AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046748.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046748.01.T01 MTR_4g113940 72.069 290 54 3 1 283 1 270 2.60e-150 421
MsG0880046748.01.T01 MTR_4g113890 65.862 290 31 4 1 282 1 230 9.94e-118 337
MsG0880046748.01.T01 MTR_4g113860 46.519 316 127 5 1 283 1 307 8.46e-90 270
MsG0880046748.01.T01 MTR_4g113970 51.172 256 83 7 1 216 1 254 1.69e-75 231
MsG0880046748.01.T01 MTR_3g050390 42.471 259 98 8 31 283 15 228 5.29e-56 181
MsG0880046748.01.T01 MTR_8g066730 26.571 350 164 10 16 283 36 374 2.96e-25 103
MsG0880046748.01.T01 MTR_8g066730 29.020 255 110 6 16 207 36 282 1.52e-22 94.7
MsG0880046748.01.T01 MTR_3g466460 45.745 94 21 1 220 283 1 94 2.57e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046748.01.T01 AT3G19360 38.127 299 133 10 31 283 81 373 7.13e-47 161
MsG0880046748.01.T01 AT3G19360 38.127 299 133 10 31 283 81 373 7.13e-47 161
MsG0880046748.01.T01 AT1G32360 28.378 296 143 9 54 283 90 382 1.76e-25 104
MsG0880046748.01.T01 AT2G35430 25.210 238 111 8 55 283 71 250 5.78e-15 73.2

Find 71 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCATTGAAACTAATAATT+TGG 0.147683 8:+77630299 MsG0880046748.01.T01:CDS
CCAACTAGCTTCTGCGAATT+TGG 0.173447 8:-77630084 None:intergenic
AGCCAGATCAATCGAATTTA+CGG 0.290260 8:+77631914 MsG0880046748.01.T01:CDS
TCAATCGAATTTACGGTGAT+TGG 0.313071 8:+77631921 MsG0880046748.01.T01:CDS
ATGAAGATCCTGCACAGTTT+AGG 0.341189 8:+77630238 MsG0880046748.01.T01:CDS
CGCATTTAGTTGAAGAGATA+AGG 0.343409 8:+77630052 MsG0880046748.01.T01:CDS
TTCCAAATTATTAGTTTCAA+TGG 0.356757 8:-77630301 None:intergenic
CCAACTAAGAAGCGTATACT+TGG 0.358684 8:+77631881 MsG0880046748.01.T01:CDS
ATTTGTACTAAGTTCAGATT+TGG 0.359410 8:+77629997 MsG0880046748.01.T01:CDS
GAAGCACTCTCTTGATTTCA+AGG 0.359778 8:-77630271 None:intergenic
ATCGGCTGCAGCTGGAAAAT+CGG 0.361010 8:+77630121 MsG0880046748.01.T01:CDS
GATAAGTGCCCCTTGCTTGT+TGG 0.368541 8:-77630341 None:intergenic
TGAACAACAATGACTTCAAA+AGG 0.386314 8:+77629878 MsG0880046748.01.T01:CDS
AAATCAGAGTTACAAGTTCC+TGG 0.400098 8:+77631782 MsG0880046748.01.T01:intron
AACAAGCAAGGGGCACTTAT+CGG 0.401471 8:+77630343 MsG0880046748.01.T01:CDS
CTGCTGCTCTTCCTTTGCTA+TGG 0.410690 8:-77631858 None:intergenic
AGACTAAACTGTGTCGCAAT+TGG 0.421823 8:+77630367 MsG0880046748.01.T01:CDS
AGATTTGGTGCTTGTAGAAA+CGG 0.437088 8:+77630012 MsG0880046748.01.T01:CDS
AACTGCAGCATCAGCTTCAA+TGG 0.437500 8:-77631810 None:intergenic
TTAGAGGTTGGAATATCATA+TGG 0.441570 8:-77629829 None:intergenic
AACTGCAGCTTCAGCTTCAA+TGG 0.441715 8:-77631834 None:intergenic
TTGCGGCGGTGACATCTTAG+AGG 0.444480 8:-77629845 None:intergenic
CCAAGTATACGCTTCTTAGT+TGG 0.448187 8:-77631881 None:intergenic
TAACGATGATCGGCTGCAGC+TGG 0.448905 8:+77630113 MsG0880046748.01.T01:CDS
CACCGTAAATTCGATTGATC+TGG 0.457971 8:-77631916 None:intergenic
TGTGCAAGCATTATTGCAAT+GGG 0.460308 8:+77630178 MsG0880046748.01.T01:CDS
TCGGCTGCAGCTGGAAAATC+GGG 0.462737 8:+77630122 MsG0880046748.01.T01:CDS
CTCTTTGCTCATGGTGAAGA+AGG 0.463092 8:+77630426 MsG0880046748.01.T01:CDS
CTGATCTGTTTGATTGAGGA+AGG 0.475163 8:-77629951 None:intergenic
AATATACACTTATCTCCATA+TGG 0.477192 8:-77630210 None:intergenic
TGCAAATTACAGTGTTTGAA+TGG 0.480425 8:+77630577 MsG0880046748.01.T01:CDS
GAGACAGGATATTGTTCCTA+TGG 0.480467 8:+77630393 MsG0880046748.01.T01:CDS
GATTGAGGAAGGGTCATCCT+TGG 0.496966 8:-77629940 None:intergenic
CTTGGAGGAGGGCATATCAA+TGG 0.505795 8:-77629922 None:intergenic
AGCTTCTGCGAATTTGGTGG+TGG 0.508361 8:-77630078 None:intergenic
CTAATAATTTGGAAGGCAGC+AGG 0.521839 8:+77630310 MsG0880046748.01.T01:CDS
AGGAGGGCATATCAATGGAT+TGG 0.527979 8:-77629917 None:intergenic
CCAAATTCGCAGAAGCTAGT+TGG 0.528628 8:+77630084 MsG0880046748.01.T01:CDS
GGAAGGGTCATCCTTGGAGG+AGG 0.531078 8:-77629934 None:intergenic
TATTCATTCCTAAACTGTGC+AGG 0.531321 8:-77630246 None:intergenic
CTGTGCAAGCATTATTGCAA+TGG 0.534714 8:+77630177 MsG0880046748.01.T01:CDS
TGTCGCAATTGGAAGGAGAC+AGG 0.541370 8:+77630378 MsG0880046748.01.T01:CDS
ACTAGCTTCTGCGAATTTGG+TGG 0.541605 8:-77630081 None:intergenic
GGAATGTGAACCAACAAGCA+AGG 0.543082 8:+77630331 MsG0880046748.01.T01:CDS
ATTGAAACTAATAATTTGGA+AGG 0.547647 8:+77630303 MsG0880046748.01.T01:CDS
GAACAACAATGACTTCAAAA+GGG 0.550138 8:+77629879 MsG0880046748.01.T01:CDS
AAAGAGACAGTTCTTTCCAT+AGG 0.554060 8:-77630409 None:intergenic
TGAGGAAGGGTCATCCTTGG+AGG 0.556539 8:-77629937 None:intergenic
CATTGATATGCCCTCCTCCA+AGG 0.556864 8:+77629923 MsG0880046748.01.T01:CDS
GGCGGTGACATCTTAGAGGT+TGG 0.560713 8:-77629841 None:intergenic
TTGGTCCGTGTAACGATGAT+CGG 0.560743 8:+77630103 MsG0880046748.01.T01:CDS
AACAATGACTTCAAAAGGGA+AGG 0.561307 8:+77629883 MsG0880046748.01.T01:CDS
TGGTCTGATCTGTTTGATTG+AGG 0.566957 8:-77629955 None:intergenic
GAATGTGAACCAACAAGCAA+GGG 0.570005 8:+77630332 MsG0880046748.01.T01:CDS
AAGAACTGTCTCTTTGCTCA+TGG 0.580294 8:+77630417 MsG0880046748.01.T01:CDS
AATGGGGAGGAATGTCCATA+TGG 0.583975 8:+77630195 MsG0880046748.01.T01:CDS
TCAGCTTCAATGGCTCCACC+AGG 0.589035 8:-77631800 None:intergenic
TAAACTGTGTCGCAATTGGA+AGG 0.596328 8:+77630371 MsG0880046748.01.T01:CDS
ACTGTGCAGGATCTTCATGA+AGG 0.599205 8:-77630233 None:intergenic
AGCTGCAGTTGCCATAGCAA+AGG 0.610083 8:+77631847 MsG0880046748.01.T01:CDS
TGATCTGTTTGATTGAGGAA+GGG 0.618914 8:-77629950 None:intergenic
GAAGGGTCATCCTTGGAGGA+GGG 0.622595 8:-77629933 None:intergenic
AATATCATATGGAAAAGCCA+TGG 0.637338 8:-77629818 None:intergenic
CAACTAAGAAGCGTATACTT+GGG 0.638379 8:+77631882 MsG0880046748.01.T01:CDS
TTGTTCAATGAAGTGAATTG+CGG 0.641834 8:-77629862 None:intergenic
TTCAATGAAGTGAATTGCGG+CGG 0.657596 8:-77629859 None:intergenic
CAAGCATTATTGCAATGGGG+AGG 0.662472 8:+77630182 MsG0880046748.01.T01:CDS
AATGTGAACCAACAAGCAAG+GGG 0.663605 8:+77630333 MsG0880046748.01.T01:CDS
TGCAGCCGATCATCGTTACA+CGG 0.666217 8:-77630108 None:intergenic
TCAGAGTTACAAGTTCCTGG+TGG 0.718686 8:+77631785 MsG0880046748.01.T01:intron
GTGCAAGCATTATTGCAATG+GGG 0.746686 8:+77630179 MsG0880046748.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTTTGATTATTTGTTT+CGG + Chr8:77630458-77630477 MsG0880046748.01.T01:intron 15.0%
!!! CAAGAGTTTTTTTAAATATA+AGG - Chr8:77631630-77631649 None:intergenic 15.0%
!! AACCATTGAAACTAATAATT+TGG + Chr8:77630299-77630318 MsG0880046748.01.T01:CDS 20.0%
!! AATATCAAAAAGTCATACAA+AGG + Chr8:77630148-77630167 MsG0880046748.01.T01:CDS 20.0%
!! ATTGAAACTAATAATTTGGA+AGG + Chr8:77630303-77630322 MsG0880046748.01.T01:CDS 20.0%
!!! GTTTTGTACTAAATAAAGTT+TGG + Chr8:77631098-77631117 MsG0880046748.01.T01:intron 20.0%
!!! TTCCAAATTATTAGTTTCAA+TGG - Chr8:77630304-77630323 None:intergenic 20.0%
! AAAAATCTGGCATATAAACA+TGG - Chr8:77630930-77630949 None:intergenic 25.0%
! AAGTTATCATAAGCAAAATG+CGG - Chr8:77630969-77630988 None:intergenic 25.0%
! AATATACACTTATCTCCATA+TGG - Chr8:77630213-77630232 None:intergenic 25.0%
! AATGATCCATTAGAATAAAG+AGG - Chr8:77631261-77631280 None:intergenic 25.0%
! AATGGATCATTACTATTGTA+TGG + Chr8:77631270-77631289 MsG0880046748.01.T01:intron 25.0%
! ATCAAATTTCTGCCATAAAT+GGG + Chr8:77630819-77630838 MsG0880046748.01.T01:intron 25.0%
! ATGATCCATTAGAATAAAGA+GGG - Chr8:77631260-77631279 None:intergenic 25.0%
! ATTTGTACTAAGTTCAGATT+TGG + Chr8:77629997-77630016 MsG0880046748.01.T01:CDS 25.0%
! TATAAAAATTCCTGACAATG+CGG - Chr8:77631195-77631214 None:intergenic 25.0%
! TATCAAATTTCTGCCATAAA+TGG + Chr8:77630818-77630837 MsG0880046748.01.T01:intron 25.0%
! TCTTAACAAATGTAAAACTG+TGG - Chr8:77631320-77631339 None:intergenic 25.0%
! TGATCATTAATCATACATGA+AGG - Chr8:77630784-77630803 None:intergenic 25.0%
!! ACTTTAAGAAGAAACAAAGT+TGG - Chr8:77631415-77631434 None:intergenic 25.0%
!! TGACATGAACAATAATTTTG+AGG + Chr8:77631467-77631486 MsG0880046748.01.T01:intron 25.0%
!! TTTGTGTTTTGTAGAAAATG+TGG - Chr8:77629978-77629997 None:intergenic 25.0%
!!! TACTAGAATTTGTTGTAGTT+TGG + Chr8:77631340-77631359 MsG0880046748.01.T01:intron 25.0%
ATGTCAGACATCAAATTTGT+AGG - Chr8:77631453-77631472 None:intergenic 30.0%
GAACAACAATGACTTCAAAA+GGG + Chr8:77629879-77629898 MsG0880046748.01.T01:CDS 30.0%
GATGAACATAATACAATAGC+TGG - Chr8:77631388-77631407 None:intergenic 30.0%
TATACCATGACTATTATACC+CGG + Chr8:77630879-77630898 MsG0880046748.01.T01:intron 30.0%
TGAACAACAATGACTTCAAA+AGG + Chr8:77629878-77629897 MsG0880046748.01.T01:CDS 30.0%
TGATCCATTAGAATAAAGAG+GGG - Chr8:77631259-77631278 None:intergenic 30.0%
TGCAAATTACAGTGTTTGAA+TGG + Chr8:77630577-77630596 MsG0880046748.01.T01:CDS 30.0%
TGTGTATGATGTTTCATGTT+TGG + Chr8:77630632-77630651 MsG0880046748.01.T01:intron 30.0%
TTAAAACAACTGCAACTGTT+TGG + Chr8:77631714-77631733 MsG0880046748.01.T01:intron 30.0%
TTAGAGGTTGGAATATCATA+TGG - Chr8:77629832-77629851 None:intergenic 30.0%
TTGTTCAATGAAGTGAATTG+CGG - Chr8:77629865-77629884 None:intergenic 30.0%
! ATGATTCCATCCTTGTTTAT+AGG + Chr8:77630738-77630757 MsG0880046748.01.T01:intron 30.0%
! ATGGCAGAAATTTGATAACA+AGG - Chr8:77630815-77630834 None:intergenic 30.0%
! ATTTTCCATTCAGAACCTTA+GGG - Chr8:77630720-77630739 None:intergenic 30.0%
AAAGAGACAGTTCTTTCCAT+AGG - Chr8:77630412-77630431 None:intergenic 35.0%
AAATCAGAGTTACAAGTTCC+TGG + Chr8:77631782-77631801 MsG0880046748.01.T01:intron 35.0%
AACAATGACTTCAAAAGGGA+AGG + Chr8:77629883-77629902 MsG0880046748.01.T01:CDS 35.0%
AGCCAGATCAATCGAATTTA+CGG + Chr8:77631914-77631933 MsG0880046748.01.T01:CDS 35.0%
AGGAGTCAGAACAATATACA+TGG - Chr8:77631743-77631762 None:intergenic 35.0%
CATATTTGACCCCAATATTG+AGG - Chr8:77631538-77631557 None:intergenic 35.0%
CGCATTTAGTTGAAGAGATA+AGG + Chr8:77630052-77630071 MsG0880046748.01.T01:CDS 35.0%
CTCAATATTGGGGTCAAATA+TGG + Chr8:77631536-77631555 MsG0880046748.01.T01:intron 35.0%
GATCCATTAGAATAAAGAGG+GGG - Chr8:77631258-77631277 None:intergenic 35.0%
TAACCCCCTCTTTATTCTAA+TGG + Chr8:77631252-77631271 MsG0880046748.01.T01:intron 35.0%
TATTCATTCCTAAACTGTGC+AGG - Chr8:77630249-77630268 None:intergenic 35.0%
TCAATCGAATTTACGGTGAT+TGG + Chr8:77631921-77631940 MsG0880046748.01.T01:CDS 35.0%
TGATCTGTTTGATTGAGGAA+GGG - Chr8:77629953-77629972 None:intergenic 35.0%
TGTGCAAGCATTATTGCAAT+GGG + Chr8:77630178-77630197 MsG0880046748.01.T01:CDS 35.0%
! AAAATGCGGATTAAGGTATC+TGG - Chr8:77630955-77630974 None:intergenic 35.0%
! AGGTACATTTTTGCAAGACA+AGG - Chr8:77630697-77630716 None:intergenic 35.0%
! ATGTTGTTAATTGCTGTTCG+CGG + Chr8:77631011-77631030 MsG0880046748.01.T01:intron 35.0%
! ATTTTTGCAAGACAAGGCAA+TGG - Chr8:77630691-77630710 None:intergenic 35.0%
! CAACTAAGAAGCGTATACTT+GGG + Chr8:77631882-77631901 MsG0880046748.01.T01:CDS 35.0%
! CATAAGCAAAATGCGGATTA+AGG - Chr8:77630962-77630981 None:intergenic 35.0%
! CATTTTCCATTCAGAACCTT+AGG - Chr8:77630721-77630740 None:intergenic 35.0%
! TTTTTGCAAGACAAGGCAAT+GGG - Chr8:77630690-77630709 None:intergenic 35.0%
!! AGATTTGGTGCTTGTAGAAA+CGG + Chr8:77630012-77630031 MsG0880046748.01.T01:CDS 35.0%
AAGAACTGTCTCTTTGCTCA+TGG + Chr8:77630417-77630436 MsG0880046748.01.T01:CDS 40.0%
AATGTGAACCAACAAGCAAG+GGG + Chr8:77630333-77630352 MsG0880046748.01.T01:CDS 40.0%
ACCTGCTATGCCTATAAACA+AGG - Chr8:77630751-77630770 None:intergenic 40.0%
AGACTAAACTGTGTCGCAAT+TGG + Chr8:77630367-77630386 MsG0880046748.01.T01:CDS 40.0%
ATGAAGATCCTGCACAGTTT+AGG + Chr8:77630238-77630257 MsG0880046748.01.T01:CDS 40.0%
CACCGTAAATTCGATTGATC+TGG - Chr8:77631919-77631938 None:intergenic 40.0%
CCAAGTATACGCTTCTTAGT+TGG - Chr8:77631884-77631903 None:intergenic 40.0%
CTAATAATTTGGAAGGCAGC+AGG + Chr8:77630310-77630329 MsG0880046748.01.T01:CDS 40.0%
CTGATCTGTTTGATTGAGGA+AGG - Chr8:77629954-77629973 None:intergenic 40.0%
CTGTGCAAGCATTATTGCAA+TGG + Chr8:77630177-77630196 MsG0880046748.01.T01:CDS 40.0%
GAATGTGAACCAACAAGCAA+GGG + Chr8:77630332-77630351 MsG0880046748.01.T01:CDS 40.0%
GAGACAGGATATTGTTCCTA+TGG + Chr8:77630393-77630412 MsG0880046748.01.T01:CDS 40.0%
GCTATGCCTATAAACAAGGA+TGG - Chr8:77630747-77630766 None:intergenic 40.0%
GTGCAAGCATTATTGCAATG+GGG + Chr8:77630179-77630198 MsG0880046748.01.T01:CDS 40.0%
TAAACTGTGTCGCAATTGGA+AGG + Chr8:77630371-77630390 MsG0880046748.01.T01:CDS 40.0%
TGCAAAAATGTACCTCCCTA+AGG + Chr8:77630702-77630721 MsG0880046748.01.T01:intron 40.0%
TGGTCTGATCTGTTTGATTG+AGG - Chr8:77629958-77629977 None:intergenic 40.0%
TGTTCTGACTCCTGAAGTAT+CGG + Chr8:77631750-77631769 MsG0880046748.01.T01:intron 40.0%
TTCAATGAAGTGAATTGCGG+CGG - Chr8:77629862-77629881 None:intergenic 40.0%
! AAGGTATCTGGCGAAAAATC+TGG - Chr8:77630943-77630962 None:intergenic 40.0%
! CCAACTAAGAAGCGTATACT+TGG + Chr8:77631881-77631900 MsG0880046748.01.T01:CDS 40.0%
! GAAGCACTCTCTTGATTTCA+AGG - Chr8:77630274-77630293 None:intergenic 40.0%
! TCCTTGTTTATAGGCATAGC+AGG + Chr8:77630747-77630766 MsG0880046748.01.T01:intron 40.0%
AACTGCAGCATCAGCTTCAA+TGG - Chr8:77631813-77631832 None:intergenic 45.0%
AACTGCAGCTTCAGCTTCAA+TGG - Chr8:77631837-77631856 None:intergenic 45.0%
AAGGCAATGGGACAACAAGT+AGG - Chr8:77630678-77630697 None:intergenic 45.0%
AATGGGGAGGAATGTCCATA+TGG + Chr8:77630195-77630214 MsG0880046748.01.T01:CDS 45.0%
ACTGTGCAGGATCTTCATGA+AGG - Chr8:77630236-77630255 None:intergenic 45.0%
ATGCCGCGATCCTCAATATT+GGG + Chr8:77631525-77631544 MsG0880046748.01.T01:intron 45.0%
ATTCCTGACAATGCGGTTGA+CGG - Chr8:77631188-77631207 None:intergenic 45.0%
CAAGCATTATTGCAATGGGG+AGG + Chr8:77630182-77630201 MsG0880046748.01.T01:CDS 45.0%
CAAGCCGGGTATAATAGTCA+TGG - Chr8:77630886-77630905 None:intergenic 45.0%
CCAAATTCGCAGAAGCTAGT+TGG + Chr8:77630084-77630103 MsG0880046748.01.T01:CDS 45.0%
CTCTTTGCTCATGGTGAAGA+AGG + Chr8:77630426-77630445 MsG0880046748.01.T01:CDS 45.0%
GGAATGTGAACCAACAAGCA+AGG + Chr8:77630331-77630350 MsG0880046748.01.T01:CDS 45.0%
GGCATATAAACATGGAGCTG+CGG - Chr8:77630922-77630941 None:intergenic 45.0%
TCAGAGTTACAAGTTCCTGG+TGG + Chr8:77631785-77631804 MsG0880046748.01.T01:intron 45.0%
TGCAAGACAACCGATACTTC+AGG - Chr8:77631763-77631782 None:intergenic 45.0%
TTCCATTCAGAACCTTAGGG+AGG - Chr8:77630717-77630736 None:intergenic 45.0%
TTGGTCCGTGTAACGATGAT+CGG + Chr8:77630103-77630122 MsG0880046748.01.T01:CDS 45.0%
! ACTAGCTTCTGCGAATTTGG+TGG - Chr8:77630084-77630103 None:intergenic 45.0%
! AGGAGGGCATATCAATGGAT+TGG - Chr8:77629920-77629939 None:intergenic 45.0%
! CCAACTAGCTTCTGCGAATT+TGG - Chr8:77630087-77630106 None:intergenic 45.0%
! TTGCTGTTCGCGGAAAAATG+TGG + Chr8:77631021-77631040 MsG0880046748.01.T01:intron 45.0%
!! AACAAGCAAGGGGCACTTAT+CGG + Chr8:77630343-77630362 MsG0880046748.01.T01:CDS 45.0%
!! TACCTCCCTAAGGTTCTGAA+TGG + Chr8:77630712-77630731 MsG0880046748.01.T01:intron 45.0%
!! TTTCTGCCATAAATGGGCTG+TGG + Chr8:77630825-77630844 MsG0880046748.01.T01:intron 45.0%
AAACATGGAGCTGCGGCATA+TGG - Chr8:77630915-77630934 None:intergenic 50.0%
AGCTGCAGTTGCCATAGCAA+AGG + Chr8:77631847-77631866 MsG0880046748.01.T01:CDS 50.0%
ATCGGCTGCAGCTGGAAAAT+CGG + Chr8:77630121-77630140 MsG0880046748.01.T01:CDS 50.0%
CAATATTGAGGATCGCGGCA+TGG - Chr8:77631526-77631545 None:intergenic 50.0%
CATGCCGCGATCCTCAATAT+TGG + Chr8:77631524-77631543 MsG0880046748.01.T01:intron 50.0%
CATTGATATGCCCTCCTCCA+AGG + Chr8:77629923-77629942 MsG0880046748.01.T01:CDS 50.0%
CCTATAGCACTATCGCAGAG+CGG - Chr8:77631059-77631078 None:intergenic 50.0%
CTGCTGCTCTTCCTTTGCTA+TGG - Chr8:77631861-77631880 None:intergenic 50.0%
GACCCCAATATTGAGGATCG+CGG - Chr8:77631531-77631550 None:intergenic 50.0%
GATAAGTGCCCCTTGCTTGT+TGG - Chr8:77630344-77630363 None:intergenic 50.0%
GATTGAGGAAGGGTCATCCT+TGG - Chr8:77629943-77629962 None:intergenic 50.0%
GCAATGGGACAACAAGTAGG+AGG - Chr8:77630675-77630694 None:intergenic 50.0%
TGCAGCCGATCATCGTTACA+CGG - Chr8:77630111-77630130 None:intergenic 50.0%
TGCCGCGATCCTCAATATTG+GGG + Chr8:77631526-77631545 MsG0880046748.01.T01:intron 50.0%
TGTCGCAATTGGAAGGAGAC+AGG + Chr8:77630378-77630397 MsG0880046748.01.T01:CDS 50.0%
TTCCTGACAATGCGGTTGAC+GGG - Chr8:77631187-77631206 None:intergenic 50.0%
! AGCTTCTGCGAATTTGGTGG+TGG - Chr8:77630081-77630100 None:intergenic 50.0%
! CTTGGAGGAGGGCATATCAA+TGG - Chr8:77629925-77629944 None:intergenic 50.0%
! GCATATGGTGGAAACAAGCC+GGG - Chr8:77630900-77630919 None:intergenic 50.0%
! GGCATATGGTGGAAACAAGC+CGG - Chr8:77630901-77630920 None:intergenic 50.0%
!! ATAAATGGGCTGTGGCATGG+CGG + Chr8:77630833-77630852 MsG0880046748.01.T01:intron 50.0%
!! ATGGCGGACTTTGTGCTAGT+CGG + Chr8:77630849-77630868 MsG0880046748.01.T01:intron 50.0%
AAGGTCTGCGACCATGACTG+TGG - Chr8:77631611-77631630 None:intergenic 55.0%
CCGCTCTGCGATAGTGCTAT+AGG + Chr8:77631056-77631075 MsG0880046748.01.T01:intron 55.0%
GAAGGGTCATCCTTGGAGGA+GGG - Chr8:77629936-77629955 None:intergenic 55.0%
GCCATGCCACAGCCCATTTA+TGG - Chr8:77630834-77630853 None:intergenic 55.0%
GGCGGTGACATCTTAGAGGT+TGG - Chr8:77629844-77629863 None:intergenic 55.0%
TAACGATGATCGGCTGCAGC+TGG + Chr8:77630113-77630132 MsG0880046748.01.T01:CDS 55.0%
TCAGCTTCAATGGCTCCACC+AGG - Chr8:77631803-77631822 None:intergenic 55.0%
TCGGCTGCAGCTGGAAAATC+GGG + Chr8:77630122-77630141 MsG0880046748.01.T01:CDS 55.0%
TCTCAGCCACACCACAGTCA+TGG + Chr8:77631597-77631616 MsG0880046748.01.T01:intron 55.0%
TGAGGAAGGGTCATCCTTGG+AGG - Chr8:77629940-77629959 None:intergenic 55.0%
TTCCCGTCAACCGCATTGTC+AGG + Chr8:77631182-77631201 MsG0880046748.01.T01:intron 55.0%
TTGCGGCGGTGACATCTTAG+AGG - Chr8:77629848-77629867 None:intergenic 55.0%
!! GCCATAAATGGGCTGTGGCA+TGG + Chr8:77630830-77630849 MsG0880046748.01.T01:intron 55.0%
CATGGAGCTGCGGCATATGG+TGG - Chr8:77630912-77630931 None:intergenic 60.0%
CTGCGACCATGACTGTGGTG+TGG - Chr8:77631606-77631625 None:intergenic 60.0%
GGAAGGGTCATCCTTGGAGG+AGG - Chr8:77629937-77629956 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 77629820 77631955 77629820 ID=MsG0880046748.01;Name=MsG0880046748.01
Chr8 mRNA 77629820 77631955 77629820 ID=MsG0880046748.01.T01;Parent=MsG0880046748.01;Name=MsG0880046748.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|1|1|3|0|283
Chr8 exon 77629820 77630447 77629820 ID=MsG0880046748.01.T01:exon:33204;Parent=MsG0880046748.01.T01
Chr8 exon 77630542 77630598 77630542 ID=MsG0880046748.01.T01:exon:33205;Parent=MsG0880046748.01.T01
Chr8 exon 77631789 77631955 77631789 ID=MsG0880046748.01.T01:exon:33206;Parent=MsG0880046748.01.T01
Chr8 CDS 77629820 77630447 77629820 ID=MsG0880046748.01.T01:cds;Parent=MsG0880046748.01.T01
Chr8 CDS 77630542 77630598 77630542 ID=MsG0880046748.01.T01:cds;Parent=MsG0880046748.01.T01
Chr8 CDS 77631789 77631955 77631789 ID=MsG0880046748.01.T01:cds;Parent=MsG0880046748.01.T01
Gene Sequence

>MsG0880046748.01.T01

ATGGCTTTTCCATATGATATTCCAACCTCTAAGATGTCACCGCCGCAATTCACTTCATTGAACAACAATGACTTCAAAAGGGAAGGAACTTCTCATTCCAATCCATTGATATGCCCTCCTCCAAGGATGACCCTTCCTCAATCAAACAGATCAGACCACATTTTCTACAAAACACAAATTTGTACTAAGTTCAGATTTGGTGCTTGTAGAAACGGAAATAATTGCAACTTTGCGCATTTAGTTGAAGAGATAAGGCAACCACCACCAAATTCGCAGAAGCTAGTTGGTCCGTGTAACGATGATCGGCTGCAGCTGGAAAATCGGGCTGAATATCAAAAAGTCATACAAAGGATGAAACTGTGCAAGCATTATTGCAATGGGGAGGAATGTCCATATGGAGATAAGTGTATATTCCTTCATGAAGATCCTGCACAGTTTAGGAATGAATATTCCTTGAAATCAAGAGAGTGCTTCGCAATAACCATTGAAACTAATAATTTGGAAGGCAGCAGGAATGTGAACCAACAAGCAAGGGGCACTTATCGGAAGACTAAACTGTGTCGCAATTGGAAGGAGACAGGATATTGTTCCTATGGAAAGAACTGTCTCTTTGCTCATGGTGAAGAAGATGCTGTGTATAATGTCATTTTCTGTGATATGATGTGCAAATTACAGTGTTTGAATGAGTTACAAGTTCCTGGTGGAGCCATTGAAGCTGATGCTGCAGTTGCCATTGAAGCTGAAGCTGCAGTTGCCATAGCAAAGGAAGAGCAGCAGCCAACTAAGAAGCGTATACTTGGGCTGAAATTCAGCCAGATCAATCGAATTTACGGTGATTGGATTGATGATTGA
Protein sequence

>MsG0880046748.01.T01

MAFPYDIPTSKMSPPQFTSLNNNDFKREGTSHSNPLICPPPRMTLPQSNRSDHIFYKTQICTKFRFGACRNGNNCNFAHLVEEIRQPPPNSQKLVGPCNDDRLQLENRAEYQKVIQRMKLCKHYCNGEECPYGDKCIFLHEDPAQFRNEYSLKSRECFAITIETNNLEGSRNVNQQARGTYRKTKLCRNWKETGYCSYGKNCLFAHGEEDAVYNVIFCDMMCKLQCLNELQVPGGAIEADAAVAIEAEAAVAIAKEEQQPTKKRILGLKFSQINRIYGDWIDD*