AlfalfaGEDB | MsG0880045606.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045606.01

KEGG: -
GO: GO:0003700 GO:0006355
PFAM: PF00170

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045606.01.T01	XP_024629057.1	91.892	148	12	0	1	148	29	176	2.23E-91	273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045606.01.T01	Q84JK2	41.718	163	64	7	12	148	128	285	1.64E-18	82.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045606.01.T01	G7LB63	90.728	151	11	1	1	148	28	178	2.28e-90	269

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TFs/TRs:

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Gene ID	Type	Classification
MsG0880045606.01.T01	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045606.01.T01	MTR_8g075130	90.728	151	11	1	1	148	28	178	5.78e-94	269
MsG0880045606.01.T01	MTR_5g022780	36.872	179	65	4	15	145	68	246	1.20e-20	84.7
MsG0880045606.01.T01	MTR_7g015990	68.000	50	13	1	78	124	120	169	1.67e-13	65.1
MsG0880045606.01.T01	MTR_3g010660	46.250	80	42	1	70	148	243	322	2.28e-12	63.2
MsG0880045606.01.T01	MTR_7g088090	55.556	72	31	1	78	148	249	320	2.92e-12	63.2
MsG0880045606.01.T01	MTR_3g101780	46.914	81	32	3	78	148	352	431	4.41e-11	60.1
MsG0880045606.01.T01	MTR_4g085910	51.515	66	28	1	78	143	301	362	8.48e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045606.01.T01	AT4G35900	41.718	163	64	7	12	148	128	285	1.67e-19	82.4
MsG0880045606.01.T01	AT2G17770	30.769	195	88	4	1	148	1	195	1.49e-14	67.8
MsG0880045606.01.T01	AT3G56850	52.564	78	36	1	72	148	220	297	2.19e-14	68.9
MsG0880045606.01.T01	AT4G34000	50.000	68	33	1	66	133	361	427	6.66e-12	62.4
MsG0880045606.01.T01	AT1G45249	63.043	46	17	0	78	123	337	382	1.34e-11	61.6
MsG0880045606.01.T01	AT1G45249	63.043	46	17	0	78	123	352	397	1.60e-11	61.2
MsG0880045606.01.T01	AT1G45249	63.043	46	17	0	78	123	352	397	1.60e-11	61.2
MsG0880045606.01.T01	AT2G41070	57.407	54	23	0	72	125	185	238	2.54e-11	60.1
MsG0880045606.01.T01	AT2G41070	57.407	54	23	0	72	125	185	238	2.54e-11	60.1
MsG0880045606.01.T01	AT2G41070	57.407	54	23	0	72	125	185	238	2.54e-11	60.1

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Find 27 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCATGGAAGATGTT+TGG	0.369539	8:+61688965	MsG0880045606.01.T01:intron
AAGAGAAGATGGTGTCATTA+AGG	0.250811	8:-61689046	None:intergenic
AAGAGACAGTGATACTCATG+TGG	0.677597	8:-61689017	None:intergenic
AAGAGGGTCGAAATGAAACT+CGG	0.604368	8:-61689097	None:intergenic
AATCAGCAACAAAAGAGGAA+GGG	0.625713	8:+61690135	MsG0880045606.01.T01:CDS
ACAGTGATACTCATGTGGTT+TGG	0.530301	8:-61689012	None:intergenic
ACGATCAAGAGCAAGAAAAC+AGG	0.426638	8:+61689248	MsG0880045606.01.T01:CDS
AGAAGATGGTGTCATTAAGG+AGG	0.464221	8:-61689043	None:intergenic
AGAGGGTCGAAATGAAACTC+GGG	0.653904	8:-61689096	None:intergenic
ATAAATAGTAGTTCTTAAAA+TGG	0.291074	8:-61690183	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACCATGGAAGATGTT+TGG	+	Chr8:61688965-61688984	MsG0880045606.01.T01:intron	30.0%
AAGGTGATAGTTAACACAAT+TGG	-	Chr8:61689896-61689915	None:intergenic	30.0%
CATAAACTATACACTCAACA+TGG	-	Chr8:61689318-61689337	None:intergenic	30.0%
TATTAAGCAACTCAAAAGAG+AGG	+	Chr8:61689187-61689206	MsG0880045606.01.T01:CDS	30.0%
TGGATACGTTCATATAAAAG+TGG	+	Chr8:61689687-61689706	MsG0880045606.01.T01:intron	30.0%
TTGTTAGTCCATATGTACTT+TGG	+	Chr8:61689915-61689934	MsG0880045606.01.T01:intron	30.0%
AATCAGCAACAAAAGAGGAA+GGG	+	Chr8:61690135-61690154	MsG0880045606.01.T01:CDS	35.0%
ATTACTAGTAACAGGGAAAG+AGG	-	Chr8:61689475-61689494	None:intergenic	35.0%
GAAGAAAAAAGTCAAGAGCT+TGG	+	Chr8:61689403-61689422	MsG0880045606.01.T01:CDS	35.0%
GTGATAGTTAACACAATTGG+TGG	-	Chr8:61689893-61689912	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	61688629	61690191	61688629	ID=MsG0880045606.01;Name=MsG0880045606.01
Chr8	mRNA	61688629	61690191	61688629	ID=MsG0880045606.01.T01;Parent=MsG0880045606.01;Name=MsG0880045606.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|0\|0\|4\|0\|148
Chr8	exon	61688629	61688630	61688629	ID=MsG0880045606.01.T01:exon:23576;Parent=MsG0880045606.01.T01
Chr8	exon	61688975	61689272	61688975	ID=MsG0880045606.01.T01:exon:23577;Parent=MsG0880045606.01.T01
Chr8	exon	61689389	61689469	61689389	ID=MsG0880045606.01.T01:exon:23578;Parent=MsG0880045606.01.T01
Chr8	exon	61690126	61690191	61690126	ID=MsG0880045606.01.T01:exon:23579;Parent=MsG0880045606.01.T01
Chr8	CDS	61688629	61688630	61688629	ID=MsG0880045606.01.T01:cds;Parent=MsG0880045606.01.T01
Chr8	CDS	61688975	61689272	61688975	ID=MsG0880045606.01.T01:cds;Parent=MsG0880045606.01.T01
Chr8	CDS	61689389	61689469	61689389	ID=MsG0880045606.01.T01:cds;Parent=MsG0880045606.01.T01
Chr8	CDS	61690126	61690191	61690126	ID=MsG0880045606.01.T01:cds;Parent=MsG0880045606.01.T01

Gene Sequence

>MsG0880045606.01.T01

ATGGAAGATGTTTGGAAAGACATCAACCTCCCTTCCTTACCAAACCACATGAGTATCACTGTCTCTTCTCCCTCCTTAATGACACCATCTTCTCTTCACTCCACCATCAACCTTAACTCTCTACCCGAGTTTCATTTCGACCCTCTTGCACACAATGACTTGCAATTAGAGCAAAATCACCACCACACTACTACTGTCTCAAAGGTTGAAGCATTATTAAGCAACTCAAAAGAGAGGCGACATAAGCGAATAATGAAGAATAGAGAATCTGCAGCACGATCAAGAGCAAGAAAACAGGAAGATATATTTGAGTTGAAGAAAAAAGTCAAGAGCTTGGAAGAAGAGAATGACAGACTTAAAAGACAACAACATGTTTGTTTTTATGCAAGCAATCAGCAACAAAAGAGGAAGGGAAATCTGTATCGAACATCAACAGCTCCATTTTAA

Protein sequence

>MsG0880045606.01.T01

MEDVWKDINLPSLPNHMSITVSSPSLMTPSSLHSTINLNSLPEFHFDPLAHNDLQLEQNHHHTTTVSKVEALLSNSKERRHKRIMKNRESAARSRARKQEDIFELKKKVKSLEEENDRLKRQQHVCFYASNQQQKRKGNLYRTSTAPF*