+GGG - Chr8:60558631-60558650 None:intergenic 50.0%
!! GAGTCTCCCCGATTTTAGAG+AGG + Chr8:60558622-60558641 MsG0880045526.01.T01:CDS 50.0%
!! TAAGACTTTGGGGTCCTGTG+CGG + Chr8:60558148-60558167 MsG0880045526.01.T01:intron 50.0%
AACAGTGCCTGCAACACCCT+TGG + Chr8:60560262-60560281 MsG0880045526.01.T01:CDS 55.0%
ACGGTGGGAACACTACCTTC+CGG - Chr8:60559865-60559884 None:intergenic 55.0%
AGGTGGATACCATGCTGTCC+GGG + Chr8:60557217-60557236 MsG0880045526.01.T01:CDS 55.0%
GAAAAGGAGAGCAAGGAGGG+CGG + Chr8:60558695-60558714 MsG0880045526.01.T01:CDS 55.0%
GCGCCGTTTATGTTTCCCTC+AGG - Chr8:60558648-60558667 None:intergenic 55.0%
GGAGTTCCATCATCAGGGCA+AGG - Chr8:60559829-60559848 None:intergenic 55.0%
GGATCACCTTGCCCTGATGA+TGG + Chr8:60559820-60559839 MsG0880045526.01.T01:intron 55.0%
GGGAGACTCCCGATCTAACA+GGG - Chr8:60558611-60558630 None:intergenic 55.0%
TAACGGCCAGCACCAATGCA+TGG + Chr8:60558386-60558405 MsG0880045526.01.T01:CDS 55.0%
TCTGCAGTTGGTCGCTTCTC+GGG - Chr8:60560243-60560262 None:intergenic 55.0%
TGCTTTCGAGCTTGCCACTG+GGG + Chr8:60558950-60558969 MsG0880045526.01.T01:CDS 55.0%
! AGCACCATAGCTTTGCAGCG+TGG + Chr8:60559956-60559975 MsG0880045526.01.T01:intron 55.0%
! CGAGTACCATGCATTGGTGC+TGG - Chr8:60558395-60558414 None:intergenic 55.0%
! TGCAGGCACTGTTCTGCAGT+TGG - Chr8:60560255-60560274 None:intergenic 55.0%
!! ATGCATTGGTGCTGGCCGTT+AGG - Chr8:60558387-60558406 None:intergenic 55.0%
!! CCCGATTTTAGAGAGGCCTG+AGG + Chr8:60558629-60558648 MsG0880045526.01.T01:CDS 55.0%
!! GCCCTGATGATGGAACTCCT+TGG + Chr8:60559830-60559849 MsG0880045526.01.T01:intron 55.0%
!! GCTTTGAGACCTCATGGAGG+AGG - Chr8:60560616-60560635 None:intergenic 55.0%
CCTGCAACACCCTTGGCTCA+TGG + Chr8:60560269-60560288 MsG0880045526.01.T01:CDS 60.0%
CCTTGGAAAGATGCCCCGGA+AGG + Chr8:60559847-60559866 MsG0880045526.01.T01:intron 60.0%
CGGTGGGAACACTACCTTCC+GGG - Chr8:60559864-60559883 None:intergenic 60.0%
GGATACCATGCTGTCCGGGT+CGG + Chr8:60557221-60557240 MsG0880045526.01.T01:CDS 60.0%
GGGGAGACTCCCGATCTAAC+AGG - Chr8:60558612-60558631 None:intergenic 60.0%
GGTGGGAACACTACCTTCCG+GGG - Chr8:60559863-60559882 None:intergenic 60.0%
GTGATCAGTTCGCCGGTGGA+AGG + Chr8:60557243-60557262 MsG0880045526.01.T01:CDS 60.0%
! CCTTCCGGGGCATCTTTCCA+AGG - Chr8:60559850-60559869 None:intergenic 60.0%
!! CCATGAGCCAAGGGTGTTGC+AGG - Chr8:60560272-60560291 None:intergenic 60.0%
!! TGAAGGGGCGCCATCAGCAA+TGG - Chr8:60558316-60558335 None:intergenic 60.0%
CGGCGAACTGATCACCGACC+CGG - Chr8:60557238-60557257 None:intergenic 65.0%
CGGGTCGGTGATCAGTTCGC+CGG + Chr8:60557236-60557255 MsG0880045526.01.T01:CDS 65.0%
GATCACCGACCCGGACAGCA+TGG - Chr8:60557229-60557248 None:intergenic 65.0%
GTCGGTGATCAGTTCGCCGG+TGG + Chr8:60557239-60557258 MsG0880045526.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 60556906 60560650 60556906 ID=MsG0880045526.01;Name=MsG0880045526.01
Chr8 mRNA 60556906 60560650 60556906 ID=MsG0880045526.01.T01;Parent=MsG0880045526.01;Name=MsG0880045526.01.T01;_AED=0.25;_eAED=0.31;_QI=249|0|0.75|1|1|1|4|264|481
Chr8 exon 60556906 60557337 60556906 ID=MsG0880045526.01.T01:exon:14924;Parent=MsG0880045526.01.T01
Chr8 exon 60557596 60557751 60557596 ID=MsG0880045526.01.T01:exon:14925;Parent=MsG0880045526.01.T01
Chr8 exon 60558234 60559019 60558234 ID=MsG0880045526.01.T01:exon:14926;Parent=MsG0880045526.01.T01
Chr8 exon 60560066 60560650 60560066 ID=MsG0880045526.01.T01:exon:14927;Parent=MsG0880045526.01.T01
Chr8 five_prime_UTR 60556906 60557154 60556906 ID=MsG0880045526.01.T01:five_prime_utr;Parent=MsG0880045526.01.T01
Chr8 CDS 60557155 60557337 60557155 ID=MsG0880045526.01.T01:cds;Parent=MsG0880045526.01.T01
Chr8 CDS 60557596 60557751 60557596 ID=MsG0880045526.01.T01:cds;Parent=MsG0880045526.01.T01
Chr8 CDS 60558234 60559019 60558234 ID=MsG0880045526.01.T01:cds;Parent=MsG0880045526.01.T01
Chr8 CDS 60560066 60560386 60560066 ID=MsG0880045526.01.T01:cds;Parent=MsG0880045526.01.T01
Chr8 three_prime_UTR 60560387 60560650 60560387 ID=MsG0880045526.01.T01:three_prime_utr;Parent=MsG0880045526.01.T01
Gene Sequence

>MsG0880045526.01.T01

ATGTCTTGTTCTTCTTCATCTGGGTCTGAAGATGATGATGAAGGCTTTGATTCCTACCGGAAAGGTGGATACCATGCTGTCCGGGTCGGTGATCAGTTCGCCGGTGGAAGGTACATAGCTCAGAGGAAATTGGGTTGGGGTCAGTTTTCAACCGTTTGGCTTGCTTTTGATACTACCAACGATGGTGTAATTTTGAATGGATCGGATTGGTATGATTTGAATTTGATATATGTGATGTTTGAAATGGTGAAATTGGTGAATGGTCATTCGAAATGTGAATGTGGATTTGGATTTCCTGCATTTGGAGAATATCTTAAAGTTCCTATAGTTTTGCATCTTACATATGTTGCTCTGAAGATCCAGAAAAGTGCAGCGCAGTTTGTTCAGGCTGCTCTTCACGAGATAGATGTTCTTTCATCCATTGCTGATGGCGCCCCTTCAAATTCAAAATTTGTTGTCCAATTGATCGACCACTTTAAGCACACAGGTCCTAACGGCCAGCACCAATGCATGGTACTCGAATTTCTTGGAGATAGCTTGCTACGTCTAGTCAGATACAACCGTTACAAAGGTCTTCCGATGAATAAAGTCAGGGAGATTTGTCAATGCATTTTGATTGGTTTGGATTACTTGCATAGGGAACATGGTATTATACACACAGACCTAAAACTTGAAAATGTTCTTCTGGTTTCTACTATCGATCCGGCGAAAGACCCTGTTAGATCGGGAGTCTCCCCGATTTTAGAGAGGCCTGAGGGAAACATAAACGGCGCGGTTACTAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCAAGGAGGGCGGTAGCTAAAATTTCTGGACAAAGAGCTTCTATGGGAGGAATGGGAGAAGCTCCAAATTCTGATAGAAATATTGATGGGATTGATGTTAGATGCAAAGTGGTTGATTTTGGAAATGCGTGTTGGGCTGATAAGCCATTTGCGGAAGAAATTCAGACACGACAGTATAGAGCTCCTGAAGTTATACTGCAGGCTGGTTATTCCTTCTCCGTCGATATGTGGTCTTTTGCTTGTATTGCTTTCGAGCTTGCCACTGGGGATATGTTATTTACTCCCAAAGTCGGACAAGGTTTTAGCGAGGACGAGGTTGCTACTGCAGGAGTGAAATCCAAGGATTTCTTCGACAGACACGGGGATCTCAAAAGGATTCGGAGGCTAAAATTTTGGCCTCTTAACAAACTATTGATTGAAAGATACAAATTATCAGAGAGTGATGCTCATGAATTTTCAGAGTTTCTTTTACCTCTTCTTGATTTTGCACCCGAGAAGCGACCAACTGCAGAACAGTGCCTGCAACACCCTTGGCTCATGGAAAAGGACTCTGTTCCTGATGAAATGAGAAATGAATCTAGTGTGGAAAAAGTGGATGTTGGAATAAGCAACCTTAAAATCAAGGTGGGGAAGTGA
Protein sequence

>MsG0880045526.01.T01

MSCSSSSGSEDDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAFDTTNDGVILNGSDWYDLNLIYVMFEMVKLVNGHSKCECGFGFPAFGEYLKVPIVLHLTYVALKIQKSAAQFVQAALHEIDVLSSIADGAPSNSKFVVQLIDHFKHTGPNGQHQCMVLEFLGDSLLRLVRYNRYKGLPMNKVREICQCILIGLDYLHREHGIIHTDLKLENVLLVSTIDPAKDPVRSGVSPILERPEGNINGAVTSLIEKKLKRRARRAVAKISGQRASMGGMGEAPNSDRNIDGIDVRCKVVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEVATAGVKSKDFFDRHGDLKRIRRLKFWPLNKLLIERYKLSESDAHEFSEFLLPLLDFAPEKRPTAEQCLQHPWLMEKDSVPDEMRNESSVEKVDVGISNLKIKVGK*