AlfalfaGEDB | MsG0880045862.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045862.01

KEGG: -
GO: GO:0003677
PFAM: PF02362

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045862.01.T01	XP_039685096.1	85	200	4	2	1	200	1	174	1.48E-113	342

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045862.01.T01	Q5KQI4	55.294	85	38	0	115	199	116	200	1.78E-26	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045862.01.T01	A0A1S2YSD0	69.500	200	37	3	1	200	4	179	8.66e-86	272

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TFs/TRs:

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Gene ID	Type	Classification
MsG0880045862.01.T01	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045862.01.T01	MTR_3g101520	48.454	97	50	110	206	98	194	4.08e-25	99.4
MsG0880045862.01.T01	MTR_3g101520	48.454	97	50	110	206	106	202	7.17e-25	99.0
MsG0880045862.01.T01	MTR_2g102450	59.211	76	31	124	199	74	149	2.48e-24	99.8
MsG0880045862.01.T01	MTR_2g102450	59.211	76	31	124	199	128	203	3.24e-24	100
MsG0880045862.01.T01	MTR_4g008310	46.250	80	43	120	199	199	278	8.16e-17	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045862.01.T01	AT3G19184	45.361	97	53	0	110	206	102	198	1.36e-23	96.7
MsG0880045862.01.T01	AT3G19184	45.361	97	53	0	110	206	102	198	1.37e-23	96.7
MsG0880045862.01.T01	AT5G42700	54.023	87	36	1	113	199	64	146	5.81e-23	92.8
MsG0880045862.01.T01	AT5G42700	54.023	87	36	1	113	199	109	191	1.19e-22	93.2
MsG0880045862.01.T01	AT5G58280	48.684	76	39	0	124	199	113	188	6.31e-14	70.1
MsG0880045862.01.T01	AT5G58280	48.684	76	39	0	124	199	146	221	8.66e-14	70.1
MsG0880045862.01.T01	AT5G58280	48.684	76	39	0	124	199	145	220	8.85e-14	70.1

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Find 38 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACATTGCATGTAAGAC+AGG	0.526557	8:+65596946	MsG0880045862.01.T01:CDS
AATACAACAAATTAAAAGTA+TGG	0.346760	8:-65597226	None:intergenic
ACAACATTTAAAGGAGACTT+TGG	0.371950	8:-65595575	None:intergenic
ACAGATGGAACATATTCTCG+TGG	0.680750	8:+65596549	MsG0880045862.01.T01:CDS
ACTCCATGATCATCATTTCG+TGG	0.602909	8:-65595494	None:intergenic
AGACAGGATTGAGTGCTGGT+TGG	0.629436	8:+65596962	MsG0880045862.01.T01:CDS
AGCAAGGACTTCACAAAACT+AGG	0.525979	8:-65596636	None:intergenic
AGCTACATGTGATCTGAGCA+AGG	0.622819	8:-65596652	None:intergenic
ATCACATTAGAAGATGAATA+TGG	0.425783	8:+65596907	MsG0880045862.01.T01:CDS
ATTAATGTCGAAAATGGTGG+CGG	0.572487	8:+65595421	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACATTGCATGTAAGAC+AGG	+	Chr8:65596946-65596965	MsG0880045862.01.T01:CDS	30.0%
AATGGTGAAAAAAGATGTGA+TGG	+	Chr8:65595466-65595485	MsG0880045862.01.T01:CDS	30.0%
AATTGAACCCACCAAATTTA+AGG	+	Chr8:65597040-65597059	MsG0880045862.01.T01:intron	30.0%
ACAACATTTAAAGGAGACTT+TGG	-	Chr8:65595578-65595597	None:intergenic	30.0%
CAAAAAGAAATCACAAGACA+TGG	-	Chr8:65596831-65596850	None:intergenic	30.0%
CAACCAAACAATTAGATGAA+AGG	-	Chr8:65596239-65596258	None:intergenic	30.0%
TACTAAACAATGTATCACAG+AGG	+	Chr8:65596027-65596046	MsG0880045862.01.T01:intron	30.0%
TCAATCCAGATTGTGAATAA+CGG	+	Chr8:65595935-65595954	MsG0880045862.01.T01:intron	30.0%
TTGATTGCAGTTCAACTAAA+GGG	+	Chr8:65596523-65596542	MsG0880045862.01.T01:intron	30.0%
TTTGATTGCAGTTCAACTAA+AGG	+	Chr8:65596522-65596541	MsG0880045862.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	65595434	65597262	65595434	ID=MsG0880045862.01;Name=MsG0880045862.01
Chr8	mRNA	65595434	65597262	65595434	ID=MsG0880045862.01.T01;Parent=MsG0880045862.01;Name=MsG0880045862.01.T01;_AED=0.51;_eAED=0.61;_QI=0\|0.6\|0.5\|1\|0.4\|0.5\|6\|0\|247
Chr8	exon	65595434	65595637	65595434	ID=MsG0880045862.01.T01:exon:24975;Parent=MsG0880045862.01.T01
Chr8	exon	65595816	65595875	65595816	ID=MsG0880045862.01.T01:exon:24976;Parent=MsG0880045862.01.T01
Chr8	exon	65596397	65596434	65596397	ID=MsG0880045862.01.T01:exon:24977;Parent=MsG0880045862.01.T01
Chr8	exon	65596533	65596689	65596533	ID=MsG0880045862.01.T01:exon:24978;Parent=MsG0880045862.01.T01
Chr8	exon	65596856	65596989	65596856	ID=MsG0880045862.01.T01:exon:24979;Parent=MsG0880045862.01.T01
Chr8	exon	65597112	65597262	65597112	ID=MsG0880045862.01.T01:exon:24980;Parent=MsG0880045862.01.T01
Chr8	CDS	65595434	65595637	65595434	ID=MsG0880045862.01.T01:cds;Parent=MsG0880045862.01.T01
Chr8	CDS	65595816	65595875	65595816	ID=MsG0880045862.01.T01:cds;Parent=MsG0880045862.01.T01
Chr8	CDS	65596397	65596434	65596397	ID=MsG0880045862.01.T01:cds;Parent=MsG0880045862.01.T01
Chr8	CDS	65596533	65596689	65596533	ID=MsG0880045862.01.T01:cds;Parent=MsG0880045862.01.T01
Chr8	CDS	65596856	65596989	65596856	ID=MsG0880045862.01.T01:cds;Parent=MsG0880045862.01.T01
Chr8	CDS	65597112	65597262	65597112	ID=MsG0880045862.01.T01:cds;Parent=MsG0880045862.01.T01

Gene Sequence

>MsG0880045862.01.T01

ATGGTGGCGGTTGATGAAAAGAAGAGGGATCGAATGGTGAAAAAAGATGTGATGGAATTTCCACGAAATGATGATCATGGAGTGACTGTTGCATTTTATGGGAGAGAGGTGTATGAGGGTGTTCCTATGACACATTTCTCTCCAAAGTCTCCTTTAAATGTTGTTTTCTCTTCTCTATTTACATATCCTCATTTTTCACAAAGTTATAAACAGAACAAGGCGGTGGAAAATAAATACAAGCTTTTGAATAGTCCAACAAAACAAGCAACCCTAGATGAGACACAATCACAAAAGTTTGCAAGTTCAACTAAAGGGGTAACAGATGGAACATATTCTCGTGGCGAGGCGATATCATCTGCTGTGATTCACGCCGAAGGACTTCGATCACATTTGGAACCAGAATTCCCTAGTTTTGTGAAGTCCTTGCTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGGTTGCCTGTGTCGTTTTGTAAAAGACATTTACCTGATAAGGATACAACTATCACATTAGAAGATGAATATGGTAAAGAATACAAAACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACATTTTAATTTTGGTTCTTTACTCATATCTTTTTTCTTAGGTTTATATAATAAGAGCGGAACTAGAGAATCAAGAGAGTTGCACCAAACAAAAAGTGGGAGGCAAGACTTGCTTCTCCATACTTTTAATTTGTTGTATTATTGTCTATCATGA

Protein sequence

>MsG0880045862.01.T01

MVAVDEKKRDRMVKKDVMEFPRNDDHGVTVAFYGREVYEGVPMTHFSPKSPLNVVFSSLFTYPHFSQSYKQNKAVENKYKLLNSPTKQATLDETQSQKFASSTKGVTDGTYSRGEAISSAVIHAEGLRSHLEPEFPSFVKSLLRSHVASCFWMGLPVSFCKRHLPDKDTTITLEDEYGKEYKTKYIACKTGLSAGWRHFNFGSLLISFFLGLYNKSGTRESRELHQTKSGRQDLLLHTFNLLYYCLS*