AlfalfaGEDB | MsG0880046412.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046412.01

KEGG: -
GO: GO:0003677 GO:0003700 GO:0006355 GO:0043565
PFAM: PF00046 PF02183

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046412.01.T01	XP_003608986.1	95.562	338	10	3	1	334	1	337	0	644

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046412.01.T01	Q02283	45.205	219	88	6	52	267	32	221	8.97E-44	154

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046412.01.T01	B7FK22	95.562	338	10	3	1	334	1	337	0.0	644

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TFs/TRs:

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Gene ID	Type	Classification
MsG0880046412.01.T01	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046412.01.T01	MTR_4g107650	95.562	338	10	3	1	334	1	337	0.0	644
MsG0880046412.01.T01	MTR_5g038280	46.802	344	151	11	1	332	1	324	9.47e-83	254
MsG0880046412.01.T01	MTR_8g469430	41.411	326	128	10	19	334	14	286	1.77e-56	185
MsG0880046412.01.T01	MTR_6g007647	43.952	248	103	7	31	275	14	228	1.29e-47	162
MsG0880046412.01.T01	MTR_6g007647	48.108	185	71	3	94	275	32	194	7.67e-45	154
MsG0880046412.01.T01	MTR_8g468210	48.276	174	61	5	28	187	11	169	1.27e-38	139
MsG0880046412.01.T01	MTR_5g039000	57.937	126	48	2	66	187	45	169	5.68e-38	137
MsG0880046412.01.T01	MTR_6g011610	45.833	168	75	4	48	204	50	212	6.20e-37	134
MsG0880046412.01.T01	MTR_3g086790	58.559	111	46	0	86	196	51	161	3.48e-36	132
MsG0880046412.01.T01	MTR_6g011610	43.750	176	81	3	43	204	22	193	7.33e-36	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046412.01.T01	AT3G01470	45.205	219	88	6	52	267	32	221	9.14e-45	154
MsG0880046412.01.T01	AT4G40060	41.379	261	132	8	44	300	4	247	3.21e-40	143
MsG0880046412.01.T01	AT3G01220	59.130	115	43	1	94	208	86	196	2.81e-36	132
MsG0880046412.01.T01	AT2G22430	63.636	99	36	0	93	191	60	158	3.81e-36	133
MsG0880046412.01.T01	AT1G69780	47.590	166	62	4	44	199	44	194	5.58e-36	132
MsG0880046412.01.T01	AT5G15150	65.957	94	32	0	94	187	114	207	6.18e-36	132
MsG0880046412.01.T01	AT5G65310	62.626	99	37	0	93	191	52	150	2.22e-35	130
MsG0880046412.01.T01	AT5G65310	62.626	99	37	0	93	191	70	168	3.08e-35	130
MsG0880046412.01.T01	AT1G27045	44.134	179	80	4	23	200	14	173	3.71e-33	122
MsG0880046412.01.T01	AT1G26960	48.322	149	64	4	43	190	30	166	1.56e-31	119

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Find 107 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAATCAAACAAGAGA+TGG	0.506055	8:+73116154	None:intergenic
AAAGTCAGAGAATGGCAAGT+TGG	0.554287	8:-73113924	MsG0880046412.01.T01:three_prime_UTR
AACACTCCATCAGTGTAACG+TGG	0.635850	8:+73114269	None:intergenic
AACCAAATAGCAACTTGCCG+TGG	0.641928	8:+73115021	None:intergenic
AAGACCTTGGTTTGCAGCCA+CGG	0.500948	8:-73115038	MsG0880046412.01.T01:CDS
AAGATCATCATCAAGCTCTT+TGG	0.376736	8:-73114082	MsG0880046412.01.T01:CDS
AAGATGTTCAAGGAAGGAAA+AGG	0.536023	8:-73115239	MsG0880046412.01.T01:CDS
AAGGAAGGAAAAGGTGCAAC+AGG	0.438515	8:-73115230	MsG0880046412.01.T01:CDS
AATACAAAGTTTCAGAGGGA+GGG	0.565317	8:+73116125	None:intergenic
AATCAACAACAAACTCCTCG+TGG	0.662080	8:-73115795	MsG0880046412.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAATCAAACAAGAGA+TGG	+	Chr8:73113872-73113891	None:intergenic	30.0%
ACCAAAGGTTTATTCATTGT+TGG	+	Chr8:73115619-73115638	None:intergenic	30.0%
ACCAACAATGAATAAACCTT+TGG	-	Chr8:73115615-73115634	MsG0880046412.01.T01:intron	30.0%
ACTCAATACAAAGTTTCAGA+GGG	+	Chr8:73113905-73113924	None:intergenic	30.0%
ATCAAGTTATGGATTTCAAG+AGG	-	Chr8:73115918-73115937	MsG0880046412.01.T01:five_prime_UTR	30.0%
ATCCAAATTGTCAATTGTTG+AGG	-	Chr8:73115663-73115682	MsG0880046412.01.T01:intron	30.0%
ATTTCATTTCATACCCGAAA+TGG	-	Chr8:73116126-73116145	MsG0880046412.01.T01:five_prime_UTR	30.0%
TCTTTGTGATGTTTCAATAC+AGG	-	Chr8:73115501-73115520	MsG0880046412.01.T01:intron	30.0%
TGTGGTTCACATAAAACTAT+TGG	-	Chr8:73115451-73115470	MsG0880046412.01.T01:intron	30.0%
TTGAAGATATTAGTTCAGCA+AGG	-	Chr8:73115707-73115726	MsG0880046412.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	73113790	73116255	73113790	ID=MsG0880046412.01;Name=MsG0880046412.01
Chr8	mRNA	73113790	73116255	73113790	ID=MsG0880046412.01.T01;Parent=MsG0880046412.01;Name=MsG0880046412.01.T01;_AED=0.48;_eAED=0.48;_QI=366\|1\|1\|1\|0.5\|0.33\|3\|277\|334
Chr8	exon	73113790	73114522	73113790	ID=MsG0880046412.01.T01:exon:5767;Parent=MsG0880046412.01.T01
Chr8	exon	73114891	73115285	73114891	ID=MsG0880046412.01.T01:exon:5766;Parent=MsG0880046412.01.T01
Chr8	exon	73115736	73116255	73115736	ID=MsG0880046412.01.T01:exon:5765;Parent=MsG0880046412.01.T01
Chr8	five_prime_UTR	73115890	73116255	73115890	ID=MsG0880046412.01.T01:five_prime_utr;Parent=MsG0880046412.01.T01
Chr8	CDS	73115736	73115889	73115736	ID=MsG0880046412.01.T01:cds;Parent=MsG0880046412.01.T01
Chr8	CDS	73114891	73115285	73114891	ID=MsG0880046412.01.T01:cds;Parent=MsG0880046412.01.T01
Chr8	CDS	73114067	73114522	73114067	ID=MsG0880046412.01.T01:cds;Parent=MsG0880046412.01.T01
Chr8	three_prime_UTR	73113790	73114066	73113790	ID=MsG0880046412.01.T01:three_prime_utr;Parent=MsG0880046412.01.T01

Gene Sequence

>MsG0880046412.01.T01

ATGGCGGGTGGGAGAGTTTTTTCAAATGGTCCTGCAAATATTTCAAATATAAATATGAATATTTTGCTTCAGAATCAACAACAAACTCCTCGTGGAAACTCTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTGCTTCTTTCTTTGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAAGGAAAAGGTGCAACAGGTCTTTCTTCGGAGGATTTGATCTTGACGAAAACGGCGAGGATGAGATGGATGAGTACTTTCATCAATCCGAGAAGAAACGGCGTCTCTCAGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAAGAGGACAACAAGCTTGAACCAGAGAGGAAAACCAAGCTAGCTAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGTCGTGCAAGATGGAAGACCAAACAGCTTGAGAAGGATTATGATTCTCTTAATGATAGTTATGAGTCTCTTAAGACAGATTATGACAACCTTCTCAAAGAGAAAGATAGGTTACAATCTGAGGTAGCAAGCCTAACTGAAAAGGTACTTGCAAGAGAGAAACAAGAGGGAAAATTCAAACAAGGTGAAAGTGAAACAAAGGAATTCTTGCAGGAACCAACAATGAATAAACCTTTGGTTGATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAACAATAACAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACTGATGGAGTGTTAGAGACAGGTGATTCTTCCTATGTATTTGAACATGAATATCAATCGGACCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTACATCTTTACAAAACTTGAAGATGTGAATTACTCCGACCCGCCACATGATAATTCATCAAGTTATGGATTTCAAGAGGAAGATCATCATCAAGCTCTTTGGCCTTGGTCTTATTAA

Protein sequence

>MsG0880046412.01.T01

MAGGRVFSNGPANISNINMNILLQNQQQTPRGNSSQQPLDSLFLSSSASFFGSRSMVSFEDVQGRKRCNRSFFGGFDLDENGEDEMDEYFHQSEKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDSYESLKTDYDNLLKEKDRLQSEVASLTEKVLAREKQEGKFKQGESETKEFLQEPTMNKPLVDSVSEGEGSKLSIVEASNNNNKLEDISSARSDILDCDSPRYTDGVLETGDSSYVFEHEYQSDLSQDEEDNLLPPYIFTKLEDVNYSDPPHDNSSSYGFQEEDHHQALWPWSY*