AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046412.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046412.01.T01 MTR_4g107650 95.562 338 10 3 1 334 1 337 0.0 644
MsG0880046412.01.T01 MTR_5g038280 46.802 344 151 11 1 332 1 324 9.47e-83 254
MsG0880046412.01.T01 MTR_8g469430 41.411 326 128 10 19 334 14 286 1.77e-56 185
MsG0880046412.01.T01 MTR_6g007647 43.952 248 103 7 31 275 14 228 1.29e-47 162
MsG0880046412.01.T01 MTR_6g007647 48.108 185 71 3 94 275 32 194 7.67e-45 154
MsG0880046412.01.T01 MTR_8g468210 48.276 174 61 5 28 187 11 169 1.27e-38 139
MsG0880046412.01.T01 MTR_5g039000 57.937 126 48 2 66 187 45 169 5.68e-38 137
MsG0880046412.01.T01 MTR_6g011610 45.833 168 75 4 48 204 50 212 6.20e-37 134
MsG0880046412.01.T01 MTR_3g086790 58.559 111 46 0 86 196 51 161 3.48e-36 132
MsG0880046412.01.T01 MTR_6g011610 43.750 176 81 3 43 204 22 193 7.33e-36 130
MsG0880046412.01.T01 MTR_3g080100 62.857 105 39 0 94 198 19 123 1.08e-35 129
MsG0880046412.01.T01 MTR_3g080100 62.857 105 39 0 94 198 58 162 2.48e-35 129
MsG0880046412.01.T01 MTR_8g089895 60.784 102 40 0 94 195 53 154 6.75e-35 129
MsG0880046412.01.T01 MTR_7g010020 43.684 190 93 6 81 257 64 252 4.56e-33 124
MsG0880046412.01.T01 MTR_7g103340 48.148 135 50 4 94 228 62 176 9.50e-30 114
MsG0880046412.01.T01 MTR_1g061660 53.982 113 42 3 84 196 49 151 9.97e-29 111
MsG0880046412.01.T01 MTR_3g092150 55.789 95 42 0 97 191 40 134 3.53e-28 110
MsG0880046412.01.T01 MTR_8g026960 47.778 90 47 0 102 191 41 130 4.22e-24 99.0
MsG0880046412.01.T01 MTR_5g019680 45.872 109 52 1 95 203 53 154 1.38e-21 91.3
MsG0880046412.01.T01 MTR_5g019650 49.091 110 54 2 95 203 53 161 3.71e-21 90.5
MsG0880046412.01.T01 MTR_4g100550 50.926 108 44 2 80 187 107 205 9.85e-21 90.9
MsG0880046412.01.T01 MTR_5g013010 43.448 145 61 4 45 187 96 221 2.45e-19 87.0
MsG0880046412.01.T01 MTR_1g054285 46.341 123 55 3 69 187 124 239 1.70e-18 84.7
MsG0880046412.01.T01 MTR_7g093430 37.931 174 93 5 11 182 87 247 5.35e-18 83.2
MsG0880046412.01.T01 MTR_2g061030 50.000 90 45 0 93 182 198 287 5.67e-18 84.0
MsG0880046412.01.T01 MTR_8g006705 51.613 93 38 2 95 187 146 231 2.73e-17 81.6
MsG0880046412.01.T01 MTR_4g097600 46.154 104 49 1 84 187 116 212 2.89e-17 80.9
MsG0880046412.01.T01 MTR_1g017090 36.905 168 78 4 26 182 67 217 1.46e-16 79.0
MsG0880046412.01.T01 MTR_5g014890 44.792 96 53 0 87 182 115 210 8.74e-16 76.6
MsG0880046412.01.T01 MTR_4g084750 45.161 93 44 1 95 187 65 150 2.39e-14 71.2
MsG0880046412.01.T01 MTR_5g013010 44.231 104 44 3 45 146 96 187 2.67e-14 71.2
MsG0880046412.01.T01 MTR_3g103590 48.611 72 37 0 95 166 145 216 2.69e-14 72.8
MsG0880046412.01.T01 MTR_4g126900 44.444 90 43 1 98 187 91 173 7.66e-14 70.1
MsG0880046412.01.T01 MTR_2g038625 40.909 88 52 0 95 182 82 169 2.20e-11 63.2
MsG0880046412.01.T01 MTR_2g038580 40.909 88 52 0 95 182 82 169 2.20e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046412.01.T01 AT3G01470 45.205 219 88 6 52 267 32 221 9.14e-45 154
MsG0880046412.01.T01 AT4G40060 41.379 261 132 8 44 300 4 247 3.21e-40 143
MsG0880046412.01.T01 AT3G01220 59.130 115 43 1 94 208 86 196 2.81e-36 132
MsG0880046412.01.T01 AT2G22430 63.636 99 36 0 93 191 60 158 3.81e-36 133
MsG0880046412.01.T01 AT1G69780 47.590 166 62 4 44 199 44 194 5.58e-36 132
MsG0880046412.01.T01 AT5G15150 65.957 94 32 0 94 187 114 207 6.18e-36 132
MsG0880046412.01.T01 AT5G65310 62.626 99 37 0 93 191 52 150 2.22e-35 130
MsG0880046412.01.T01 AT5G65310 62.626 99 37 0 93 191 70 168 3.08e-35 130
MsG0880046412.01.T01 AT1G27045 44.134 179 80 4 23 200 14 173 3.71e-33 122
MsG0880046412.01.T01 AT1G26960 48.322 149 64 4 43 190 30 166 1.56e-31 119
MsG0880046412.01.T01 AT1G27045 45.181 166 71 4 23 187 14 160 3.38e-31 118
MsG0880046412.01.T01 AT1G27045 53.846 117 53 1 83 198 12 128 3.37e-30 114
MsG0880046412.01.T01 AT1G27045 53.846 117 53 1 83 198 12 128 3.37e-30 114
MsG0880046412.01.T01 AT1G27045 53.846 117 53 1 83 198 4 120 3.76e-30 113
MsG0880046412.01.T01 AT2G18550 48.120 133 54 3 65 197 39 156 4.36e-28 109
MsG0880046412.01.T01 AT2G46680 48.148 108 56 0 91 198 28 135 1.31e-27 108
MsG0880046412.01.T01 AT3G61890 51.485 101 48 1 98 198 33 132 5.51e-27 106
MsG0880046412.01.T01 AT2G46680 52.688 93 44 0 91 183 28 120 4.25e-26 104
MsG0880046412.01.T01 AT4G36740 50.485 103 44 1 95 197 56 151 1.90e-25 102
MsG0880046412.01.T01 AT2G36610 38.764 178 79 7 45 203 12 178 2.05e-25 101
MsG0880046412.01.T01 AT4G36740 50.485 103 44 1 95 197 55 150 2.10e-25 102
MsG0880046412.01.T01 AT5G03790 45.528 123 54 3 95 211 77 192 2.79e-25 102
MsG0880046412.01.T01 AT5G03790 53.763 93 36 1 95 187 77 162 4.19e-25 100
MsG0880046412.01.T01 AT5G66700 48.454 97 43 1 95 191 71 160 1.67e-22 94.4
MsG0880046412.01.T01 AT5G06710 48.624 109 40 2 79 187 183 275 1.49e-18 85.5
MsG0880046412.01.T01 AT3G60390 46.281 121 54 3 67 187 138 247 2.24e-18 84.7
MsG0880046412.01.T01 AT5G53980 46.667 90 48 0 95 184 11 100 7.40e-18 79.7
MsG0880046412.01.T01 AT5G47370 48.077 104 47 1 84 187 119 215 8.31e-18 82.8
MsG0880046412.01.T01 AT2G44910 51.613 93 38 1 95 187 163 248 1.45e-17 82.4
MsG0880046412.01.T01 AT4G16780 45.133 113 47 2 75 187 117 214 2.24e-17 81.3
MsG0880046412.01.T01 AT4G17460 47.619 105 47 2 84 187 123 220 4.04e-17 80.5
MsG0880046412.01.T01 AT2G22800 43.750 96 54 0 87 182 105 200 1.88e-15 75.9
MsG0880046412.01.T01 AT2G01430 42.478 113 51 3 80 187 121 224 6.43e-15 74.3
MsG0880046412.01.T01 AT4G37790 43.810 105 52 2 83 187 114 211 1.84e-14 73.2
MsG0880046412.01.T01 AT5G06710 54.412 68 22 1 79 146 183 241 1.57e-13 70.1
MsG0880046412.01.T01 AT2G01430 46.575 73 32 2 80 147 121 191 5.72e-12 64.7
MsG0880046412.01.T01 AT1G70920 43.011 93 46 1 95 187 69 154 2.22e-11 62.8
MsG0880046412.01.T01 AT1G70920 43.011 93 46 1 95 187 39 124 2.74e-11 62.0

Find 107 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCTGCTTCTTTCTT+TGG 0.167637 8:-73115735 MsG0880046412.01.T01:intron
CTCACTCACTTTGCACAAAA+AGG 0.203350 8:+73113972 None:intergenic
TAATTTACAATGCAACAAAA+TGG 0.203752 8:+73113835 None:intergenic
AGCCTCAACAATTGACAATT+TGG 0.241624 8:+73114358 None:intergenic
TTGTAAATTAATGAAACTTT+TGG 0.268912 8:-73113822 MsG0880046412.01.T01:three_prime_UTR
TTGAATAGGTTCAAGATCTA+TGG 0.281332 8:-73115271 MsG0880046412.01.T01:intron
TACAAGAGCCACACCCATTT+CGG 0.288630 8:+73113883 None:intergenic
TGAGAGACGCCGTTTCTTCT+CGG 0.306253 8:+73115140 None:intergenic
ATTTCATTTCATACCCGAAA+TGG 0.312835 8:-73113897 MsG0880046412.01.T01:three_prime_UTR
TTGTAGCTATATAGCTATTA+TGG 0.322660 8:-73115953 MsG0880046412.01.T01:five_prime_UTR
ATCATCAAGCTCTTTGGCCT+TGG 0.324405 8:-73114076 MsG0880046412.01.T01:CDS
ACAAGAGCCACACCCATTTC+GGG 0.325705 8:+73113884 None:intergenic
TTTATATTTGAAATATTTGC+AGG 0.339240 8:+73115837 None:intergenic
AGCCACGGCAAGTTGCTATT+TGG 0.343826 8:-73115023 MsG0880046412.01.T01:CDS
TTCAGCAAGGAGTGACATAT+TGG 0.347228 8:-73114303 MsG0880046412.01.T01:CDS
TGTCTTCTTCATCTTGTGAT+AGG 0.364063 8:+73114198 None:intergenic
CATGATAATTCATCAAGTTA+TGG 0.374938 8:-73114116 MsG0880046412.01.T01:CDS
AAGATCATCATCAAGCTCTT+TGG 0.376736 8:-73114082 MsG0880046412.01.T01:CDS
ACCAAGGTCTTTAGCTAGCT+TGG 0.382164 8:+73115050 None:intergenic
AATTTACAATGCAACAAAAT+GGG 0.386090 8:+73113836 None:intergenic
GGATTTGATCTTGACGAAAA+CGG 0.405214 8:-73115195 MsG0880046412.01.T01:CDS
TATAAGATAAAGTTTAACTT+TGG 0.411952 8:-73115921 MsG0880046412.01.T01:five_prime_UTR
ACCAAAGGTTTATTCATTGT+TGG 0.412212 8:+73114407 None:intergenic
ATAATCCTTCTCAAGCTGTT+TGG 0.413395 8:+73114972 None:intergenic
TGAAACAAAGGAATTCTTGC+AGG 0.414573 8:-73114432 MsG0880046412.01.T01:CDS
TTGTGATAGATAAATATATA+TGG 0.415943 8:-73115886 MsG0880046412.01.T01:exon
GAAATGGGTGTGGCTCTTGT+AGG 0.419023 8:-73113881 MsG0880046412.01.T01:three_prime_UTR
GATTAAAGATCTAAGACTTA+TGG 0.420684 8:+73115993 None:intergenic
GGAGGTGTGGGAACAACGGC+AGG 0.421932 8:+73116057 None:intergenic
ACCAACAATGAATAAACCTT+TGG 0.422093 8:-73114408 MsG0880046412.01.T01:CDS
AAGGAAGGAAAAGGTGCAAC+AGG 0.438515 8:-73115230 MsG0880046412.01.T01:CDS
TGATTTCAGTGATGTGTGAT+TGG 0.442504 8:+73116035 None:intergenic
ACCTTCTCAAAGAGAAAGAT+AGG 0.463134 8:-73114903 MsG0880046412.01.T01:CDS
AGAAAGAAGCAGAAGAAGAA+AGG 0.470780 8:+73115739 None:intergenic
TTTCATTTCATACCCGAAAT+GGG 0.470838 8:-73113896 MsG0880046412.01.T01:three_prime_UTR
CGAAAACGGCGAGGATGAGA+TGG 0.475286 8:-73115181 MsG0880046412.01.T01:CDS
TATATAGCTACAAGCTAGCT+AGG 0.478244 8:+73115963 None:intergenic
AGACTTATGGCGGAAGAAGC+TGG 0.487077 8:+73116006 None:intergenic
AGGTGCAACAGGTCTTTCTT+CGG 0.489691 8:-73115219 MsG0880046412.01.T01:CDS
TTTGGTTGATTCAGTTTCTG+AGG 0.492605 8:-73114390 MsG0880046412.01.T01:CDS
GGTAGCAAGCCTAACTGAAA+AGG 0.493946 8:-73114501 MsG0880046412.01.T01:CDS
ACCTATCTTTCTCTTTGAGA+AGG 0.495244 8:+73114902 None:intergenic
AAGACCTTGGTTTGCAGCCA+CGG 0.500948 8:-73115038 MsG0880046412.01.T01:CDS
AAAGAGAATCAAACAAGAGA+TGG 0.506055 8:+73116154 None:intergenic
ATCCAAATTGTCAATTGTTG+AGG 0.508800 8:-73114360 MsG0880046412.01.T01:CDS
TGGCTCTTGTAGGATAGAAA+TGG 0.509467 8:-73113871 MsG0880046412.01.T01:three_prime_UTR
TTCATCAATCCGAGAAGAAA+CGG 0.510950 8:-73115149 MsG0880046412.01.T01:CDS
TTGGTTGATTCAGTTTCTGA+GGG 0.528561 8:-73114389 MsG0880046412.01.T01:CDS
GATTTCAGTGATGTGTGATT+GGG 0.528729 8:+73116036 None:intergenic
TGATGTGTGATTGGGAGGTG+TGG 0.530656 8:+73116044 None:intergenic
TCTTGAGAAAAGCTTTGAAG+AGG 0.530902 8:-73115100 MsG0880046412.01.T01:CDS
TTCAGTGATGTGTGATTGGG+AGG 0.530989 8:+73116039 None:intergenic
GAAAGATAGGTTACAATCTG+AGG 0.533848 8:-73114890 MsG0880046412.01.T01:intron
ATACAAAGTTTCAGAGGGAG+GGG 0.534755 8:+73116126 None:intergenic
AAGATGTTCAAGGAAGGAAA+AGG 0.536023 8:-73115239 MsG0880046412.01.T01:CDS
TTCAAAACCGTCGTGCAAGA+TGG 0.537462 8:-73114999 MsG0880046412.01.T01:CDS
TTTCATACCCGAAATGGGTG+TGG 0.538493 8:-73113891 MsG0880046412.01.T01:three_prime_UTR
CCATTACTCCGATCAAAAGA+AGG 0.543323 8:+73116086 None:intergenic
ATTTGAACATGAATATCAAT+CGG 0.545738 8:-73114222 MsG0880046412.01.T01:CDS
ACCAAGCTAGCTAAAGACCT+TGG 0.547629 8:-73115051 MsG0880046412.01.T01:CDS
GATTCAGTTTCTGAGGGTGA+AGG 0.550989 8:-73114383 MsG0880046412.01.T01:CDS
ATTTACAATGCAACAAAATG+GGG 0.551950 8:+73113837 None:intergenic
GAAAGGAAAAGAGAATCAAG+AGG 0.552633 8:+73115756 None:intergenic
AAAGTCAGAGAATGGCAAGT+TGG 0.554287 8:-73113924 MsG0880046412.01.T01:three_prime_UTR
TGCGTAATAAAGTCAGAGAA+TGG 0.558093 8:-73113932 MsG0880046412.01.T01:three_prime_UTR
GATAGATAAATATATATGGC+GGG 0.563209 8:-73115882 MsG0880046412.01.T01:exon
ATATTCATGTTCAAATACAT+AGG 0.565080 8:+73114229 None:intergenic
AATACAAAGTTTCAGAGGGA+GGG 0.565317 8:+73116125 None:intergenic
TGCAACAGGTCTTTCTTCGG+AGG 0.566461 8:-73115216 MsG0880046412.01.T01:CDS
TGATAGATAAATATATATGG+CGG 0.578645 8:-73115883 MsG0880046412.01.T01:exon
ACTGATGGAGTGTTAGAGAC+AGG 0.581498 8:-73114260 MsG0880046412.01.T01:CDS
GACAGCCCACGTTACACTGA+TGG 0.581501 8:-73114275 MsG0880046412.01.T01:CDS
GATAAATATATATGGCGGGT+GGG 0.581991 8:-73115878 MsG0880046412.01.T01:exon
AGATAAATATATATGGCGGG+TGG 0.584083 8:-73115879 MsG0880046412.01.T01:exon
CTTGCCGTGGCTGCAAACCA+AGG 0.588928 8:+73115034 None:intergenic
GAAGAAACGGCGTCTCTCAG+TGG 0.590083 8:-73115136 MsG0880046412.01.T01:CDS
TTGATGAATTATCATGTGGC+GGG 0.592126 8:+73114123 None:intergenic
CTTGATGAATTATCATGTGG+CGG 0.594488 8:+73114122 None:intergenic
ATCAAGTTATGGATTTCAAG+AGG 0.600284 8:-73114105 MsG0880046412.01.T01:CDS
TGAATTATCATGTGGCGGGT+CGG 0.601580 8:+73114127 None:intergenic
ACAAGGTGAAAGTGAAACAA+AGG 0.601903 8:-73114444 MsG0880046412.01.T01:CDS
GATGTGTGATTGGGAGGTGT+GGG 0.603238 8:+73116045 None:intergenic
GACTCAATACAAAGTTTCAG+AGG 0.604227 8:+73116120 None:intergenic
TTGAAGATATTAGTTCAGCA+AGG 0.615993 8:-73114316 MsG0880046412.01.T01:CDS
TGGTCTTCCATCTTGCACGA+CGG 0.616539 8:+73114992 None:intergenic
TACAAAGTTTCAGAGGGAGG+GGG 0.618670 8:+73116127 None:intergenic
GAAGACCAAACAGCTTGAGA+AGG 0.620125 8:-73114977 MsG0880046412.01.T01:CDS
TAAAGATCTAAGACTTATGG+CGG 0.625239 8:+73115996 None:intergenic
CAATACAAAGTTTCAGAGGG+AGG 0.626422 8:+73116124 None:intergenic
CAAGAGGGAAAATTCAAACA+AGG 0.630062 8:-73114461 MsG0880046412.01.T01:CDS
CTCTTGTAGGATAGAAATGG+CGG 0.634642 8:-73113868 MsG0880046412.01.T01:three_prime_UTR
AACACTCCATCAGTGTAACG+TGG 0.635850 8:+73114269 None:intergenic
TAACTTGATGAATTATCATG+TGG 0.637883 8:+73114119 None:intergenic
AACCAAATAGCAACTTGCCG+TGG 0.641928 8:+73115021 None:intergenic
ACTCAATACAAAGTTTCAGA+GGG 0.644191 8:+73116121 None:intergenic
AGATACAGAGACAGAACTAG+TGG 0.648443 8:+73116195 None:intergenic
CATATCATTTAATAAGACCA+AGG 0.657999 8:+73114059 None:intergenic
GAGGTGTGGGAACAACGGCA+GGG 0.660019 8:+73116058 None:intergenic
AATCAACAACAAACTCCTCG+TGG 0.662080 8:-73115795 MsG0880046412.01.T01:CDS
ATTGGGAGGTGTGGGAACAA+CGG 0.662181 8:+73116053 None:intergenic
ACTTGCAAGAGAGAAACAAG+AGG 0.662555 8:-73114477 MsG0880046412.01.T01:CDS
TCAGAAACTGAATCAACCAA+AGG 0.671154 8:+73114392 None:intergenic
TGATCTTGACGAAAACGGCG+AGG 0.684795 8:-73115190 MsG0880046412.01.T01:CDS
CTTGCAAGAGAGAAACAAGA+GGG 0.688671 8:-73114476 MsG0880046412.01.T01:CDS
ACACTCCATCAGTGTAACGT+GGG 0.696078 8:+73114270 None:intergenic
ACAACAAGCTTGAACCAGAG+AGG 0.699556 8:-73115077 MsG0880046412.01.T01:CDS
TGTTGAGAAGAGTTTCCACG+AGG 0.738171 8:+73115780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATATAGTATCTTAT+AGG - Chr8:73114398-73114417 MsG0880046412.01.T01:CDS 10.0%
!!! ATGTAATTTTAATAAAATAG+TGG - Chr8:73114702-73114721 MsG0880046412.01.T01:intron 10.0%
!!! TATTAATTTTTACAATATCA+AGG + Chr8:73114387-73114406 None:intergenic 10.0%
!!! TGATATATATATTTTTGAAT+AGG - Chr8:73114738-73114757 MsG0880046412.01.T01:intron 10.0%
!!! TTTTGAAGATTTTAAATAAA+TGG - Chr8:73114503-73114522 MsG0880046412.01.T01:CDS 10.0%
!! AAAAAAATTACTGTTACATA+TGG - Chr8:73114579-73114598 MsG0880046412.01.T01:intron 15.0%
!! TTGTGATAGATAAATATATA+TGG - Chr8:73114137-73114156 MsG0880046412.01.T01:CDS 15.0%
!!! TATAAGATAAAGTTTAACTT+TGG - Chr8:73114102-73114121 MsG0880046412.01.T01:CDS 15.0%
!!! TTGTAAATTAATGAAACTTT+TGG - Chr8:73116201-73116220 MsG0880046412.01.T01:five_prime_UTR 15.0%
!!! TTTATATTTGAAATATTTGC+AGG + Chr8:73114189-73114208 None:intergenic 15.0%
!!! TTTTTTTTTTGAGAAAGTAA+CGG + Chr8:73114562-73114581 None:intergenic 15.0%
!! AATTTACAATGCAACAAAAT+GGG + Chr8:73116190-73116209 None:intergenic 20.0%
!! ACATAAAATTCATGAAATTG+TGG - Chr8:73115433-73115452 MsG0880046412.01.T01:intron 20.0%
!! ATATTCATGTTCAAATACAT+AGG + Chr8:73115797-73115816 None:intergenic 20.0%
!! ATTTGAACATGAATATCAAT+CGG - Chr8:73115801-73115820 MsG0880046412.01.T01:CDS 20.0%
!! TAATTTACAATGCAACAAAA+TGG + Chr8:73116191-73116210 None:intergenic 20.0%
!! TGATAGATAAATATATATGG+CGG - Chr8:73114140-73114159 MsG0880046412.01.T01:CDS 20.0%
! ATTTACAATGCAACAAAATG+GGG + Chr8:73116189-73116208 None:intergenic 25.0%
! CATATCATTTAATAAGACCA+AGG + Chr8:73115967-73115986 None:intergenic 25.0%
! CATGATAATTCATCAAGTTA+TGG - Chr8:73115907-73115926 MsG0880046412.01.T01:five_prime_UTR 25.0%
! GATAGATAAATATATATGGC+GGG - Chr8:73114141-73114160 MsG0880046412.01.T01:CDS 25.0%
! TAACTTGATGAATTATCATG+TGG + Chr8:73115907-73115926 None:intergenic 25.0%
! TTGTAGCTATATAGCTATTA+TGG - Chr8:73114070-73114089 MsG0880046412.01.T01:CDS 25.0%
!! GATTAAAGATCTAAGACTTA+TGG + Chr8:73114033-73114052 None:intergenic 25.0%
!!! ATCAATGTTTTGATGTCTTT+AGG + Chr8:73114434-73114453 None:intergenic 25.0%
!!! TCAAGTTTTGTAAAGATGTA+AGG + Chr8:73115862-73115881 None:intergenic 25.0%
AAAGAGAATCAAACAAGAGA+TGG + Chr8:73113872-73113891 None:intergenic 30.0%
ACCAAAGGTTTATTCATTGT+TGG + Chr8:73115619-73115638 None:intergenic 30.0%
ACCAACAATGAATAAACCTT+TGG - Chr8:73115615-73115634 MsG0880046412.01.T01:intron 30.0%
ACTCAATACAAAGTTTCAGA+GGG + Chr8:73113905-73113924 None:intergenic 30.0%
ATCAAGTTATGGATTTCAAG+AGG - Chr8:73115918-73115937 MsG0880046412.01.T01:five_prime_UTR 30.0%
ATCCAAATTGTCAATTGTTG+AGG - Chr8:73115663-73115682 MsG0880046412.01.T01:intron 30.0%
ATTTCATTTCATACCCGAAA+TGG - Chr8:73116126-73116145 MsG0880046412.01.T01:five_prime_UTR 30.0%
TCTTTGTGATGTTTCAATAC+AGG - Chr8:73115501-73115520 MsG0880046412.01.T01:intron 30.0%
TGTGGTTCACATAAAACTAT+TGG - Chr8:73115451-73115470 MsG0880046412.01.T01:intron 30.0%
TTGAAGATATTAGTTCAGCA+AGG - Chr8:73115707-73115726 MsG0880046412.01.T01:intron 30.0%
TTGAATAGGTTCAAGATCTA+TGG - Chr8:73114752-73114771 MsG0880046412.01.T01:intron 30.0%
TTTCATTTCATACCCGAAAT+GGG - Chr8:73116127-73116146 MsG0880046412.01.T01:five_prime_UTR 30.0%
! GTTTTTGATATCTCTGCAAA+CGG + Chr8:73114620-73114639 None:intergenic 30.0%
! TAAAGATCTAAGACTTATGG+CGG + Chr8:73114030-73114049 None:intergenic 30.0%
!! AGTTTTGTAAAGATGTAAGG+AGG + Chr8:73115859-73115878 None:intergenic 30.0%
!! TAGTATCTTATAGGTTGATG+CGG - Chr8:73114407-73114426 MsG0880046412.01.T01:CDS 30.0%
AAGATCATCATCAAGCTCTT+TGG - Chr8:73115941-73115960 MsG0880046412.01.T01:five_prime_UTR 35.0%
AAGATGTTCAAGGAAGGAAA+AGG - Chr8:73114784-73114803 MsG0880046412.01.T01:intron 35.0%
AATACAAAGTTTCAGAGGGA+GGG + Chr8:73113901-73113920 None:intergenic 35.0%
ACAAGGTGAAAGTGAAACAA+AGG - Chr8:73115579-73115598 MsG0880046412.01.T01:intron 35.0%
ACCTTCTCAAAGAGAAAGAT+AGG - Chr8:73115120-73115139 MsG0880046412.01.T01:CDS 35.0%
AGAAAGAAGCAGAAGAAGAA+AGG + Chr8:73114287-73114306 None:intergenic 35.0%
AGCCTCAACAATTGACAATT+TGG + Chr8:73115668-73115687 None:intergenic 35.0%
ATAATCCTTCTCAAGCTGTT+TGG + Chr8:73115054-73115073 None:intergenic 35.0%
CAAGAGGGAAAATTCAAACA+AGG - Chr8:73115562-73115581 MsG0880046412.01.T01:intron 35.0%
CTTGATGAATTATCATGTGG+CGG + Chr8:73115904-73115923 None:intergenic 35.0%
GAAAGATAGGTTACAATCTG+AGG - Chr8:73115133-73115152 MsG0880046412.01.T01:CDS 35.0%
GAAAGGAAAAGAGAATCAAG+AGG + Chr8:73114270-73114289 None:intergenic 35.0%
GACTCAATACAAAGTTTCAG+AGG + Chr8:73113906-73113925 None:intergenic 35.0%
GATTTCAGTGATGTGTGATT+GGG + Chr8:73113990-73114009 None:intergenic 35.0%
GGATTTGATCTTGACGAAAA+CGG - Chr8:73114828-73114847 MsG0880046412.01.T01:intron 35.0%
TATATAGCTACAAGCTAGCT+AGG + Chr8:73114063-73114082 None:intergenic 35.0%
TCACTCACTTTGCACAAAAA+GGG + Chr8:73116053-73116072 None:intergenic 35.0%
TCAGAAACTGAATCAACCAA+AGG + Chr8:73115634-73115653 None:intergenic 35.0%
TCTTCTTCTGCTTCTTTCTT+TGG - Chr8:73114288-73114307 MsG0880046412.01.T01:CDS 35.0%
TGAAACAAAGGAATTCTTGC+AGG - Chr8:73115591-73115610 MsG0880046412.01.T01:intron 35.0%
TGATTTCAGTGATGTGTGAT+TGG + Chr8:73113991-73114010 None:intergenic 35.0%
TGCGTAATAAAGTCAGAGAA+TGG - Chr8:73116091-73116110 MsG0880046412.01.T01:five_prime_UTR 35.0%
TGTCTTCTTCATCTTGTGAT+AGG + Chr8:73115828-73115847 None:intergenic 35.0%
TTCATCAATCCGAGAAGAAA+CGG - Chr8:73114874-73114893 MsG0880046412.01.T01:intron 35.0%
TTGATGAATTATCATGTGGC+GGG + Chr8:73115903-73115922 None:intergenic 35.0%
! ACCTATCTTTCTCTTTGAGA+AGG + Chr8:73115124-73115143 None:intergenic 35.0%
! AGATAAATATATATGGCGGG+TGG - Chr8:73114144-73114163 MsG0880046412.01.T01:CDS 35.0%
! CTTCTTTTGATCGGAGTAAT+GGG - Chr8:73113938-73113957 MsG0880046412.01.T01:three_prime_UTR 35.0%
! TCTTGTTGCCTTCTTTTGAT+CGG - Chr8:73113929-73113948 MsG0880046412.01.T01:three_prime_UTR 35.0%
! TTGCAAGTACCTTTTCAGTT+AGG + Chr8:73115534-73115553 None:intergenic 35.0%
! TTGGTTGATTCAGTTTCTGA+GGG - Chr8:73115634-73115653 MsG0880046412.01.T01:intron 35.0%
! TTTGGTTGATTCAGTTTCTG+AGG - Chr8:73115633-73115652 MsG0880046412.01.T01:intron 35.0%
!! GATAAATATATATGGCGGGT+GGG - Chr8:73114145-73114164 MsG0880046412.01.T01:CDS 35.0%
!! TCTTGAGAAAAGCTTTGAAG+AGG - Chr8:73114923-73114942 MsG0880046412.01.T01:CDS 35.0%
!!! GTGAGTTTTGAAGATGTTCA+AGG - Chr8:73114774-73114793 MsG0880046412.01.T01:intron 35.0%
!!! GTTTTGAAGATGTTCAAGGA+AGG - Chr8:73114778-73114797 MsG0880046412.01.T01:intron 35.0%
AAAGTCAGAGAATGGCAAGT+TGG - Chr8:73116099-73116118 MsG0880046412.01.T01:five_prime_UTR 40.0%
AATCAACAACAAACTCCTCG+TGG - Chr8:73114228-73114247 MsG0880046412.01.T01:CDS 40.0%
ACTTGCAAGAGAGAAACAAG+AGG - Chr8:73115546-73115565 MsG0880046412.01.T01:intron 40.0%
AGATACAGAGACAGAACTAG+TGG + Chr8:73113831-73113850 None:intergenic 40.0%
ATACAAAGTTTCAGAGGGAG+GGG + Chr8:73113900-73113919 None:intergenic 40.0%
CAATACAAAGTTTCAGAGGG+AGG + Chr8:73113902-73113921 None:intergenic 40.0%
CCATTACTCCGATCAAAAGA+AGG + Chr8:73113940-73113959 None:intergenic 40.0%
CTCACTCACTTTGCACAAAA+AGG + Chr8:73116054-73116073 None:intergenic 40.0%
CTCTTGTAGGATAGAAATGG+CGG - Chr8:73116155-73116174 MsG0880046412.01.T01:five_prime_UTR 40.0%
CTTGCAAGAGAGAAACAAGA+GGG - Chr8:73115547-73115566 MsG0880046412.01.T01:intron 40.0%
TGCGATTCAGATTGCAATCA+TGG - Chr8:73114456-73114475 MsG0880046412.01.T01:CDS 40.0%
TGGCTCTTGTAGGATAGAAA+TGG - Chr8:73116152-73116171 MsG0880046412.01.T01:five_prime_UTR 40.0%
TTCAGCAAGGAGTGACATAT+TGG - Chr8:73115720-73115739 MsG0880046412.01.T01:intron 40.0%
! CCTTCTTTTGATCGGAGTAA+TGG - Chr8:73113937-73113956 MsG0880046412.01.T01:three_prime_UTR 40.0%
!!! GGTGGGAGAGTTTTTTCAAA+TGG - Chr8:73114162-73114181 MsG0880046412.01.T01:CDS 40.0%
AACACTCCATCAGTGTAACG+TGG + Chr8:73115757-73115776 None:intergenic 45.0%
AACCAAATAGCAACTTGCCG+TGG + Chr8:73115005-73115024 None:intergenic 45.0%
ACAACAAGCTTGAACCAGAG+AGG - Chr8:73114946-73114965 MsG0880046412.01.T01:CDS 45.0%
ACACTCCATCAGTGTAACGT+GGG + Chr8:73115756-73115775 None:intergenic 45.0%
ACCAAGCTAGCTAAAGACCT+TGG - Chr8:73114972-73114991 MsG0880046412.01.T01:CDS 45.0%
ACCAAGGTCTTTAGCTAGCT+TGG + Chr8:73114976-73114995 None:intergenic 45.0%
AGGTGCAACAGGTCTTTCTT+CGG - Chr8:73114804-73114823 MsG0880046412.01.T01:intron 45.0%
ATCATCAAGCTCTTTGGCCT+TGG - Chr8:73115947-73115966 MsG0880046412.01.T01:five_prime_UTR 45.0%
CATAATTCAGATCGCAGTCG+CGG - Chr8:73114648-73114667 MsG0880046412.01.T01:intron 45.0%
GAAGACCAAACAGCTTGAGA+AGG - Chr8:73115046-73115065 MsG0880046412.01.T01:CDS 45.0%
GGTAGCAAGCCTAACTGAAA+AGG - Chr8:73115522-73115541 MsG0880046412.01.T01:intron 45.0%
TACAAAGTTTCAGAGGGAGG+GGG + Chr8:73113899-73113918 None:intergenic 45.0%
TACAAGAGCCACACCCATTT+CGG + Chr8:73116143-73116162 None:intergenic 45.0%
TGTTGAGAAGAGTTTCCACG+AGG + Chr8:73114246-73114265 None:intergenic 45.0%
TTCAAAACCGTCGTGCAAGA+TGG - Chr8:73115024-73115043 MsG0880046412.01.T01:CDS 45.0%
TTCAGTGATGTGTGATTGGG+AGG + Chr8:73113987-73114006 None:intergenic 45.0%
TTTCATACCCGAAATGGGTG+TGG - Chr8:73116132-73116151 MsG0880046412.01.T01:five_prime_UTR 45.0%
! AAGGAAGGAAAAGGTGCAAC+AGG - Chr8:73114793-73114812 MsG0880046412.01.T01:intron 45.0%
! ACTGATGGAGTGTTAGAGAC+AGG - Chr8:73115763-73115782 MsG0880046412.01.T01:CDS 45.0%
! GATTCAGTTTCTGAGGGTGA+AGG - Chr8:73115640-73115659 MsG0880046412.01.T01:intron 45.0%
!! TGAATTATCATGTGGCGGGT+CGG + Chr8:73115899-73115918 None:intergenic 45.0%
ACAAGAGCCACACCCATTTC+GGG + Chr8:73116142-73116161 None:intergenic 50.0%
GAAATGGGTGTGGCTCTTGT+AGG - Chr8:73116142-73116161 MsG0880046412.01.T01:five_prime_UTR 50.0%
TGAGAGACGCCGTTTCTTCT+CGG + Chr8:73114886-73114905 None:intergenic 50.0%
TGATCTTGACGAAAACGGCG+AGG - Chr8:73114833-73114852 MsG0880046412.01.T01:intron 50.0%
TGATGTGTGATTGGGAGGTG+TGG + Chr8:73113982-73114001 None:intergenic 50.0%
TGCAACAGGTCTTTCTTCGG+AGG - Chr8:73114807-73114826 MsG0880046412.01.T01:intron 50.0%
TGGTCTTCCATCTTGCACGA+CGG + Chr8:73115034-73115053 None:intergenic 50.0%
! AGACTTATGGCGGAAGAAGC+TGG + Chr8:73114020-73114039 None:intergenic 50.0%
! AGCCACGGCAAGTTGCTATT+TGG - Chr8:73115000-73115019 MsG0880046412.01.T01:CDS 50.0%
! ATTGGGAGGTGTGGGAACAA+CGG + Chr8:73113973-73113992 None:intergenic 50.0%
! GATGTGTGATTGGGAGGTGT+GGG + Chr8:73113981-73114000 None:intergenic 50.0%
!! AAGACCTTGGTTTGCAGCCA+CGG - Chr8:73114985-73115004 MsG0880046412.01.T01:CDS 50.0%
!! GCTAGCTTGGTTTTCCTCTC+TGG + Chr8:73114963-73114982 None:intergenic 50.0%
CGAAAACGGCGAGGATGAGA+TGG - Chr8:73114842-73114861 MsG0880046412.01.T01:intron 55.0%
GAAGAAACGGCGTCTCTCAG+TGG - Chr8:73114887-73114906 MsG0880046412.01.T01:intron 55.0%
GACAGCCCACGTTACACTGA+TGG - Chr8:73115748-73115767 MsG0880046412.01.T01:CDS 55.0%
CTTGCCGTGGCTGCAAACCA+AGG + Chr8:73114992-73115011 None:intergenic 60.0%
GAGGTGTGGGAACAACGGCA+GGG + Chr8:73113968-73113987 None:intergenic 60.0%
! GGAGGTGTGGGAACAACGGC+AGG + Chr8:73113969-73113988 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 73113790 73116255 73113790 ID=MsG0880046412.01;Name=MsG0880046412.01
Chr8 mRNA 73113790 73116255 73113790 ID=MsG0880046412.01.T01;Parent=MsG0880046412.01;Name=MsG0880046412.01.T01;_AED=0.48;_eAED=0.48;_QI=366|1|1|1|0.5|0.33|3|277|334
Chr8 exon 73113790 73114522 73113790 ID=MsG0880046412.01.T01:exon:5767;Parent=MsG0880046412.01.T01
Chr8 exon 73114891 73115285 73114891 ID=MsG0880046412.01.T01:exon:5766;Parent=MsG0880046412.01.T01
Chr8 exon 73115736 73116255 73115736 ID=MsG0880046412.01.T01:exon:5765;Parent=MsG0880046412.01.T01
Chr8 five_prime_UTR 73115890 73116255 73115890 ID=MsG0880046412.01.T01:five_prime_utr;Parent=MsG0880046412.01.T01
Chr8 CDS 73115736 73115889 73115736 ID=MsG0880046412.01.T01:cds;Parent=MsG0880046412.01.T01
Chr8 CDS 73114891 73115285 73114891 ID=MsG0880046412.01.T01:cds;Parent=MsG0880046412.01.T01
Chr8 CDS 73114067 73114522 73114067 ID=MsG0880046412.01.T01:cds;Parent=MsG0880046412.01.T01
Chr8 three_prime_UTR 73113790 73114066 73113790 ID=MsG0880046412.01.T01:three_prime_utr;Parent=MsG0880046412.01.T01
Gene Sequence

>MsG0880046412.01.T01

ATGGCGGGTGGGAGAGTTTTTTCAAATGGTCCTGCAAATATTTCAAATATAAATATGAATATTTTGCTTCAGAATCAACAACAAACTCCTCGTGGAAACTCTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTGCTTCTTTCTTTGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAAGGAAAAGGTGCAACAGGTCTTTCTTCGGAGGATTTGATCTTGACGAAAACGGCGAGGATGAGATGGATGAGTACTTTCATCAATCCGAGAAGAAACGGCGTCTCTCAGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAAGAGGACAACAAGCTTGAACCAGAGAGGAAAACCAAGCTAGCTAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGTCGTGCAAGATGGAAGACCAAACAGCTTGAGAAGGATTATGATTCTCTTAATGATAGTTATGAGTCTCTTAAGACAGATTATGACAACCTTCTCAAAGAGAAAGATAGGTTACAATCTGAGGTAGCAAGCCTAACTGAAAAGGTACTTGCAAGAGAGAAACAAGAGGGAAAATTCAAACAAGGTGAAAGTGAAACAAAGGAATTCTTGCAGGAACCAACAATGAATAAACCTTTGGTTGATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAACAATAACAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACTGATGGAGTGTTAGAGACAGGTGATTCTTCCTATGTATTTGAACATGAATATCAATCGGACCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTACATCTTTACAAAACTTGAAGATGTGAATTACTCCGACCCGCCACATGATAATTCATCAAGTTATGGATTTCAAGAGGAAGATCATCATCAAGCTCTTTGGCCTTGGTCTTATTAA

Protein sequence

>MsG0880046412.01.T01

MAGGRVFSNGPANISNINMNILLQNQQQTPRGNSSQQPLDSLFLSSSASFFGSRSMVSFEDVQGRKRCNRSFFGGFDLDENGEDEMDEYFHQSEKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDSYESLKTDYDNLLKEKDRLQSEVASLTEKVLAREKQEGKFKQGESETKEFLQEPTMNKPLVDSVSEGEGSKLSIVEASNNNNKLEDISSARSDILDCDSPRYTDGVLETGDSSYVFEHEYQSDLSQDEEDNLLPPYIFTKLEDVNYSDPPHDNSSSYGFQEEDHHQALWPWSY*