AlfalfaGEDB | MsG0880046546.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046546.01

KEGG: -
GO: GO:0003677 GO:0005634
PFAM: PF03110

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046546.01.T01	XP_013458014.1	96.383	470	17	0	1	470	1	470	0	938

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046546.01.T01	Q94JW8	64.286	126	32	3	75	197	83	198	7.65E-44	162

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046546.01.T01	A0A072V1P8	96.383	470	17	0	1	470	1	470	0.0	938

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0880046546.01.T01	TF	SBP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046546.01.T01	MTR_4g109770	96.383	470	17	0	1	470	1	470	0.0	938
MsG0880046546.01.T01	MTR_2g461920	61.866	493	149	11	12	470	52	539	1.86e-171	493
MsG0880046546.01.T01	MTR_5g046670	49.315	219	88	8	56	264	174	379	1.18e-50	179
MsG0880046546.01.T01	MTR_3g099080	54.348	138	42	4	75	198	43	173	3.89e-38	143
MsG0880046546.01.T01	MTR_7g028740	35.331	317	179	8	75	382	26	325	8.79e-38	142
MsG0880046546.01.T01	MTR_8g096780	38.194	288	132	11	75	339	45	309	1.12e-36	139
MsG0880046546.01.T01	MTR_7g444860	70.000	80	24	0	117	196	143	222	6.38e-34	130
MsG0880046546.01.T01	MTR_7g092930	69.136	81	25	0	117	197	62	142	7.03e-34	130
MsG0880046546.01.T01	MTR_3g085180	50.769	130	57	2	72	198	115	240	8.36e-34	132
MsG0880046546.01.T01	MTR_1g053715	38.197	233	106	6	123	351	74	272	1.71e-33	129

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046546.01.T01	AT1G69170	64.286	126	32	3	75	197	83	198	7.80e-45	162
MsG0880046546.01.T01	AT5G50670	46.067	178	84	4	123	288	101	278	2.57e-37	140
MsG0880046546.01.T01	AT5G50670	46.067	178	84	4	123	288	101	278	2.57e-37	140
MsG0880046546.01.T01	AT5G50570	46.067	178	84	4	123	288	101	278	2.57e-37	140
MsG0880046546.01.T01	AT5G50570	46.067	178	84	4	123	288	101	278	2.57e-37	140
MsG0880046546.01.T01	AT1G27370	68.966	87	27	0	123	209	176	262	2.36e-36	137
MsG0880046546.01.T01	AT1G27370	68.966	87	27	0	123	209	176	262	5.57e-36	137
MsG0880046546.01.T01	AT1G27370	68.966	87	27	0	123	209	176	262	5.57e-36	137
MsG0880046546.01.T01	AT1G27370	68.966	87	27	0	123	209	176	262	5.57e-36	137
MsG0880046546.01.T01	AT1G27370	68.966	87	27	0	123	209	176	262	5.57e-36	137

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Find 96 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGCTGCTGGTGGCT+TGG	0.511710	8:+74653465	None:intergenic
AAACCACTTTGGAAGACCTC+TGG	0.529651	8:+74653436	None:intergenic
AAGTCATCTCAGTCCTATAT+TGG	0.441537	8:-74652948	MsG0880046546.01.T01:CDS
AATAACCAAAGGGTTATCAA+AGG	0.561243	8:+74653069	None:intergenic
AATGAGAGAATCCCAACCAT+TGG	0.523865	8:+74655100	None:intergenic
AATGTTGCCACATCCACTAC+AGG	0.543311	8:-74653280	MsG0880046546.01.T01:CDS
AATTCCCTTTGATAACCCTT+TGG	0.423487	8:-74653074	MsG0880046546.01.T01:CDS
AATTCTGTGGTGGAATCCAA+TGG	0.627306	8:-74655116	MsG0880046546.01.T01:CDS
ACTCCTATAGTCATTGTGAA+TGG	0.516933	8:-74654852	MsG0880046546.01.T01:CDS
ACTGAACTTACTGCCTGTAG+TGG	0.586429	8:+74653267	None:intergenic

Showing 1 to 10 of 96 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAACCAAAGGGTTATCAA+AGG	+	Chr8:74654969-74654988	None:intergenic	30.0%
ACTGCATATTGTCAAGTTTA+TGG	-	Chr8:74653090-74653109	MsG0880046546.01.T01:CDS	30.0%
ATAAAAGTCTATCAGACACT+CGG	+	Chr8:74655045-74655064	None:intergenic	30.0%
ATAACCAAAGGGTTATCAAA+GGG	+	Chr8:74654968-74654987	None:intergenic	30.0%
ATAGTAATCAATAGGTGCAA+AGG	+	Chr8:74653800-74653819	None:intergenic	30.0%
ATTCCATTCACAATGACTAT+AGG	+	Chr8:74653189-74653208	None:intergenic	30.0%
ATTTCTAACTAGCTGGAATT+TGG	-	Chr8:74653322-74653341	MsG0880046546.01.T01:CDS	30.0%
CATTCACAAAATCTGAATCA+TGG	+	Chr8:74655162-74655181	None:intergenic	30.0%
CGAATGTTGAAAACAAAACA+AGG	+	Chr8:74653769-74653788	None:intergenic	30.0%
GAAGTTTATGATTGACCATA+AGG	+	Chr8:74654259-74654278	None:intergenic	30.0%

Showing 1 to 10 of 171 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	74652733	74655324	74652733	ID=MsG0880046546.01;Name=MsG0880046546.01
Chr8	mRNA	74652733	74655324	74652733	ID=MsG0880046546.01.T01;Parent=MsG0880046546.01;Name=MsG0880046546.01.T01;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|1\|1\|1\|3\|0\|470
Chr8	exon	74654819	74655324	74654819	ID=MsG0880046546.01.T01:exon:31174;Parent=MsG0880046546.01.T01
Chr8	exon	74653987	74654120	74653987	ID=MsG0880046546.01.T01:exon:31173;Parent=MsG0880046546.01.T01
Chr8	exon	74652733	74653505	74652733	ID=MsG0880046546.01.T01:exon:31172;Parent=MsG0880046546.01.T01
Chr8	CDS	74654819	74655324	74654819	ID=MsG0880046546.01.T01:cds;Parent=MsG0880046546.01.T01
Chr8	CDS	74653987	74654120	74653987	ID=MsG0880046546.01.T01:cds;Parent=MsG0880046546.01.T01
Chr8	CDS	74652733	74653505	74652733	ID=MsG0880046546.01.T01:cds;Parent=MsG0880046546.01.T01

Gene Sequence

>MsG0880046546.01.T01

ATGGAATCTTGGAGTTATATTTCTGAAGAAAAAGGTTCTGAAGAATTAGGCTTTTGTGAAATGTTTGGGAAACAATATTCAGATGATTTCAATTTCATTGGAAGTGTTCCAAGCAAGAAACTTGATGGTAAATTTGATGACCCAAGTGAGTTTTCTGTAAAAGGGGACACAAATTTCAAGCTTTCAAATTCTGTGGTGGAATCCAATGGTTGGGATTCTCTCATTGATTTGAAGCTAGGAAGATTTGATGATCATGGCAATGCTTCAATTGATGCGGCATTTTCCAAAGGAGCAGCACCTATTTTGTCTTCTTGTGAGTCTTCAACACCTCCCAAGAGAGTGAGAGTGCACTCAATGACTGCATATTGTCAAGTTTATGGATGTAACAAGGATCTTAGTTCTTGTAAGGACTACCATAAGAGGCATAAAGTTTGTGAGGTTCACTCCAAGACTCCTATAGTCATTGTGAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGCTGTCTGAGTTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGGCGTTCACTCTACAAATTCTGGGAGACTGTTTCAGCCATTTGGTGATATCAGATTCCAGGGAACCAAGCCACCAGCAGCATCTTTTCTCTATCCAGAGGTCTTCCAAAGTGGTTTCTGGAGACCTATGAAAGCAGAACATGAAGCTGGCTTTAGGCATTTTTCTTCTGTGCCTGTCACCAATGGACATCTTCAATCAAGATCTCCGTTTCCTTCGTACAACGAAAAACAATTTCCCTTTCTTCATGAAAATGTTGCCACATCCACTACAGGCAGTAAGTTCAGTGAAAACAATAGCCATTATGCGCATGCCATTGGCTACACCTCCTTAGGAAGCGAAGACTTCAATGTTTTTCATACCGCACCAAGCATTCAAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAGTCCAATAACACTTCAAGCCAGTCCTTGGAAATTCCCTTTGATAACCCTTTGGTTATTCCAAGCAGCCATAGCCATGTCTACAGCATAAGATCACAAGCGACTTCCTCAAGCCGAGTGTCTGATAGACTTTTATCCGAATTAAATCCTACAGATGGAAGTCATCTCAGTCCTATATTGGTACCAGACAATAATGATATCGTGAACTTTGAAATGGAAGACGGGATCTTCCATGATTCAGATTTTGTGAATGCGAAAGACTGCCTTTCTTGTGAAGATGATGCAACCATCAATTTACTACAACTGTCGTCGCAGCTTCAACGAGTTGAGCATCATAGACAATCATTGCAGGTGAAGAAAGAGTTTGATTCTTCTTGCACTCTCCGAATTACTTAA

Protein sequence

>MsG0880046546.01.T01

MESWSYISEEKGSEELGFCEMFGKQYSDDFNFIGSVPSKKLDGKFDDPSEFSVKGDTNFKLSNSVVESNGWDSLIDLKLGRFDDHGNASIDAAFSKGAAPILSSCESSTPPKRVRVHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQGVHSTNSGRLFQPFGDIRFQGTKPPAASFLYPEVFQSGFWRPMKAEHEAGFRHFSSVPVTNGHLQSRSPFPSYNEKQFPFLHENVATSTTGSKFSENNSHYAHAIGYTSLGSEDFNVFHTAPSIQGLSGISDSCALSLLSSQSNNTSSQSLEIPFDNPLVIPSSHSHVYSIRSQATSSSRVSDRLLSELNPTDGSHLSPILVPDNNDIVNFEMEDGIFHDSDFVNAKDCLSCEDDATINLLQLSSQLQRVEHHRQSLQVKKEFDSSCTLRIT*