AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045774.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045774.01.T01 MTR_8g078490 95.500 200 9 0 1 200 1054 1253 2.93e-132 400
MsG0880045774.01.T01 MTR_4g132610 86.500 200 27 0 1 200 848 1047 1.16e-119 363
MsG0880045774.01.T01 MTR_5g018850 79.000 200 42 0 1 200 1308 1507 7.57e-109 341
MsG0880045774.01.T01 MTR_8g078505 74.872 195 46 2 1 195 342 533 6.87e-98 294
MsG0880045774.01.T01 MTR_4g010830 40.000 220 103 6 4 200 767 980 4.37e-45 159
MsG0880045774.01.T01 MTR_5g013420 40.000 220 103 7 4 200 876 1089 8.89e-45 159
MsG0880045774.01.T01 MTR_5g013420 39.545 220 104 7 4 200 876 1089 1.22e-43 155
MsG0880045774.01.T01 MTR_4g010550 38.049 205 112 5 4 200 267 464 3.98e-37 134
MsG0880045774.01.T01 MTR_7g088370 36.058 208 106 5 5 196 505 701 5.00e-35 130
MsG0880045774.01.T01 MTR_7g052480 36.245 229 107 6 3 200 336 556 1.01e-34 129
MsG0880045774.01.T01 MTR_3g011440 36.406 217 110 5 5 196 447 660 1.60e-34 129
MsG0880045774.01.T01 MTR_7g450730 34.951 206 112 5 14 200 303 505 4.84e-32 121
MsG0880045774.01.T01 MTR_1g080340 39.894 188 101 6 20 198 400 584 9.36e-32 120
MsG0880045774.01.T01 MTR_8g042750 33.180 217 116 6 5 196 472 684 1.24e-31 120
MsG0880045774.01.T01 MTR_7g084090 33.624 229 115 6 3 200 535 757 5.40e-31 119
MsG0880045774.01.T01 MTR_6g061270 32.328 232 114 5 3 200 472 694 6.38e-31 119
MsG0880045774.01.T01 MTR_7g445710 36.224 196 92 6 38 200 348 543 1.20e-29 114
MsG0880045774.01.T01 MTR_1g069570 36.364 187 106 5 20 197 561 743 2.40e-29 114
MsG0880045774.01.T01 MTR_7g445600 40.000 140 58 2 38 177 243 356 3.63e-29 111
MsG0880045774.01.T01 MTR_1g048950 36.683 199 109 3 5 200 349 533 4.42e-29 113
MsG0880045774.01.T01 MTR_6g059310 36.264 182 100 3 18 199 85 250 1.65e-28 109
MsG0880045774.01.T01 MTR_6g059310 36.264 182 100 3 18 199 85 250 1.72e-28 109
MsG0880045774.01.T01 MTR_6g061200 33.981 206 116 5 3 200 472 665 3.07e-28 111
MsG0880045774.01.T01 MTR_1g098000 36.782 174 91 3 28 199 78 234 1.49e-26 105
MsG0880045774.01.T01 MTR_7g098390 36.413 184 110 4 20 197 517 699 3.20e-26 105
MsG0880045774.01.T01 MTR_1g098370 35.632 174 93 3 28 199 81 237 7.20e-26 103
MsG0880045774.01.T01 MTR_7g445530 34.337 166 83 3 38 177 348 513 3.69e-24 99.4
MsG0880045774.01.T01 MTR_0071s0100 34.659 176 97 4 24 199 191 348 4.07e-24 98.2
MsG0880045774.01.T01 MTR_1g035420 30.645 186 115 3 3 176 461 644 4.39e-24 99.4
MsG0880045774.01.T01 MTR_8g070070 31.746 189 115 4 1 176 568 755 5.61e-24 99.0
MsG0880045774.01.T01 MTR_8g070075 31.606 193 110 5 1 176 561 748 8.95e-24 98.6
MsG0880045774.01.T01 MTR_8g071030 29.630 189 119 4 1 176 548 735 1.50e-23 97.8
MsG0880045774.01.T01 MTR_3g088625 36.257 171 91 4 28 196 1201 1355 4.42e-23 96.7
MsG0880045774.01.T01 MTR_3g088625 36.257 171 91 4 28 196 1307 1461 4.84e-23 96.7
MsG0880045774.01.T01 MTR_6g043960 29.843 191 117 4 3 179 296 483 2.12e-22 94.4
MsG0880045774.01.T01 MTR_6g044690 29.843 191 117 4 3 179 378 565 3.87e-22 93.6
MsG0880045774.01.T01 MTR_0376s0030 30.319 188 114 4 3 176 376 560 4.07e-22 93.6
MsG0880045774.01.T01 MTR_1g035400 30.481 187 114 3 3 176 380 563 3.49e-21 90.9
MsG0880045774.01.T01 MTR_2g054460 29.319 191 118 4 3 179 278 465 6.18e-21 90.1
MsG0880045774.01.T01 MTR_1g012910 34.375 160 81 5 47 199 528 670 5.83e-20 87.4
MsG0880045774.01.T01 MTR_6g027690 32.086 187 108 4 23 199 242 419 5.89e-20 87.0
MsG0880045774.01.T01 MTR_1g012910 34.375 160 81 5 47 199 365 507 6.52e-20 87.0
MsG0880045774.01.T01 MTR_1g069570 36.667 120 68 3 20 135 561 676 4.78e-18 82.0
MsG0880045774.01.T01 MTR_2g036060 35.099 151 78 4 46 194 1033 1165 8.43e-18 81.3
MsG0880045774.01.T01 MTR_2g036060 35.099 151 78 4 46 194 1058 1190 9.39e-18 81.3
MsG0880045774.01.T01 MTR_1g012890 32.298 161 83 5 47 199 225 367 1.09e-17 80.1
MsG0880045774.01.T01 MTR_7g021365 33.125 160 92 4 37 196 897 1041 5.02e-17 79.0
MsG0880045774.01.T01 MTR_1g008230 35.135 148 69 6 56 196 903 1030 1.92e-14 71.6
MsG0880045774.01.T01 MTR_1g008230 34.459 148 70 5 56 196 625 752 2.18e-14 71.2
MsG0880045774.01.T01 MTR_8g027725 33.333 165 83 6 39 196 786 930 4.90e-14 70.5
MsG0880045774.01.T01 MTR_8g027725 33.333 165 83 6 39 196 801 945 5.15e-14 70.5
MsG0880045774.01.T01 MTR_7g084090 46.053 76 38 2 3 76 535 609 7.88e-14 69.7
MsG0880045774.01.T01 MTR_3g091310 35.811 148 68 7 56 196 838 965 1.53e-13 68.9
MsG0880045774.01.T01 MTR_3g091310 35.135 148 69 6 56 196 932 1059 1.66e-13 68.9
MsG0880045774.01.T01 MTR_7g117355 32.515 163 87 5 39 196 816 960 2.11e-13 68.6
MsG0880045774.01.T01 MTR_7g055660 28.859 149 88 3 31 178 567 698 2.25e-13 68.6
MsG0880045774.01.T01 MTR_5g016870 27.397 146 89 2 34 179 703 831 1.30e-12 66.2
MsG0880045774.01.T01 MTR_1g064770 40.741 81 44 2 1 80 14 91 1.80e-12 61.2
MsG0880045774.01.T01 MTR_1g086980 28.906 128 74 2 51 178 488 598 7.79e-12 63.9
MsG0880045774.01.T01 MTR_1g086980 28.906 128 74 2 51 178 668 778 8.07e-12 63.9
MsG0880045774.01.T01 MTR_1g086980 28.906 128 74 2 51 178 678 788 8.09e-12 63.9
MsG0880045774.01.T01 MTR_1g086980 28.906 128 74 2 51 178 637 747 8.17e-12 63.9
MsG0880045774.01.T01 MTR_1g086980 28.906 128 74 2 51 178 688 798 8.58e-12 63.9
MsG0880045774.01.T01 MTR_1g086980 28.906 128 74 2 51 178 616 726 8.68e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045774.01.T01 AT2G23740 61.881 202 74 1 1 199 1173 1374 1.10e-79 258
MsG0880045774.01.T01 AT2G23740 61.881 202 74 1 1 199 1180 1381 1.21e-79 258
MsG0880045774.01.T01 AT2G23740 61.881 202 74 1 1 199 1180 1381 1.21e-79 258
MsG0880045774.01.T01 AT2G23740 61.881 202 74 1 1 199 1180 1381 1.21e-79 258
MsG0880045774.01.T01 AT2G23740 65.185 135 47 0 1 135 1180 1314 1.58e-55 189
MsG0880045774.01.T01 AT2G23740 65.185 135 47 0 1 135 1180 1314 1.58e-55 189
MsG0880045774.01.T01 AT2G35160 40.196 204 98 6 4 200 572 758 6.54e-41 147
MsG0880045774.01.T01 AT2G35160 40.196 204 98 6 4 200 608 794 6.63e-41 147
MsG0880045774.01.T01 AT2G35160 40.196 204 98 6 4 200 608 794 6.63e-41 147
MsG0880045774.01.T01 AT2G35160 40.196 204 98 6 4 200 608 794 6.63e-41 147
MsG0880045774.01.T01 AT2G35160 40.196 204 98 6 4 200 608 794 6.63e-41 147
MsG0880045774.01.T01 AT2G22740 37.557 221 108 7 4 200 576 790 2.85e-40 145
MsG0880045774.01.T01 AT2G22740 37.557 221 108 7 4 200 576 790 2.85e-40 145
MsG0880045774.01.T01 AT1G73100 33.796 216 111 5 10 199 459 668 4.63e-34 127
MsG0880045774.01.T01 AT5G04940 35.211 213 114 7 5 196 457 666 2.72e-32 122
MsG0880045774.01.T01 AT5G04940 35.211 213 114 7 5 196 457 666 2.72e-32 122
MsG0880045774.01.T01 AT3G04380 36.559 186 109 5 20 198 234 417 3.64e-32 120
MsG0880045774.01.T01 AT3G04380 36.559 186 109 5 20 198 250 433 3.96e-32 120
MsG0880045774.01.T01 AT3G04380 36.559 186 109 5 20 198 250 433 4.40e-32 120
MsG0880045774.01.T01 AT3G04380 36.559 186 109 5 20 198 277 460 5.18e-32 120
MsG0880045774.01.T01 AT3G04380 36.559 186 109 5 20 198 261 444 5.28e-32 120
MsG0880045774.01.T01 AT5G13960 35.526 228 107 6 5 200 271 490 5.50e-32 120
MsG0880045774.01.T01 AT3G04380 36.559 186 109 5 20 198 277 460 5.83e-32 120
MsG0880045774.01.T01 AT5G13960 35.526 228 107 6 5 200 405 624 1.12e-31 120
MsG0880045774.01.T01 AT1G17770 33.636 220 107 6 5 196 481 689 2.84e-29 114
MsG0880045774.01.T01 AT1G04050 37.500 184 105 6 21 198 542 721 1.25e-28 112
MsG0880045774.01.T01 AT1G04050 37.500 184 105 6 21 198 542 721 1.25e-28 112
MsG0880045774.01.T01 AT1G04050 37.500 184 105 6 21 198 438 617 1.87e-28 112
MsG0880045774.01.T01 AT3G03750 37.634 186 108 4 20 199 166 349 1.03e-27 107
MsG0880045774.01.T01 AT1G77300 36.471 170 92 3 28 196 1009 1163 2.35e-25 103
MsG0880045774.01.T01 AT1G77300 36.471 170 92 3 28 196 1009 1163 3.02e-25 102
MsG0880045774.01.T01 AT4G30860 34.091 176 98 4 24 199 307 464 3.57e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 443 635 3.59e-24 99.8
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 443 635 3.59e-24 99.8
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 443 635 3.59e-24 99.8
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 443 635 3.59e-24 99.8
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 535 727 4.20e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 535 727 4.20e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 512 704 4.25e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 512 704 4.25e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 512 704 4.25e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 512 704 4.25e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 423 615 5.25e-24 99.4
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 515 707 6.74e-24 99.0
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 515 707 6.74e-24 99.0
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 492 684 7.36e-24 99.0
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 492 684 7.36e-24 99.0
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 492 684 7.36e-24 99.0
MsG0880045774.01.T01 AT5G43990 34.826 201 108 7 13 198 492 684 7.36e-24 99.0
MsG0880045774.01.T01 AT2G24740 31.250 224 103 9 4 196 548 751 3.12e-22 94.0
MsG0880045774.01.T01 AT3G59960 33.537 164 93 3 36 199 102 249 5.05e-22 91.3
MsG0880045774.01.T01 AT3G59960 33.537 164 93 3 36 199 102 249 5.05e-22 91.3
MsG0880045774.01.T01 AT3G59960 33.537 164 93 3 36 199 102 249 5.05e-22 91.3
MsG0880045774.01.T01 AT4G13460 29.508 183 114 4 7 176 456 636 5.93e-22 93.2
MsG0880045774.01.T01 AT4G13460 29.508 183 114 4 7 176 456 636 5.93e-22 93.2
MsG0880045774.01.T01 AT3G59960 33.537 164 93 3 36 199 102 249 8.32e-22 91.3
MsG0880045774.01.T01 AT1G76710 33.333 174 97 4 28 199 72 228 4.05e-21 90.9
MsG0880045774.01.T01 AT1G76710 33.333 174 97 4 28 199 72 228 4.65e-21 90.5
MsG0880045774.01.T01 AT1G76710 32.184 174 99 3 28 199 72 228 4.86e-21 90.5
MsG0880045774.01.T01 AT1G76710 32.184 174 99 3 28 199 72 228 4.86e-21 90.5
MsG0880045774.01.T01 AT2G44150 33.537 164 93 3 36 199 107 254 5.40e-21 89.4
MsG0880045774.01.T01 AT2G33290 30.435 184 116 3 4 176 455 637 1.23e-20 89.4
MsG0880045774.01.T01 AT2G33290 30.435 184 116 3 4 176 455 637 1.23e-20 89.4
MsG0880045774.01.T01 AT2G33290 30.435 184 116 3 4 176 455 637 1.23e-20 89.4
MsG0880045774.01.T01 AT2G33290 30.435 184 116 3 4 176 455 637 1.23e-20 89.4
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT5G42400 37.241 145 71 4 57 199 1261 1387 2.06e-20 89.0
MsG0880045774.01.T01 AT3G03750 32.796 186 101 5 20 199 166 333 2.06e-17 79.3
MsG0880045774.01.T01 AT4G27910 37.162 148 66 7 56 196 896 1023 1.52e-15 74.7
MsG0880045774.01.T01 AT3G61740 35.811 148 69 6 56 196 886 1014 1.53e-15 74.7
MsG0880045774.01.T01 AT3G61740 35.811 148 69 6 56 196 850 978 1.55e-15 74.7
MsG0880045774.01.T01 AT1G05830 31.447 159 94 4 38 196 912 1055 1.18e-14 72.4
MsG0880045774.01.T01 AT1G05830 31.447 159 94 4 38 196 912 1055 1.18e-14 72.4
MsG0880045774.01.T01 AT1G05830 31.447 159 94 4 38 196 912 1055 1.18e-14 72.4
MsG0880045774.01.T01 AT1G05830 31.447 159 94 4 38 196 912 1055 1.18e-14 72.4
MsG0880045774.01.T01 AT5G53430 37.838 148 65 7 56 196 912 1039 1.36e-14 72.0
MsG0880045774.01.T01 AT2G23380 29.577 142 81 3 38 179 747 869 2.09e-14 71.6
MsG0880045774.01.T01 AT2G23380 29.577 142 81 3 38 179 520 642 2.29e-14 71.2
MsG0880045774.01.T01 AT4G02020 28.906 128 74 2 51 178 713 823 2.29e-12 65.5

Find 35 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTCTTGTAGAGAGTA+TGG 0.211702 8:-64196373 MsG0880045774.01.T01:CDS
AAGGGCTGGTGAGGCTATTT+CGG 0.269746 8:-64197045 MsG0880045774.01.T01:CDS
AGGGCTGGTGAGGCTATTTC+GGG 0.290527 8:-64197044 MsG0880045774.01.T01:CDS
GTTCGCAGGGATGGGGTGTA+AGG 0.327728 8:-64197064 MsG0880045774.01.T01:intron
CCATTCTGCAATATTCTGTT+TGG 0.337846 8:+64197200 None:intergenic
GTCATTGATTCTACTAGATA+TGG 0.340264 8:-64196781 MsG0880045774.01.T01:CDS
ATTCGACCATTGTTATCATA+TGG 0.367075 8:+64197528 None:intergenic
TAACAATGGTCGAATCATAT+TGG 0.391371 8:-64197520 MsG0880045774.01.T01:CDS
ACTTGGTAATTCACAAGATT+AGG 0.412904 8:+64196390 None:intergenic
TGTCAAGGTTCATCAATAAC+AGG 0.419051 8:-64196753 MsG0880045774.01.T01:intron
GATTGTAAACGTTCGCATAT+CGG 0.441063 8:-64196351 MsG0880045774.01.T01:CDS
AAGCTCATAGTGATAATTGT+AGG 0.448877 8:+64196152 None:intergenic
ATGGGGTGTAAGGGCTGGTG+AGG 0.462718 8:-64197054 MsG0880045774.01.T01:CDS
GAATGGAATTCGCGTTAAGT+TGG 0.466459 8:-64197183 MsG0880045774.01.T01:CDS
CAGGGATGGGGTGTAAGGGC+TGG 0.472155 8:-64197059 MsG0880045774.01.T01:CDS
CCATACTCTCTACAAGAACT+TGG 0.472734 8:+64196373 None:intergenic
CAATTATCACTATGAGCTTG+TGG 0.510207 8:-64196148 MsG0880045774.01.T01:CDS
TTCGCAGGGATGGGGTGTAA+GGG 0.522392 8:-64197063 MsG0880045774.01.T01:intron
CTATCTGGTTCGCAGGGATG+GGG 0.532958 8:-64197071 MsG0880045774.01.T01:intron
TCTTGTTAACAGATTGCTAA+GGG 0.540203 8:-64196186 MsG0880045774.01.T01:intron
TATGAGCTTGTGGATGGAGA+AGG 0.551944 8:-64196138 MsG0880045774.01.T01:CDS
TGTTTAGCTTCTAGTACAAG+CGG 0.558884 8:+64196079 None:intergenic
TATCACTATGAGCTTGTGGA+TGG 0.559624 8:-64196144 MsG0880045774.01.T01:CDS
CCAAACAGAATATTGCAGAA+TGG 0.566794 8:-64197200 MsG0880045774.01.T01:CDS
TTCTTGTTAACAGATTGCTA+AGG 0.568595 8:-64196187 MsG0880045774.01.T01:intron
CAATGGTCGAATCATATTGG+AGG 0.574762 8:-64197517 MsG0880045774.01.T01:intron
TGTGTGGATCTTCGAAGTGC+AGG 0.580078 8:-64196104 MsG0880045774.01.T01:CDS
GAAGGATCTCCTTGTCTGTG+TGG 0.595556 8:-64196120 MsG0880045774.01.T01:CDS
CTAGATATGGAAATGTGTCA+AGG 0.622639 8:-64196768 MsG0880045774.01.T01:CDS
TTCGAAGATCCACACAGACA+AGG 0.634122 8:+64196111 None:intergenic
AGGCACGCAACAGACGTGAA+AGG 0.641213 8:-64196974 MsG0880045774.01.T01:intron
ACATTTGTGTGTGAGTACAT+TGG 0.646827 8:-64197017 MsG0880045774.01.T01:CDS
GCTGGTGAGGCTATTTCGGG+CGG 0.656790 8:-64197041 MsG0880045774.01.T01:CDS
TGTGTGTGAGTACATTGGAG+AGG 0.665032 8:-64197012 MsG0880045774.01.T01:CDS
AAGTTTCCATATGATAACAA+TGG 0.674864 8:-64197534 MsG0880045774.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATACATATATAAAGAA+GGG + Chr8:64196307-64196326 None:intergenic 10.0%
!! TAATAATACATATATAAAGA+AGG + Chr8:64196308-64196327 None:intergenic 10.0%
!!! ATTTAAAACAAAATTATTGA+TGG - Chr8:64197190-64197209 MsG0880045774.01.T01:CDS 10.0%
!! CTATACATTTAATAACTTAT+TGG + Chr8:64197052-64197071 None:intergenic 15.0%
!! TAAATTAAAAATGACTCTAA+AGG - Chr8:64196517-64196536 MsG0880045774.01.T01:intron 15.0%
!!! AAATAGCTTATATTTTGTAA+GGG + Chr8:64197174-64197193 None:intergenic 15.0%
!!! AATGAAAATTTTGGATATAA+TGG + Chr8:64196166-64196185 None:intergenic 15.0%
!!! ATTCGAAAAAATGAAAATTT+TGG + Chr8:64196175-64196194 None:intergenic 15.0%
!!! TAAATAGCTTATATTTTGTA+AGG + Chr8:64197175-64197194 None:intergenic 15.0%
!! ATGTTATAACTATAACTATC+TGG - Chr8:64196546-64196565 MsG0880045774.01.T01:intron 20.0%
!! GAAAAGACAAAAAAATAGAA+TGG - Chr8:64196915-64196934 MsG0880045774.01.T01:intron 20.0%
!!! AGTTTTTAAAACAGAGAAAA+AGG - Chr8:64196473-64196492 MsG0880045774.01.T01:intron 20.0%
!!! TTGTAAGGGTTTTAAATAAA+AGG + Chr8:64197160-64197179 None:intergenic 20.0%
!!! TTTCTTAATTTTAACTGACA+TGG - Chr8:64196724-64196743 MsG0880045774.01.T01:intron 20.0%
! AAATTTCTCTACAAAACTAC+AGG - Chr8:64196356-64196375 MsG0880045774.01.T01:CDS 25.0%
! AAGATATAATTTCATCTAGC+TGG - Chr8:64196695-64196714 MsG0880045774.01.T01:intron 25.0%
! AAGTTTCCATATGATAACAA+TGG - Chr8:64196098-64196117 MsG0880045774.01.T01:CDS 25.0%
! AGTCAACATTATTATGCATT+AGG - Chr8:64197411-64197430 MsG0880045774.01.T01:intron 25.0%
! ATTTAGCAAAAGAAGAATAG+TGG + Chr8:64196502-64196521 None:intergenic 25.0%
! TCAAAACTATAATTTCTCGA+AGG + Chr8:64196993-64197012 None:intergenic 25.0%
!! CGAATATTATATGCATTGAT+TGG - Chr8:64196190-64196209 MsG0880045774.01.T01:intron 25.0%
!!! AAGTTGATGAAAAAGTAGAA+AGG - Chr8:64197094-64197113 MsG0880045774.01.T01:intron 25.0%
!!! AGTTGATGAAAAAGTAGAAA+GGG - Chr8:64197095-64197114 MsG0880045774.01.T01:intron 25.0%
AAGCTCATAGTGATAATTGT+AGG + Chr8:64197483-64197502 None:intergenic 30.0%
ATTCGACCATTGTTATCATA+TGG + Chr8:64196107-64196126 None:intergenic 30.0%
CAATCTGTTAACAAGAAACA+AGG + Chr8:64197442-64197461 None:intergenic 30.0%
TAACAATGGTCGAATCATAT+TGG - Chr8:64196112-64196131 MsG0880045774.01.T01:CDS 30.0%
TAATGGCAGCTTACAATTAA+TGG + Chr8:64196149-64196168 None:intergenic 30.0%
TCCTAACATATTCATTGTGT+AGG - Chr8:64196240-64196259 MsG0880045774.01.T01:intron 30.0%
TCCTACACAATGAATATGTT+AGG + Chr8:64196244-64196263 None:intergenic 30.0%
TCTTGTTAACAGATTGCTAA+GGG - Chr8:64197446-64197465 MsG0880045774.01.T01:intron 30.0%
TGAATATCTTTCTCCTATAC+TGG - Chr8:64196333-64196352 MsG0880045774.01.T01:CDS 30.0%
TGTAGAGAAATTTCCAGTAT+AGG + Chr8:64196349-64196368 None:intergenic 30.0%
TTCTTGTTAACAGATTGCTA+AGG - Chr8:64197445-64197464 MsG0880045774.01.T01:intron 30.0%
! ACTTGGTAATTCACAAGATT+AGG + Chr8:64197245-64197264 None:intergenic 30.0%
!! GTCATTGATTCTACTAGATA+TGG - Chr8:64196851-64196870 MsG0880045774.01.T01:CDS 30.0%
!!! GGTTGTTGTTTTTCAACAAA+AGG + Chr8:64197139-64197158 None:intergenic 30.0%
ACATTTGTGTGTGAGTACAT+TGG - Chr8:64196615-64196634 MsG0880045774.01.T01:intron 35.0%
CAATTATCACTATGAGCTTG+TGG - Chr8:64197484-64197503 MsG0880045774.01.T01:intron 35.0%
CCAAACAGAATATTGCAGAA+TGG - Chr8:64196432-64196451 MsG0880045774.01.T01:intron 35.0%
CCATTCTGCAATATTCTGTT+TGG + Chr8:64196435-64196454 None:intergenic 35.0%
CTAGATATGGAAATGTGTCA+AGG - Chr8:64196864-64196883 MsG0880045774.01.T01:CDS 35.0%
GATTGTAAACGTTCGCATAT+CGG - Chr8:64197281-64197300 MsG0880045774.01.T01:intron 35.0%
TGTCAAGGTTCATCAATAAC+AGG - Chr8:64196879-64196898 MsG0880045774.01.T01:intron 35.0%
TTCTCTACAAAACTACAGGA+AGG - Chr8:64196360-64196379 MsG0880045774.01.T01:CDS 35.0%
! GCAATGTTCTTTTCCATATC+TGG + Chr8:64196762-64196781 None:intergenic 35.0%
CAATGGTCGAATCATATTGG+AGG - Chr8:64196115-64196134 MsG0880045774.01.T01:CDS 40.0%
CCAAGTTCTTGTAGAGAGTA+TGG - Chr8:64197259-64197278 MsG0880045774.01.T01:intron 40.0%
CCATACTCTCTACAAGAACT+TGG + Chr8:64197262-64197281 None:intergenic 40.0%
GAATGGAATTCGCGTTAAGT+TGG - Chr8:64196449-64196468 MsG0880045774.01.T01:intron 40.0%
GTCTGTGTCAATACCAGATA+TGG - Chr8:64196746-64196765 MsG0880045774.01.T01:intron 40.0%
TATCACTATGAGCTTGTGGA+TGG - Chr8:64197488-64197507 MsG0880045774.01.T01:intron 40.0%
! ACTATAACTATCTGGTTCGC+AGG - Chr8:64196554-64196573 MsG0880045774.01.T01:intron 40.0%
! CTATAACTATCTGGTTCGCA+GGG - Chr8:64196555-64196574 MsG0880045774.01.T01:intron 40.0%
TATGAGCTTGTGGATGGAGA+AGG - Chr8:64197494-64197513 MsG0880045774.01.T01:intron 45.0%
TGTGTGTGAGTACATTGGAG+AGG - Chr8:64196620-64196639 MsG0880045774.01.T01:intron 45.0%
TTCGAAGATCCACACAGACA+AGG + Chr8:64197524-64197543 None:intergenic 45.0%
!!! AGAGGTTTTAGACGAGCAAG+AGG - Chr8:64196638-64196657 MsG0880045774.01.T01:intron 45.0%
GAAGGATCTCCTTGTCTGTG+TGG - Chr8:64197512-64197531 MsG0880045774.01.T01:intron 50.0%
TGTGTGGATCTTCGAAGTGC+AGG - Chr8:64197528-64197547 MsG0880045774.01.T01:CDS 50.0%
! AACTATCTGGTTCGCAGGGA+TGG - Chr8:64196559-64196578 MsG0880045774.01.T01:intron 50.0%
! AAGGGCTGGTGAGGCTATTT+CGG - Chr8:64196587-64196606 MsG0880045774.01.T01:intron 50.0%
! ACTATCTGGTTCGCAGGGAT+GGG - Chr8:64196560-64196579 MsG0880045774.01.T01:intron 50.0%
AGGCACGCAACAGACGTGAA+AGG - Chr8:64196658-64196677 MsG0880045774.01.T01:intron 55.0%
TTCGCAGGGATGGGGTGTAA+GGG - Chr8:64196569-64196588 MsG0880045774.01.T01:intron 55.0%
! AGGGCTGGTGAGGCTATTTC+GGG - Chr8:64196588-64196607 MsG0880045774.01.T01:intron 55.0%
! CTATCTGGTTCGCAGGGATG+GGG - Chr8:64196561-64196580 MsG0880045774.01.T01:intron 55.0%
GTTCGCAGGGATGGGGTGTA+AGG - Chr8:64196568-64196587 MsG0880045774.01.T01:intron 60.0%
! ATGGGGTGTAAGGGCTGGTG+AGG - Chr8:64196578-64196597 MsG0880045774.01.T01:intron 60.0%
! GCTGGTGAGGCTATTTCGGG+CGG - Chr8:64196591-64196610 MsG0880045774.01.T01:intron 60.0%
CAGGGATGGGGTGTAAGGGC+TGG - Chr8:64196573-64196592 MsG0880045774.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 64196089 64197565 64196089 ID=MsG0880045774.01;Name=MsG0880045774.01
Chr8 mRNA 64196089 64197565 64196089 ID=MsG0880045774.01.T01;Parent=MsG0880045774.01;Name=MsG0880045774.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|6|0|200
Chr8 exon 64197518 64197565 64197518 ID=MsG0880045774.01.T01:exon:13392;Parent=MsG0880045774.01.T01
Chr8 exon 64197160 64197276 64197160 ID=MsG0880045774.01.T01:exon:13391;Parent=MsG0880045774.01.T01
Chr8 exon 64196975 64197078 64196975 ID=MsG0880045774.01.T01:exon:13390;Parent=MsG0880045774.01.T01
Chr8 exon 64196754 64196891 64196754 ID=MsG0880045774.01.T01:exon:13389;Parent=MsG0880045774.01.T01
Chr8 exon 64196332 64196419 64196332 ID=MsG0880045774.01.T01:exon:13388;Parent=MsG0880045774.01.T01
Chr8 exon 64196089 64196196 64196089 ID=MsG0880045774.01.T01:exon:13387;Parent=MsG0880045774.01.T01
Chr8 CDS 64197518 64197565 64197518 ID=MsG0880045774.01.T01:cds;Parent=MsG0880045774.01.T01
Chr8 CDS 64197160 64197276 64197160 ID=MsG0880045774.01.T01:cds;Parent=MsG0880045774.01.T01
Chr8 CDS 64196975 64197078 64196975 ID=MsG0880045774.01.T01:cds;Parent=MsG0880045774.01.T01
Chr8 CDS 64196754 64196891 64196754 ID=MsG0880045774.01.T01:cds;Parent=MsG0880045774.01.T01
Chr8 CDS 64196332 64196419 64196332 ID=MsG0880045774.01.T01:cds;Parent=MsG0880045774.01.T01
Chr8 CDS 64196089 64196196 64196089 ID=MsG0880045774.01.T01:cds;Parent=MsG0880045774.01.T01
Gene Sequence

>MsG0880045774.01.T01

ATGCGCAACAAGTTTCCATATGATAACAATGGTCGAATCATATTGGAGGAAGGTTATCTTGTGTATGAGTGCAACGAAGAGTGCAAATGTGATAAAACTTGTCCAAACAGAATATTGCAGAATGGAATTCGCGTTAAGTTGGAAGTTTTTAAAACAGAGAAAAAGGGATGGGGTGTAAGGGCTGGTGAGGCTATTTCGGGCGGCACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGACGAGCAAGAGGCACGCAACAGACGTGAAAGATATGGAAAAGAACATTGCAGTTATTTCTTTGACGTTGATGCTCGTGTTAATGATATGAGTCGATTGATCGAAAGACAAGATCGATATGTCATTGATTCTACTAGATATGGAAATGTGTCAAGGTTCATCAATAACAGCTGTTCACCTAATCTTGTGAATTACCAAGTTCTTGTAGAGAGTATGGATTGTAAACGTTCGCATATCGGTCTTTACGCAAGTCAAGATATTGCTAAGGGTGAAGAATTAACCTACAATTATCACTATGAGCTTGTGGATGGAGAAGGATCTCCTTGTCTGTGTGGATCTTCGAAGTGCAGGAACCGCTTGTACTAG
Protein sequence

>MsG0880045774.01.T01

MRNKFPYDNNGRIILEEGYLVYECNEECKCDKTCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAISGGTFVCEYIGEVLDEQEARNRRERYGKEHCSYFFDVDARVNDMSRLIERQDRYVIDSTRYGNVSRFINNSCSPNLVNYQVLVESMDCKRSHIGLYASQDIAKGEELTYNYHYELVDGEGSPCLCGSSKCRNRLY*