Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045977.01.T01 | XP_003608484.1 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.29E-166 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045977.01.T01 | Q9SZE8 | 58.233 | 249 | 79 | 8 | 1 | 233 | 1 | 240 | 2.54E-82 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045977.01.T01 | G7JDY0 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 1.09e-166 | 468 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0880045977.01.T01 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045977.01.T01 | MTR_4g095600 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.78e-170 | 468 |
| MsG0880045977.01.T01 | MTR_5g015880 | 71.008 | 238 | 57 | 5 | 1 | 233 | 1 | 231 | 2.87e-111 | 319 |
| MsG0880045977.01.T01 | MTR_7g007010 | 61.417 | 127 | 46 | 1 | 1 | 124 | 3 | 129 | 7.20e-55 | 178 |
| MsG0880045977.01.T01 | MTR_1g106420 | 63.566 | 129 | 43 | 1 | 1 | 129 | 1 | 125 | 3.80e-52 | 167 |
| MsG0880045977.01.T01 | MTR_6g018270 | 55.319 | 141 | 51 | 1 | 1 | 141 | 3 | 131 | 4.69e-52 | 170 |
| MsG0880045977.01.T01 | MTR_6g453130 | 60.550 | 109 | 41 | 1 | 1 | 107 | 3 | 111 | 2.03e-46 | 154 |
| MsG0880045977.01.T01 | MTR_1g110840 | 55.000 | 120 | 50 | 2 | 1 | 118 | 3 | 120 | 1.21e-45 | 152 |
| MsG0880045977.01.T01 | MTR_6g054150 | 51.667 | 120 | 54 | 3 | 1 | 118 | 3 | 120 | 1.15e-41 | 142 |
| MsG0880045977.01.T01 | MTR_6g054080 | 49.194 | 124 | 59 | 3 | 1 | 122 | 3 | 124 | 1.49e-40 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045977.01.T01 | AT4G37540 | 58.233 | 249 | 79 | 8 | 1 | 233 | 1 | 240 | 2.59e-83 | 248 |
| MsG0880045977.01.T01 | AT3G49940 | 57.540 | 252 | 81 | 7 | 1 | 232 | 1 | 246 | 1.30e-82 | 247 |
| MsG0880045977.01.T01 | AT5G67420 | 54.331 | 254 | 91 | 7 | 1 | 233 | 1 | 250 | 1.26e-75 | 229 |
| MsG0880045977.01.T01 | AT5G67420 | 54.331 | 254 | 91 | 7 | 1 | 233 | 1 | 250 | 1.26e-75 | 229 |
| MsG0880045977.01.T01 | AT1G67100 | 66.667 | 111 | 37 | 0 | 1 | 111 | 3 | 113 | 8.12e-54 | 173 |
| MsG0880045977.01.T01 | AT3G02550 | 49.718 | 177 | 73 | 4 | 1 | 173 | 3 | 167 | 3.80e-52 | 170 |
| MsG0880045977.01.T01 | AT1G68510 | 63.462 | 104 | 38 | 0 | 1 | 104 | 3 | 106 | 2.86e-48 | 159 |
Find 105 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACTCATGTTTCTATTT+TGG | 0.155235 | 8:+67162635 | None:intergenic |
| AAGATTCGCGATCCGAATTT+CGG | 0.249148 | 8:-67162088 | MsG0880045977.01.T01:CDS |
| TTACCTGGTCTCTGTGGTTC+GGG | 0.275915 | 8:+67162457 | None:intergenic |
| GTTGGGGTATAAATAAATAA+AGG | 0.296968 | 8:+67162780 | None:intergenic |
| GAATAGAAAGAAAGTGGTTT+AGG | 0.300622 | 8:+67162719 | None:intergenic |
| GACTTCTTTGGACTGGAAAC+TGG | 0.306937 | 8:-67162252 | MsG0880045977.01.T01:CDS |
| GTAGCGTGGCCTTGAGCTTC+TGG | 0.312181 | 8:+67162538 | None:intergenic |
| ATTTGATATTCCACGGTTAC+AGG | 0.313336 | 8:+67161575 | None:intergenic |
| ACGGTGCTGTTGGACTTCTT+TGG | 0.315165 | 8:-67162264 | MsG0880045977.01.T01:CDS |
| AGAAAGTGGTTTAGGAATAA+TGG | 0.315956 | 8:+67162727 | None:intergenic |
| TTTATCGGAGCTGACACTTC+TGG | 0.333923 | 8:-67162176 | MsG0880045977.01.T01:CDS |
| AGATTCGCGATCCGAATTTC+GGG | 0.347093 | 8:-67162087 | MsG0880045977.01.T01:CDS |
| ACGGTGGCGCTGATGCTATT+TGG | 0.350213 | 8:-67162111 | MsG0880045977.01.T01:CDS |
| ACGACGGCGTGTTTAGAAAC+TGG | 0.362464 | 8:-67161881 | MsG0880045977.01.T01:CDS |
| TCTAGTAATAAGGTGTGTTC+TGG | 0.372758 | 8:-67162049 | MsG0880045977.01.T01:CDS |
| TGGCACGCTTAGGCCTTTAT+CGG | 0.389750 | 8:-67162191 | MsG0880045977.01.T01:CDS |
| ATTACCTGGTCTCTGTGGTT+CGG | 0.410585 | 8:+67162456 | None:intergenic |
| GAGCTCGCCAGCCCGAAATT+CGG | 0.420698 | 8:+67162076 | None:intergenic |
| TTGGGGTATAAATAAATAAA+GGG | 0.424281 | 8:+67162781 | None:intergenic |
| GAGCTCACGATCTAGTAATA+AGG | 0.427686 | 8:-67162059 | MsG0880045977.01.T01:CDS |
| AAGAGAGAATAGAAAGAAAG+TGG | 0.431602 | 8:+67162713 | None:intergenic |
| ATGCGAATTGAGGTGATGTT+GGG | 0.434806 | 8:+67162763 | None:intergenic |
| AGTAAACTATGGTTGAGTTA+AGG | 0.435665 | 8:+67162836 | None:intergenic |
| GTCGATGACGTCGGAGGAAT+CGG | 0.439790 | 8:-67161909 | MsG0880045977.01.T01:CDS |
| AGAAGTGTCAGCTCCGATAA+AGG | 0.449767 | 8:+67162178 | None:intergenic |
| CAGAAAATCCTCATATGAAA+AGG | 0.454062 | 8:+67161813 | None:intergenic |
| AGAAGAAGAGGAGGTGTGGT+TGG | 0.462946 | 8:+67162812 | None:intergenic |
| GTGTTGTGTATTTGATTTAG+AGG | 0.476200 | 8:+67162905 | None:intergenic |
| GCTGTTGGACTTCTTTGGAC+TGG | 0.482667 | 8:-67162259 | MsG0880045977.01.T01:CDS |
| GACGTCATCGACGGTGAACC+AGG | 0.485410 | 8:+67161920 | None:intergenic |
| GCAAAATTCTTTGGTCGAGC+TGG | 0.485866 | 8:-67162505 | MsG0880045977.01.T01:CDS |
| GTGTGGTTGGTAGTAAACTA+TGG | 0.487162 | 8:+67162825 | None:intergenic |
| AATGCGAATTGAGGTGATGT+TGG | 0.491369 | 8:+67162762 | None:intergenic |
| AGGGGAGGAAGGAGAAGAAG+AGG | 0.493231 | 8:+67162800 | None:intergenic |
| AATAGAAACATGAGTTGCAA+TGG | 0.497518 | 8:-67162631 | MsG0880045977.01.T01:exon |
| TTGTGGTGAAAAGAGTAAAA+CGG | 0.498145 | 8:-67161728 | MsG0880045977.01.T01:three_prime_UTR |
| GCAGTGGAGGAACGCCGGCC+TGG | 0.500212 | 8:-67161938 | MsG0880045977.01.T01:CDS |
| GTTTCGATCCATTGCAAACA+AGG | 0.507273 | 8:+67162562 | None:intergenic |
| TCTCTAGAGAAATCCTGAAC+CGG | 0.508750 | 8:+67161675 | None:intergenic |
| CGACGGCGTGTTTAGAAACT+GGG | 0.509803 | 8:-67161880 | MsG0880045977.01.T01:CDS |
| TTCGGGGACGTTGGAAATGA+AGG | 0.510532 | 8:+67162474 | None:intergenic |
| AGTCCAACAGCACCGTTCAC+AGG | 0.514245 | 8:+67162271 | None:intergenic |
| GGGTGCCGAGTTCTTCGAAA+AGG | 0.515559 | 8:-67162610 | MsG0880045977.01.T01:CDS |
| TAAATAAATAAAGGGGAGGA+AGG | 0.524788 | 8:+67162789 | None:intergenic |
| ATTTAATATTTGATATTCCA+CGG | 0.529132 | 8:+67161568 | None:intergenic |
| ATAGAAACATGAGTTGCAAT+GGG | 0.529336 | 8:-67162630 | MsG0880045977.01.T01:exon |
| AAGGAGAAGAAGAGGAGGTG+TGG | 0.529924 | 8:+67162808 | None:intergenic |
| AAATCAAGATTAATCGCCGC+TGG | 0.534004 | 8:+67161989 | None:intergenic |
| GGTGGAGTCACGGTGGTGAT+CGG | 0.543236 | 8:-67161847 | MsG0880045977.01.T01:CDS |
| GGAGGAAGGAGAAGAAGAGG+AGG | 0.543266 | 8:+67162803 | None:intergenic |
| TAGAAACTGGGATTGGAGAT+CGG | 0.545733 | 8:-67161868 | MsG0880045977.01.T01:CDS |
| TAAGGTTAGTTGCAAGCAAG+TGG | 0.549359 | 8:+67162854 | None:intergenic |
| ATTGGAGATCGGTGGAGTCA+CGG | 0.549508 | 8:-67161857 | MsG0880045977.01.T01:CDS |
| AGAGAGTCAGAGAAAGATGA+TGG | 0.551093 | 8:-67161657 | MsG0880045977.01.T01:three_prime_UTR |
| AACCCTGTGAACGGTGCTGT+TGG | 0.557626 | 8:-67162274 | MsG0880045977.01.T01:CDS |
| GCGTGTTTAGAAACTGGGAT+TGG | 0.557756 | 8:-67161875 | MsG0880045977.01.T01:CDS |
| GTGGTTTAGGAATAATGGAA+TGG | 0.559576 | 8:+67162732 | None:intergenic |
| AGCAAAACAGAGAAACGTTA+CGG | 0.559764 | 8:+67161762 | None:intergenic |
| TTCTTCGCGGTGGCACGCTT+AGG | 0.561098 | 8:-67162201 | MsG0880045977.01.T01:CDS |
| AAGGTTAGTTGCAAGCAAGT+GGG | 0.561944 | 8:+67162855 | None:intergenic |
| TGTTGTGTATTTGATTTAGA+GGG | 0.562184 | 8:+67162906 | None:intergenic |
| GTTTGAAGCGTGTGGAAGAA+CGG | 0.563405 | 8:-67162299 | MsG0880045977.01.T01:CDS |
| TCTCTGTGGTTCGGGGACGT+TGG | 0.563762 | 8:+67162465 | None:intergenic |
| TCGCGATCCGAATTTCGGGC+TGG | 0.563771 | 8:-67162083 | MsG0880045977.01.T01:CDS |
| TTAGGAATAATGGAATGGAA+TGG | 0.568834 | 8:+67162737 | None:intergenic |
| TGGAAGCAAACGGAGGAGAT+CGG | 0.569877 | 8:-67162029 | MsG0880045977.01.T01:CDS |
| TGCCACTGATGAAGCTTCTG+AGG | 0.578795 | 8:-67162140 | MsG0880045977.01.T01:CDS |
| TCATCGACGGTGAACCAGGC+CGG | 0.580860 | 8:+67161924 | None:intergenic |
| AGGTGTGTTCTGGAAGCAAA+CGG | 0.583068 | 8:-67162039 | MsG0880045977.01.T01:CDS |
| AGAAGGCAGTGGAGGAACGC+CGG | 0.585660 | 8:-67161943 | MsG0880045977.01.T01:CDS |
| GAAGCTTCTGAGGCGGAAGA+CGG | 0.587046 | 8:-67162130 | MsG0880045977.01.T01:CDS |
| CACTGATGAAGCTTCTGAGG+CGG | 0.596477 | 8:-67162137 | MsG0880045977.01.T01:CDS |
| AAGTGGGGAGAGAGACGTGA+AGG | 0.599979 | 8:+67162871 | None:intergenic |
| TCTCTACTGTTTGAAGCGTG+TGG | 0.600037 | 8:-67162307 | MsG0880045977.01.T01:CDS |
| GTCCAACAGCACCGTTCACA+GGG | 0.600320 | 8:+67162272 | None:intergenic |
| GCTTCATCAGTGGCAGTGAG+AGG | 0.608069 | 8:+67162148 | None:intergenic |
| GGAATGGAGAATGCGAATTG+AGG | 0.608974 | 8:+67162753 | None:intergenic |
| TTTGCTTACAATACTCATTG+TGG | 0.609288 | 8:-67161745 | MsG0880045977.01.T01:three_prime_UTR |
| AGGTTAGTTGCAAGCAAGTG+GGG | 0.609783 | 8:+67162856 | None:intergenic |
| CGCCTCAGAAGCTTCATCAG+TGG | 0.613409 | 8:+67162138 | None:intergenic |
| AGAGAAAGATGATGGTTCGT+CGG | 0.615967 | 8:-67161649 | MsG0880045977.01.T01:three_prime_UTR |
| GTCCCCGAACCACAGAGACC+AGG | 0.617602 | 8:-67162460 | MsG0880045977.01.T01:intron |
| GAGATCGGAGGAGTTTGTGA+AGG | 0.623682 | 8:-67162014 | MsG0880045977.01.T01:CDS |
| GCGGTTGAGACAGTTCTTCG+CGG | 0.626359 | 8:-67162214 | MsG0880045977.01.T01:CDS |
| AAATAATTACCTGGTCTCTG+TGG | 0.626571 | 8:+67162451 | None:intergenic |
| TACCTGGTCTCTGTGGTTCG+GGG | 0.637914 | 8:+67162458 | None:intergenic |
| GCTTCTGAGGCGGAAGACGG+TGG | 0.641101 | 8:-67162127 | MsG0880045977.01.T01:CDS |
| GATTCCTCCGACGTCATCGA+CGG | 0.648497 | 8:+67161911 | None:intergenic |
| TGGGGTATAAATAAATAAAG+GGG | 0.654291 | 8:+67162782 | None:intergenic |
| TGGTTCACCGTCGATGACGT+CGG | 0.655686 | 8:-67161918 | MsG0880045977.01.T01:CDS |
| ATCGAAACACCAGAAGCTCA+AGG | 0.656960 | 8:-67162547 | MsG0880045977.01.T01:CDS |
| AAGCAAACGGAGGAGATCGG+AGG | 0.657755 | 8:-67162026 | MsG0880045977.01.T01:CDS |
| GATGTGTAAACCTGTAACCG+TGG | 0.659840 | 8:-67161585 | MsG0880045977.01.T01:three_prime_UTR |
| GGAGGAATCGGTGACGACGA+CGG | 0.660492 | 8:-67161897 | MsG0880045977.01.T01:CDS |
| CTGGCACGTGTGTCAAGCAG+CGG | 0.661568 | 8:-67162233 | MsG0880045977.01.T01:CDS |
| TGCGAATTGAGGTGATGTTG+GGG | 0.663279 | 8:+67162764 | None:intergenic |
| AGAACGGTTAACCCTGTGAA+CGG | 0.663812 | 8:-67162283 | MsG0880045977.01.T01:CDS |
| GGAGTTTGTGAAGGTTCCAG+CGG | 0.666158 | 8:-67162005 | MsG0880045977.01.T01:CDS |
| GTTGAGACAGTTCTTCGCGG+TGG | 0.669818 | 8:-67162211 | MsG0880045977.01.T01:CDS |
| TTGCTACGAAAACAGTAGCG+TGG | 0.670232 | 8:+67162524 | None:intergenic |
| GGTATAAATAAATAAAGGGG+AGG | 0.672012 | 8:+67162785 | None:intergenic |
| AAACTGGGATTGGAGATCGG+TGG | 0.696279 | 8:-67161865 | MsG0880045977.01.T01:CDS |
| TTCACCGTCGATGACGTCGG+AGG | 0.699966 | 8:-67161915 | MsG0880045977.01.T01:CDS |
| TGTGTTCTGGAAGCAAACGG+AGG | 0.716901 | 8:-67162036 | MsG0880045977.01.T01:CDS |
| GGAGATCGGTGGAGTCACGG+TGG | 0.745894 | 8:-67161854 | MsG0880045977.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATATTTGATATTCCA+CGG | + | Chr8:67162902-67162921 | None:intergenic | 15.0% |
| !! | CAAACTTTCTCTTATATTTA+CGG | + | Chr8:67162057-67162076 | None:intergenic | 20.0% |
| !! | TTGGGGTATAAATAAATAAA+GGG | + | Chr8:67161689-67161708 | None:intergenic | 20.0% |
| ! | CGTAAATATAAGAGAAAGTT+TGG | - | Chr8:67162055-67162074 | MsG0880045977.01.T01:CDS | 25.0% |
| ! | GTTGGGGTATAAATAAATAA+AGG | + | Chr8:67161690-67161709 | None:intergenic | 25.0% |
| ! | TGGGGTATAAATAAATAAAG+GGG | + | Chr8:67161688-67161707 | None:intergenic | 25.0% |
| !! | TGTTGTGTATTTGATTTAGA+GGG | + | Chr8:67161564-67161583 | None:intergenic | 25.0% |
| AAGAGAGAATAGAAAGAAAG+TGG | + | Chr8:67161757-67161776 | None:intergenic | 30.0% | |
| AATAGAAACATGAGTTGCAA+TGG | - | Chr8:67161836-67161855 | MsG0880045977.01.T01:CDS | 30.0% | |
| AGAAAGTGGTTTAGGAATAA+TGG | + | Chr8:67161743-67161762 | None:intergenic | 30.0% | |
| AGACCAGGTAATTATTTAAC+CGG | - | Chr8:67162022-67162041 | MsG0880045977.01.T01:CDS | 30.0% | |
| AGTAAACTATGGTTGAGTTA+AGG | + | Chr8:67161634-67161653 | None:intergenic | 30.0% | |
| ATAGAAACATGAGTTGCAAT+GGG | - | Chr8:67161837-67161856 | MsG0880045977.01.T01:CDS | 30.0% | |
| CAGAAAATCCTCATATGAAA+AGG | + | Chr8:67162657-67162676 | None:intergenic | 30.0% | |
| GAATAGAAAGAAAGTGGTTT+AGG | + | Chr8:67161751-67161770 | None:intergenic | 30.0% | |
| GGTATAAATAAATAAAGGGG+AGG | + | Chr8:67161685-67161704 | None:intergenic | 30.0% | |
| TAAATAAATAAAGGGGAGGA+AGG | + | Chr8:67161681-67161700 | None:intergenic | 30.0% | |
| TTGTGGTGAAAAGAGTAAAA+CGG | - | Chr8:67162739-67162758 | MsG0880045977.01.T01:five_prime_UTR | 30.0% | |
| TTTGCTTACAATACTCATTG+TGG | - | Chr8:67162722-67162741 | MsG0880045977.01.T01:five_prime_UTR | 30.0% | |
| ! | GTGTTGTGTATTTGATTTAG+AGG | + | Chr8:67161565-67161584 | None:intergenic | 30.0% |
| ! | GTTTTCGTAGCAAAATTCTT+TGG | - | Chr8:67161953-67161972 | MsG0880045977.01.T01:CDS | 30.0% |
| ! | TTAGGAATAATGGAATGGAA+TGG | + | Chr8:67161733-67161752 | None:intergenic | 30.0% |
| !! | AGTAAAACGGTTTTGTAGTT+CGG | - | Chr8:67162752-67162771 | MsG0880045977.01.T01:five_prime_UTR | 30.0% |
| !! | TGCAACTCATGTTTCTATTT+TGG | + | Chr8:67161835-67161854 | None:intergenic | 30.0% |
| AAATAATTACCTGGTCTCTG+TGG | + | Chr8:67162019-67162038 | None:intergenic | 35.0% | |
| ACTGCCTTCTGTTGAAAAAT+TGG | + | Chr8:67162514-67162533 | None:intergenic | 35.0% | |
| AGACCGGTTAAATAATTACC+TGG | + | Chr8:67162028-67162047 | None:intergenic | 35.0% | |
| AGCAAAACAGAGAAACGTTA+CGG | + | Chr8:67162708-67162727 | None:intergenic | 35.0% | |
| ATTTGATATTCCACGGTTAC+AGG | + | Chr8:67162895-67162914 | None:intergenic | 35.0% | |
| TCTAGTAATAAGGTGTGTTC+TGG | - | Chr8:67162418-67162437 | MsG0880045977.01.T01:intron | 35.0% | |
| ! | GTGGTTTAGGAATAATGGAA+TGG | + | Chr8:67161738-67161757 | None:intergenic | 35.0% |
| ! | GTTCTCAACCTTTTCATATG+AGG | - | Chr8:67162646-67162665 | MsG0880045977.01.T01:five_prime_UTR | 35.0% |
| !! | AATTTTTCAACAGAAGGCAG+TGG | - | Chr8:67162513-67162532 | MsG0880045977.01.T01:CDS | 35.0% |
| !! | TTTTACGACCTTGTTTGCAA+TGG | - | Chr8:67161897-67161916 | MsG0880045977.01.T01:CDS | 35.0% |
| AAATCAAGATTAATCGCCGC+TGG | + | Chr8:67162481-67162500 | None:intergenic | 40.0% | |
| AAGATTCGCGATCCGAATTT+CGG | - | Chr8:67162379-67162398 | MsG0880045977.01.T01:intron | 40.0% | |
| AATGCGAATTGAGGTGATGT+TGG | + | Chr8:67161708-67161727 | None:intergenic | 40.0% | |
| AGAGAGTCAGAGAAAGATGA+TGG | - | Chr8:67162810-67162829 | MsG0880045977.01.T01:five_prime_UTR | 40.0% | |
| ATGCGAATTGAGGTGATGTT+GGG | + | Chr8:67161707-67161726 | None:intergenic | 40.0% | |
| GAGCTCACGATCTAGTAATA+AGG | - | Chr8:67162408-67162427 | MsG0880045977.01.T01:intron | 40.0% | |
| GTTTCGATCCATTGCAAACA+AGG | + | Chr8:67161908-67161927 | None:intergenic | 40.0% | |
| TAGAAACTGGGATTGGAGAT+CGG | - | Chr8:67162599-67162618 | MsG0880045977.01.T01:CDS | 40.0% | |
| ! | AAGGTTAGTTGCAAGCAAGT+GGG | + | Chr8:67161615-67161634 | None:intergenic | 40.0% |
| ! | AGAGAAAGATGATGGTTCGT+CGG | - | Chr8:67162818-67162837 | MsG0880045977.01.T01:five_prime_UTR | 40.0% |
| ! | GGTGAATTTTCGTGAGTTAC+CGG | - | Chr8:67162773-67162792 | MsG0880045977.01.T01:five_prime_UTR | 40.0% |
| ! | TAAGGTTAGTTGCAAGCAAG+TGG | + | Chr8:67161616-67161635 | None:intergenic | 40.0% |
| ! | TCTCTAGAGAAATCCTGAAC+CGG | + | Chr8:67162795-67162814 | None:intergenic | 40.0% |
| ! | TGCAACCTTTTCGAAGAACT+CGG | + | Chr8:67161865-67161884 | None:intergenic | 40.0% |
| !! | ATATTTACGGACTCTGAGAC+CGG | + | Chr8:67162044-67162063 | None:intergenic | 40.0% |
| !! | GACGCCAATTTTTCAACAGA+AGG | - | Chr8:67162507-67162526 | MsG0880045977.01.T01:CDS | 40.0% |
| !! | GTGTGGTTGGTAGTAAACTA+TGG | + | Chr8:67161645-67161664 | None:intergenic | 40.0% |
| AGAACGGTTAACCCTGTGAA+CGG | - | Chr8:67162184-67162203 | MsG0880045977.01.T01:CDS | 45.0% | |
| AGATTCGCGATCCGAATTTC+GGG | - | Chr8:67162380-67162399 | MsG0880045977.01.T01:intron | 45.0% | |
| ATCGAAACACCAGAAGCTCA+AGG | - | Chr8:67161920-67161939 | MsG0880045977.01.T01:CDS | 45.0% | |
| ATTACCTGGTCTCTGTGGTT+CGG | + | Chr8:67162014-67162033 | None:intergenic | 45.0% | |
| GATGTGTAAACCTGTAACCG+TGG | - | Chr8:67162882-67162901 | MsG0880045977.01.T01:five_prime_UTR | 45.0% | |
| GCAAAATTCTTTGGTCGAGC+TGG | - | Chr8:67161962-67161981 | MsG0880045977.01.T01:CDS | 45.0% | |
| GCGTGTTTAGAAACTGGGAT+TGG | - | Chr8:67162592-67162611 | MsG0880045977.01.T01:CDS | 45.0% | |
| GGAATGGAGAATGCGAATTG+AGG | + | Chr8:67161717-67161736 | None:intergenic | 45.0% | |
| TGCGAATTGAGGTGATGTTG+GGG | + | Chr8:67161706-67161725 | None:intergenic | 45.0% | |
| TTGCTACGAAAACAGTAGCG+TGG | + | Chr8:67161946-67161965 | None:intergenic | 45.0% | |
| TTTATCGGAGCTGACACTTC+TGG | - | Chr8:67162291-67162310 | MsG0880045977.01.T01:CDS | 45.0% | |
| ! | AGGTTAGTTGCAAGCAAGTG+GGG | + | Chr8:67161614-67161633 | None:intergenic | 45.0% |
| ! | GACTTCTTTGGACTGGAAAC+TGG | - | Chr8:67162215-67162234 | MsG0880045977.01.T01:CDS | 45.0% |
| ! | GTTTGAAGCGTGTGGAAGAA+CGG | - | Chr8:67162168-67162187 | MsG0880045977.01.T01:CDS | 45.0% |
| ! | TCTCTACTGTTTGAAGCGTG+TGG | - | Chr8:67162160-67162179 | MsG0880045977.01.T01:CDS | 45.0% |
| ! | TTTTCAACAGAAGGCAGTGG+AGG | - | Chr8:67162516-67162535 | MsG0880045977.01.T01:CDS | 45.0% |
| !! | AGAAGTGTCAGCTCCGATAA+AGG | + | Chr8:67162292-67162311 | None:intergenic | 45.0% |
| !! | AGGTGTGTTCTGGAAGCAAA+CGG | - | Chr8:67162428-67162447 | MsG0880045977.01.T01:intron | 45.0% |
| !!! | TTTTCGTGAGTTACCGGTTC+AGG | - | Chr8:67162779-67162798 | MsG0880045977.01.T01:five_prime_UTR | 45.0% |
| AAACTGGGATTGGAGATCGG+TGG | - | Chr8:67162602-67162621 | MsG0880045977.01.T01:CDS | 50.0% | |
| AAGGAGAAGAAGAGGAGGTG+TGG | + | Chr8:67161662-67161681 | None:intergenic | 50.0% | |
| ACGACGGCGTGTTTAGAAAC+TGG | - | Chr8:67162586-67162605 | MsG0880045977.01.T01:CDS | 50.0% | |
| ATTGGAGATCGGTGGAGTCA+CGG | - | Chr8:67162610-67162629 | MsG0880045977.01.T01:CDS | 50.0% | |
| CGACGGCGTGTTTAGAAACT+GGG | - | Chr8:67162587-67162606 | MsG0880045977.01.T01:CDS | 50.0% | |
| GAGATCGGAGGAGTTTGTGA+AGG | - | Chr8:67162453-67162472 | MsG0880045977.01.T01:intron | 50.0% | |
| GCTGTTGGACTTCTTTGGAC+TGG | - | Chr8:67162208-67162227 | MsG0880045977.01.T01:CDS | 50.0% | |
| GGAGTTTGTGAAGGTTCCAG+CGG | - | Chr8:67162462-67162481 | MsG0880045977.01.T01:CDS | 50.0% | |
| TGCCACTGATGAAGCTTCTG+AGG | - | Chr8:67162327-67162346 | MsG0880045977.01.T01:intron | 50.0% | |
| TGGAAGCAAACGGAGGAGAT+CGG | - | Chr8:67162438-67162457 | MsG0880045977.01.T01:intron | 50.0% | |
| TGGCACGCTTAGGCCTTTAT+CGG | - | Chr8:67162276-67162295 | MsG0880045977.01.T01:CDS | 50.0% | |
| TTACCTGGTCTCTGTGGTTC+GGG | + | Chr8:67162013-67162032 | None:intergenic | 50.0% | |
| TTCGGGGACGTTGGAAATGA+AGG | + | Chr8:67161996-67162015 | None:intergenic | 50.0% | |
| ! | AGAAGAAGAGGAGGTGTGGT+TGG | + | Chr8:67161658-67161677 | None:intergenic | 50.0% |
| ! | CACTGATGAAGCTTCTGAGG+CGG | - | Chr8:67162330-67162349 | MsG0880045977.01.T01:intron | 50.0% |
| !! | ACGGTGCTGTTGGACTTCTT+TGG | - | Chr8:67162203-67162222 | MsG0880045977.01.T01:CDS | 50.0% |
| !! | TGTGTTCTGGAAGCAAACGG+AGG | - | Chr8:67162431-67162450 | MsG0880045977.01.T01:intron | 50.0% |
| AAGCAAACGGAGGAGATCGG+AGG | - | Chr8:67162441-67162460 | MsG0880045977.01.T01:intron | 55.0% | |
| AAGTGGGGAGAGAGACGTGA+AGG | + | Chr8:67161599-67161618 | None:intergenic | 55.0% | |
| AGGGGAGGAAGGAGAAGAAG+AGG | + | Chr8:67161670-67161689 | None:intergenic | 55.0% | |
| AGTCCAACAGCACCGTTCAC+AGG | + | Chr8:67162199-67162218 | None:intergenic | 55.0% | |
| CGCCTCAGAAGCTTCATCAG+TGG | + | Chr8:67162332-67162351 | None:intergenic | 55.0% | |
| GATTCCTCCGACGTCATCGA+CGG | + | Chr8:67162559-67162578 | None:intergenic | 55.0% | |
| GCGGTTGAGACAGTTCTTCG+CGG | - | Chr8:67162253-67162272 | MsG0880045977.01.T01:CDS | 55.0% | |
| GCTTCATCAGTGGCAGTGAG+AGG | + | Chr8:67162322-67162341 | None:intergenic | 55.0% | |
| GGAGGAAGGAGAAGAAGAGG+AGG | + | Chr8:67161667-67161686 | None:intergenic | 55.0% | |
| GTCCAACAGCACCGTTCACA+GGG | + | Chr8:67162198-67162217 | None:intergenic | 55.0% | |
| GTCGATGACGTCGGAGGAAT+CGG | - | Chr8:67162558-67162577 | MsG0880045977.01.T01:CDS | 55.0% | |
| GTTGAGACAGTTCTTCGCGG+TGG | - | Chr8:67162256-67162275 | MsG0880045977.01.T01:CDS | 55.0% | |
| TACCTGGTCTCTGTGGTTCG+GGG | + | Chr8:67162012-67162031 | None:intergenic | 55.0% | |
| TGGTTCACCGTCGATGACGT+CGG | - | Chr8:67162549-67162568 | MsG0880045977.01.T01:CDS | 55.0% | |
| !! | AACCCTGTGAACGGTGCTGT+TGG | - | Chr8:67162193-67162212 | MsG0880045977.01.T01:CDS | 55.0% |
| !! | ACGGTGGCGCTGATGCTATT+TGG | - | Chr8:67162356-67162375 | MsG0880045977.01.T01:intron | 55.0% |
| !! | GAAGCTTCTGAGGCGGAAGA+CGG | - | Chr8:67162337-67162356 | MsG0880045977.01.T01:intron | 55.0% |
| !! | GGGTGCCGAGTTCTTCGAAA+AGG | - | Chr8:67161857-67161876 | MsG0880045977.01.T01:CDS | 55.0% |
| AGAAGGCAGTGGAGGAACGC+CGG | - | Chr8:67162524-67162543 | MsG0880045977.01.T01:CDS | 60.0% | |
| CTGGCACGTGTGTCAAGCAG+CGG | - | Chr8:67162234-67162253 | MsG0880045977.01.T01:CDS | 60.0% | |
| GACGTCATCGACGGTGAACC+AGG | + | Chr8:67162550-67162569 | None:intergenic | 60.0% | |
| GAGCTCGCCAGCCCGAAATT+CGG | + | Chr8:67162394-67162413 | None:intergenic | 60.0% | |
| GGAGGAATCGGTGACGACGA+CGG | - | Chr8:67162570-67162589 | MsG0880045977.01.T01:CDS | 60.0% | |
| GGTGGAGTCACGGTGGTGAT+CGG | - | Chr8:67162620-67162639 | MsG0880045977.01.T01:CDS | 60.0% | |
| TCATCGACGGTGAACCAGGC+CGG | + | Chr8:67162546-67162565 | None:intergenic | 60.0% | |
| TCGCGATCCGAATTTCGGGC+TGG | - | Chr8:67162384-67162403 | MsG0880045977.01.T01:intron | 60.0% | |
| TTCACCGTCGATGACGTCGG+AGG | - | Chr8:67162552-67162571 | MsG0880045977.01.T01:CDS | 60.0% | |
| TTCTTCGCGGTGGCACGCTT+AGG | - | Chr8:67162266-67162285 | MsG0880045977.01.T01:CDS | 60.0% | |
| ! | GTAGCGTGGCCTTGAGCTTC+TGG | + | Chr8:67161932-67161951 | None:intergenic | 60.0% |
| ! | TCTCTGTGGTTCGGGGACGT+TGG | + | Chr8:67162005-67162024 | None:intergenic | 60.0% |
| GGAGATCGGTGGAGTCACGG+TGG | - | Chr8:67162613-67162632 | MsG0880045977.01.T01:CDS | 65.0% | |
| GTCCCCGAACCACAGAGACC+AGG | - | Chr8:67162007-67162026 | MsG0880045977.01.T01:CDS | 65.0% | |
| !! | GCTTCTGAGGCGGAAGACGG+TGG | - | Chr8:67162340-67162359 | MsG0880045977.01.T01:intron | 65.0% |
| GCAGTGGAGGAACGCCGGCC+TGG | - | Chr8:67162529-67162548 | MsG0880045977.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 67161541 | 67162948 | 67161541 | ID=MsG0880045977.01;Name=MsG0880045977.01 |
| Chr8 | mRNA | 67161541 | 67162948 | 67161541 | ID=MsG0880045977.01.T01;Parent=MsG0880045977.01;Name=MsG0880045977.01.T01;_AED=0.48;_eAED=0.48;_QI=304|1|1|1|1|1|2|282|233 |
| Chr8 | exon | 67161541 | 67162340 | 67161541 | ID=MsG0880045977.01.T01:exon:12705;Parent=MsG0880045977.01.T01 |
| Chr8 | exon | 67162461 | 67162948 | 67162461 | ID=MsG0880045977.01.T01:exon:12704;Parent=MsG0880045977.01.T01 |
| Chr8 | five_prime_UTR | 67162645 | 67162948 | 67162645 | ID=MsG0880045977.01.T01:five_prime_utr;Parent=MsG0880045977.01.T01 |
| Chr8 | CDS | 67162461 | 67162644 | 67162461 | ID=MsG0880045977.01.T01:cds;Parent=MsG0880045977.01.T01 |
| Chr8 | CDS | 67161823 | 67162340 | 67161823 | ID=MsG0880045977.01.T01:cds;Parent=MsG0880045977.01.T01 |
| Chr8 | three_prime_UTR | 67161541 | 67161822 | 67161541 | ID=MsG0880045977.01.T01:three_prime_utr;Parent=MsG0880045977.01.T01 |
| Gene Sequence |
| Protein sequence |
