AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047031.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047031.01.T01 MTR_4g119580 93.617 376 23 1 1 375 1 376 0.0 689
MsG0880047031.01.T01 MTR_4g120380 70.027 377 100 3 1 370 1 371 0.0 521
MsG0880047031.01.T01 MTR_4g120380 70.225 356 93 3 1 349 1 350 1.22e-174 493
MsG0880047031.01.T01 MTR_4g119550 49.541 327 164 1 44 369 52 378 6.23e-111 330
MsG0880047031.01.T01 MTR_2g436460 48.795 332 169 1 38 368 42 373 6.28e-109 324
MsG0880047031.01.T01 MTR_2g437260 45.906 342 183 1 30 369 23 364 3.46e-107 320
MsG0880047031.01.T01 MTR_2g437040 46.903 339 176 2 33 369 32 368 1.11e-106 318
MsG0880047031.01.T01 MTR_2g437170 46.348 356 184 3 21 369 33 388 2.10e-103 311
MsG0880047031.01.T01 MTR_4g119570 61.905 252 63 1 120 371 13 231 2.33e-103 305
MsG0880047031.01.T01 MTR_2g437150 46.857 350 179 3 27 369 39 388 5.69e-103 310
MsG0880047031.01.T01 MTR_2g437080 44.086 372 201 4 1 369 1 368 2.76e-102 307
MsG0880047031.01.T01 MTR_2g437120 46.667 345 170 4 34 369 42 381 4.99e-102 308
MsG0880047031.01.T01 MTR_2g437960 47.273 330 169 3 45 369 55 384 3.66e-101 305
MsG0880047031.01.T01 MTR_2g437130 44.751 362 198 1 10 369 8 369 4.14e-101 305
MsG0880047031.01.T01 MTR_2g437020 47.384 344 172 5 31 369 29 368 4.29e-101 304
MsG0880047031.01.T01 MTR_2g437960 47.273 330 169 3 45 369 55 384 6.79e-101 305
MsG0880047031.01.T01 MTR_2g437100 48.795 332 163 3 45 369 62 393 6.81e-101 305
MsG0880047031.01.T01 MTR_2g437030 44.444 378 203 3 1 371 79 456 1.03e-100 306
MsG0880047031.01.T01 MTR_2g437200 43.733 375 173 2 33 369 22 396 4.78e-100 302
MsG0880047031.01.T01 MTR_2g436440 45.614 342 182 2 30 369 35 374 1.33e-98 298
MsG0880047031.01.T01 MTR_2g437160 46.313 339 178 2 35 369 55 393 1.56e-98 299
MsG0880047031.01.T01 MTR_2g436400 43.440 343 192 1 29 369 33 375 3.99e-98 296
MsG0880047031.01.T01 MTR_2g438010 45.161 341 182 2 34 369 61 401 3.96e-97 295
MsG0880047031.01.T01 MTR_2g437240 43.272 379 173 3 32 372 25 399 5.93e-97 295
MsG0880047031.01.T01 MTR_2g437060 43.675 332 185 1 40 369 52 383 2.43e-95 290
MsG0880047031.01.T01 MTR_2g437990 44.575 341 181 3 34 368 41 379 4.63e-94 288
MsG0880047031.01.T01 MTR_2g076320 43.314 344 182 3 34 368 41 380 2.16e-93 285
MsG0880047031.01.T01 MTR_2g437180 44.985 329 174 3 45 368 51 377 3.03e-91 280
MsG0880047031.01.T01 MTR_2g438020 42.700 363 170 2 45 369 73 435 3.44e-90 280
MsG0880047031.01.T01 MTR_2g437940 42.813 327 160 4 45 369 51 352 7.15e-85 263
MsG0880047031.01.T01 MTR_2g019810 42.042 333 179 4 44 369 32 357 3.33e-80 250
MsG0880047031.01.T01 MTR_2g019840 41.317 334 192 3 38 369 38 369 2.06e-78 246
MsG0880047031.01.T01 MTR_3g450500 33.243 367 229 5 22 373 9 374 1.20e-57 192
MsG0880047031.01.T01 MTR_4g007490 33.240 358 228 5 21 369 13 368 1.58e-55 187
MsG0880047031.01.T01 MTR_2g437090 53.947 152 70 0 218 369 5 156 3.90e-53 174
MsG0880047031.01.T01 MTR_2g437160 48.824 170 87 0 200 369 133 302 2.12e-50 172
MsG0880047031.01.T01 MTR_2g437160 47.126 87 44 1 35 119 55 141 4.70e-16 78.6
MsG0880047031.01.T01 MTR_8g080990 29.032 341 232 4 38 371 37 374 2.89e-38 141
MsG0880047031.01.T01 MTR_8g081000 27.485 342 244 3 38 375 50 391 8.20e-38 140
MsG0880047031.01.T01 MTR_8g081000 27.485 342 244 3 38 375 50 391 8.41e-38 140
MsG0880047031.01.T01 MTR_8g081000 27.515 338 241 3 38 371 50 387 1.37e-37 139
MsG0880047031.01.T01 MTR_2g436370 38.953 172 101 2 23 190 24 195 4.87e-31 117
MsG0880047031.01.T01 MTR_4g119615 94.000 50 3 0 313 362 26 75 5.87e-24 95.1
MsG0880047031.01.T01 MTR_3g085240 36.552 145 80 3 19 163 38 170 3.06e-16 78.2
MsG0880047031.01.T01 MTR_2g034600 27.273 275 176 7 80 340 215 479 4.49e-16 80.1
MsG0880047031.01.T01 MTR_2g034600 27.273 275 176 7 80 340 280 544 6.08e-16 79.7
MsG0880047031.01.T01 MTR_2g034600 27.273 275 176 7 80 340 276 540 6.15e-16 79.7
MsG0880047031.01.T01 MTR_3g092710 24.409 254 171 6 89 322 217 469 4.69e-14 73.9
MsG0880047031.01.T01 MTR_4g049400 36.842 114 68 2 33 142 38 151 3.89e-13 68.9
MsG0880047031.01.T01 MTR_8g012210 22.789 294 208 8 87 369 63 348 5.77e-13 69.7
MsG0880047031.01.T01 MTR_2g436380 33.628 113 68 3 216 328 3 108 3.46e-12 66.6
MsG0880047031.01.T01 MTR_2g019830 56.667 60 25 1 310 369 139 197 2.33e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047031.01.T01 AT5G07900 34.024 338 207 5 44 370 69 401 7.75e-62 204
MsG0880047031.01.T01 AT1G21150 31.212 330 219 4 44 366 56 384 1.41e-46 164
MsG0880047031.01.T01 AT1G21150 31.212 330 219 4 44 366 120 448 5.97e-46 163
MsG0880047031.01.T01 AT1G21150 30.030 333 225 4 41 366 17 348 8.23e-45 158
MsG0880047031.01.T01 AT1G61980 28.338 367 222 7 44 370 52 417 8.02e-43 154
MsG0880047031.01.T01 AT1G61980 28.338 367 222 7 44 370 52 417 8.02e-43 154
MsG0880047031.01.T01 AT1G61980 28.338 367 222 7 44 370 52 417 8.02e-43 154
MsG0880047031.01.T01 AT1G61970 26.500 400 243 10 1 354 5 399 1.03e-36 138
MsG0880047031.01.T01 AT1G61970 26.500 400 243 10 1 354 5 399 1.03e-36 138
MsG0880047031.01.T01 AT1G61970 26.500 400 243 10 1 354 5 399 1.03e-36 138
MsG0880047031.01.T01 AT1G61970 26.500 400 243 10 1 354 5 399 1.03e-36 138
MsG0880047031.01.T01 AT1G61970 26.500 400 243 10 1 354 5 399 1.03e-36 138
MsG0880047031.01.T01 AT1G61970 26.500 400 243 10 1 354 5 399 1.03e-36 138
MsG0880047031.01.T01 AT1G61970 26.500 400 243 10 1 354 5 399 1.03e-36 138
MsG0880047031.01.T01 AT1G62120 27.297 370 226 8 44 371 56 424 3.84e-36 137
MsG0880047031.01.T01 AT1G61990 27.473 364 218 7 44 368 52 408 8.11e-34 130
MsG0880047031.01.T01 AT1G61990 27.473 364 218 7 44 368 52 408 8.11e-34 130
MsG0880047031.01.T01 AT1G61960 24.670 454 256 10 5 374 6 457 4.66e-31 123
MsG0880047031.01.T01 AT1G62150 25.255 392 217 8 44 360 58 448 6.87e-30 120
MsG0880047031.01.T01 AT5G64950 28.739 341 228 7 42 369 38 376 1.05e-29 118
MsG0880047031.01.T01 AT3G46950 30.196 255 170 5 33 283 38 288 8.16e-27 111
MsG0880047031.01.T01 AT1G62110 28.340 247 174 2 44 287 52 298 2.27e-25 107
MsG0880047031.01.T01 AT1G62110 32.000 100 64 1 259 354 340 439 6.41e-11 63.9
MsG0880047031.01.T01 AT1G62085 30.453 243 166 2 44 283 55 297 3.51e-25 106
MsG0880047031.01.T01 AT1G62085 30.453 243 166 2 44 283 55 297 3.51e-25 106
MsG0880047031.01.T01 AT1G62010 24.024 333 212 6 77 370 71 401 7.06e-25 105
MsG0880047031.01.T01 AT1G56380 24.658 365 225 9 42 360 25 385 4.27e-24 102
MsG0880047031.01.T01 AT1G56380 24.658 365 225 9 42 360 14 374 4.93e-24 102
MsG0880047031.01.T01 AT5G23930 28.369 282 189 7 39 314 50 324 8.07e-21 94.0
MsG0880047031.01.T01 AT4G14605 31.928 166 103 6 171 330 222 383 2.44e-12 68.6
MsG0880047031.01.T01 AT4G14605 31.928 166 103 6 171 330 222 383 2.44e-12 68.6
MsG0880047031.01.T01 AT1G79220 24.232 293 206 7 87 369 91 377 3.93e-11 64.7

Find 85 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAGGAGATTAAGGAATT+AGG 0.197682 8:-81195644 MsG0880047031.01.T01:CDS
TGAAGGAGGTAACTACATTT+TGG 0.211721 8:+81196256 None:intergenic
ATCAAGCAAGAATTTCAAAT+TGG 0.217026 8:+81195748 None:intergenic
GGAGGCTGTGGAGGAGATTA+AGG 0.222304 8:-81195651 MsG0880047031.01.T01:CDS
AAATTGAAGCTTTGGCAAAA+TGG 0.249268 8:+81195964 None:intergenic
AACTCATCCTTCAAATAAAA+TGG 0.264656 8:+81195275 None:intergenic
TTGGCTATTAAAGTTATATC+AGG 0.283508 8:-81195210 MsG0880047031.01.T01:CDS
TGGAGGAGATTAAGGAATTA+GGG 0.290150 8:-81195643 MsG0880047031.01.T01:CDS
AACGATTCACATACCTTTGC+AGG 0.292723 8:+81195249 None:intergenic
TGTAGCATTGTTGGCCAAAA+AGG 0.301284 8:-81195594 MsG0880047031.01.T01:CDS
TTGAAATTCTTGCTTGATAC+TGG 0.309108 8:-81195743 MsG0880047031.01.T01:CDS
TCCTACCTCACTAACAATTT+CGG 0.319551 8:-81196154 MsG0880047031.01.T01:CDS
ACGAAGGAAACGAGGGTTTC+TGG 0.321312 8:+81195895 None:intergenic
AAGTTGATGCCTTGAAGAAC+TGG 0.332328 8:-81195544 MsG0880047031.01.T01:CDS
CTTTGGCAAAATGGATTTGA+TGG 0.343012 8:+81195973 None:intergenic
ACGGTGATGATTATGTCTTC+TGG 0.353018 8:+81195920 None:intergenic
ATCCTTCTTCATCAAACCTT+TGG 0.363759 8:+81195313 None:intergenic
GGTGCTGCCAGGAGCAATAA+AGG 0.392734 8:+81195404 None:intergenic
TTGGGATCCTTTATTGCTCC+TGG 0.395686 8:-81195411 MsG0880047031.01.T01:CDS
CTTCTTACCAATTCAAAAGT+AGG 0.408654 8:+81195848 None:intergenic
TTGGATCCAACAACTTGGTT+GGG 0.412366 8:-81195429 MsG0880047031.01.T01:CDS
TAACAGTATCGGGTTTCTCC+GGG 0.413469 8:+81196080 None:intergenic
ATAACAGTATCGGGTTTCTC+CGG 0.415002 8:+81196079 None:intergenic
TCAAGCAAGAATTTCAAATT+GGG 0.419573 8:+81195749 None:intergenic
TAACCTTATGCTACGGTCTT+CGG 0.426601 8:-81195477 MsG0880047031.01.T01:CDS
AACCTTTGGAAAGAAGATAC+TGG 0.430985 8:+81195327 None:intergenic
GACGGGATCCCTGCGAATGA+TGG 0.437092 8:+81196012 None:intergenic
AAGGATCCCAACCAAGTTGT+TGG 0.437597 8:+81195423 None:intergenic
ATCAACTTTGGCATCCCATT+GGG 0.443217 8:+81195559 None:intergenic
GTTCTTCAAGGCATCAACTT+TGG 0.447538 8:+81195547 None:intergenic
TTCCAAAGGTTTGATGAAGA+AGG 0.448858 8:-81195315 MsG0880047031.01.T01:CDS
GAAACGAGGGTTTCTGGTTA+CGG 0.455889 8:+81195901 None:intergenic
TGCGAATGATGGATTGTATC+TGG 0.473291 8:+81196023 None:intergenic
AGAATAACCCCAGTTCTTCA+AGG 0.473452 8:+81195535 None:intergenic
CGAAAAGCTCTGGTGCTGCC+AGG 0.473564 8:+81195393 None:intergenic
GGCTATCACTAAATCCCAAT+GGG 0.478420 8:-81195573 MsG0880047031.01.T01:CDS
CATCAACTTTGGCATCCCAT+TGG 0.482441 8:+81195558 None:intergenic
TCGGACTTAGTATAGAGAAA+AGG 0.483597 8:-81195373 MsG0880047031.01.T01:CDS
TGTCCGAAGACCGTAGCATA+AGG 0.485794 8:+81195474 None:intergenic
TTTGGATCCAACAACTTGGT+TGG 0.491206 8:-81195430 MsG0880047031.01.T01:CDS
AGCGGTGTGGTTGCAGATGA+AGG 0.493188 8:+81196239 None:intergenic
TTTCATGCGACCATCACTAA+TGG 0.498728 8:+81195772 None:intergenic
TGAGAAGAGCTCTGAGACGG+TGG 0.502155 8:+81196284 None:intergenic
TTCTTACCAATTCAAAAGTA+GGG 0.509482 8:+81195849 None:intergenic
TGGCTATTAAAGTTATATCA+GGG 0.511825 8:-81195209 MsG0880047031.01.T01:CDS
ATCCAGTATCTTCTTTCCAA+AGG 0.514435 8:-81195329 MsG0880047031.01.T01:CDS
TTTGGCAAAATGGATTTGAT+GGG 0.517742 8:+81195974 None:intergenic
ATACTAAGTCCGAAAAGCTC+TGG 0.524827 8:+81195383 None:intergenic
GAAGACCGTAGCATAAGGTT+AGG 0.532188 8:+81195479 None:intergenic
TGGTTGATCTGAATCTGAAA+TGG 0.533288 8:+81196189 None:intergenic
CGACCATCACTAATGGTAGC+AGG 0.533792 8:+81195779 None:intergenic
TAGAGAAAAGGCTTAGTCCA+AGG 0.534773 8:-81195361 MsG0880047031.01.T01:CDS
GATGGATTGTATCTGGTCAA+TGG 0.537796 8:+81196030 None:intergenic
AAGGTCTGCTTGTAAGCAAA+CGG 0.538087 8:+81195699 None:intergenic
AGATACAATCCATCATTCGC+AGG 0.541336 8:-81196021 MsG0880047031.01.T01:CDS
TACTGGATAACTGAAGCCCT+TGG 0.548630 8:+81195344 None:intergenic
AGTTGATGCCTTGAAGAACT+GGG 0.549779 8:-81195543 MsG0880047031.01.T01:CDS
GCCGAAATTGTTAGTGAGGT+AGG 0.554634 8:+81196153 None:intergenic
TAGGGATAATGTGTTTGTTG+AGG 0.555795 8:+81195867 None:intergenic
TTTCCTGCTACCATTAGTGA+TGG 0.567385 8:-81195782 MsG0880047031.01.T01:CDS
AGGCTATCACTAAATCCCAA+TGG 0.578405 8:-81195574 MsG0880047031.01.T01:CDS
GGGTTTGAGACGAAAACGAC+GGG 0.584914 8:+81195995 None:intergenic
AGGATGAGTTGTTCCTGCAA+AGG 0.601687 8:-81195262 MsG0880047031.01.T01:CDS
AGAGAAAAGGCTTAGTCCAA+GGG 0.604964 8:-81195360 MsG0880047031.01.T01:CDS
GCTATTAAAGTTATATCAGG+GGG 0.615187 8:-81195207 MsG0880047031.01.T01:CDS
TTGGCAAAATGGATTTGATG+GGG 0.615509 8:+81195975 None:intergenic
AGAGCAAGTTGTTGAGAGAG+CGG 0.616014 8:+81196221 None:intergenic
ATAAGCCGAAATTGTTAGTG+AGG 0.618337 8:+81196149 None:intergenic
CTGGTCAATGGAGAAACCGT+GGG 0.618470 8:+81196042 None:intergenic
GAGGGCCTAACCTTATGCTA+CGG 0.624819 8:-81195484 MsG0880047031.01.T01:CDS
AGGTAGGAAACTGTGAAAGA+TGG 0.624924 8:+81196169 None:intergenic
GGCTATTAAAGTTATATCAG+GGG 0.627367 8:-81195208 MsG0880047031.01.T01:CDS
ACGACTTCGTTTCAATACCC+CGG 0.629824 8:-81196098 MsG0880047031.01.T01:CDS
AGTTGAGAAGAGCTCTGAGA+CGG 0.630444 8:+81196281 None:intergenic
AGGCTTACACGAAGGAAACG+AGG 0.635953 8:+81195887 None:intergenic
TCTGGTCAATGGAGAAACCG+TGG 0.643046 8:+81196041 None:intergenic
GGCTTACACGAAGGAAACGA+GGG 0.649598 8:+81195888 None:intergenic
GATACAATCCATCATTCGCA+GGG 0.650640 8:-81196020 MsG0880047031.01.T01:CDS
AACAGTATCGGGTTTCTCCG+GGG 0.654436 8:+81196081 None:intergenic
GTTGATGCCTTGAAGAACTG+GGG 0.672967 8:-81195542 MsG0880047031.01.T01:CDS
GTTTGTTGAGGCTTACACGA+AGG 0.677380 8:+81195879 None:intergenic
GGGGTTTGAGACGAAAACGA+CGG 0.698254 8:+81195994 None:intergenic
GGTGTGGTTGCAGATGAAGG+AGG 0.735727 8:+81196242 None:intergenic
TTGATCTGAATCTGAAATGG+CGG 0.739869 8:+81196192 None:intergenic
AAGTTGTTGAGAGAGCGGTG+TGG 0.791544 8:+81196226 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTCATCTGTTTTGA+GGG - Chr8:81195810-81195829 MsG0880047031.01.T01:CDS 20.0%
!!! ATTTTAACTGCATTTAAAAG+AGG - Chr8:81195979-81195998 MsG0880047031.01.T01:CDS 20.0%
!!! TAATTTTTTCATCTGTTTTG+AGG - Chr8:81195809-81195828 MsG0880047031.01.T01:CDS 20.0%
!!! TTTTAACTGCATTTAAAAGA+GGG - Chr8:81195980-81195999 MsG0880047031.01.T01:CDS 20.0%
! AACTCATCCTTCAAATAAAA+TGG + Chr8:81196210-81196229 None:intergenic 25.0%
! ACACAAAAATTGTAACTAGA+AGG + Chr8:81195871-81195890 None:intergenic 25.0%
! ACAGATGAAAAAATTACAGA+AGG + Chr8:81195805-81195824 None:intergenic 25.0%
! ATCAAGCAAGAATTTCAAAT+TGG + Chr8:81195737-81195756 None:intergenic 25.0%
! TCAAGCAAGAATTTCAAATT+GGG + Chr8:81195736-81195755 None:intergenic 25.0%
! TGGCTATTAAAGTTATATCA+GGG - Chr8:81196273-81196292 MsG0880047031.01.T01:CDS 25.0%
! TTCTTACCAATTCAAAAGTA+GGG + Chr8:81195636-81195655 None:intergenic 25.0%
! TTGGCTATTAAAGTTATATC+AGG - Chr8:81196272-81196291 MsG0880047031.01.T01:CDS 25.0%
!!! ATCAATAGCTTTTTTATCAG+AGG + Chr8:81195668-81195687 None:intergenic 25.0%
!!! CTTCAATTTTTAGCTTCTAA+AGG - Chr8:81195532-81195551 MsG0880047031.01.T01:CDS 25.0%
!!! TCAATAGCTTTTTTATCAGA+GGG + Chr8:81195667-81195686 None:intergenic 25.0%
CTTCTTACCAATTCAAAAGT+AGG + Chr8:81195637-81195656 None:intergenic 30.0%
GAAGCTAAAAATTGAAGCTT+TGG + Chr8:81195529-81195548 None:intergenic 30.0%
GCTATTAAAGTTATATCAGG+GGG - Chr8:81196275-81196294 MsG0880047031.01.T01:CDS 30.0%
GGCTATTAAAGTTATATCAG+GGG - Chr8:81196274-81196293 MsG0880047031.01.T01:CDS 30.0%
TTGAAATTCTTGCTTGATAC+TGG - Chr8:81195739-81195758 MsG0880047031.01.T01:CDS 30.0%
! AAATTGAAGCTTTGGCAAAA+TGG + Chr8:81195521-81195540 None:intergenic 30.0%
! CAATTTTTGTGTAGCATTGT+TGG - Chr8:81195879-81195898 MsG0880047031.01.T01:CDS 30.0%
! TTTGGCAAAATGGATTTGAT+GGG + Chr8:81195511-81195530 None:intergenic 30.0%
!! AACTGCACCATTTTATTTGA+AGG - Chr8:81196200-81196219 MsG0880047031.01.T01:CDS 30.0%
!! CATTATCCCTACTTTTGAAT+TGG - Chr8:81195627-81195646 MsG0880047031.01.T01:CDS 30.0%
AAAAAGGCGATAACAGTATC+GGG + Chr8:81195415-81195434 None:intergenic 35.0%
ATAAGCCGAAATTGTTAGTG+AGG + Chr8:81195336-81195355 None:intergenic 35.0%
ATCCAGTATCTTCTTTCCAA+AGG - Chr8:81196153-81196172 MsG0880047031.01.T01:CDS 35.0%
ATCCTTCTTCATCAAACCTT+TGG + Chr8:81196172-81196191 None:intergenic 35.0%
ATTAAAGTTATATCAGGGGG+AGG - Chr8:81196278-81196297 MsG0880047031.01.T01:CDS 35.0%
GAAAAAGGCGATAACAGTAT+CGG + Chr8:81195416-81195435 None:intergenic 35.0%
TCCTACCTCACTAACAATTT+CGG - Chr8:81195328-81195347 MsG0880047031.01.T01:CDS 35.0%
TCGGACTTAGTATAGAGAAA+AGG - Chr8:81196109-81196128 MsG0880047031.01.T01:CDS 35.0%
TGGAGGAGATTAAGGAATTA+GGG - Chr8:81195839-81195858 MsG0880047031.01.T01:CDS 35.0%
TGGTTGATCTGAATCTGAAA+TGG + Chr8:81195296-81195315 None:intergenic 35.0%
TTAAAGTTATATCAGGGGGA+GGG - Chr8:81196279-81196298 MsG0880047031.01.T01:CDS 35.0%
TTCCAAAGGTTTGATGAAGA+AGG - Chr8:81196167-81196186 MsG0880047031.01.T01:CDS 35.0%
! AACCTTTGGAAAGAAGATAC+TGG + Chr8:81196158-81196177 None:intergenic 35.0%
! AAGGTATGTGAATCGTTTTG+AGG - Chr8:81196239-81196258 MsG0880047031.01.T01:CDS 35.0%
! CTTTGGCAAAATGGATTTGA+TGG + Chr8:81195512-81195531 None:intergenic 35.0%
! GAAGGAGGTAACTACATTTT+GGG + Chr8:81195228-81195247 None:intergenic 35.0%
! GGATTTAGTGATAGCCTTTT+TGG + Chr8:81195905-81195924 None:intergenic 35.0%
! TAGGGATAATGTGTTTGTTG+AGG + Chr8:81195618-81195637 None:intergenic 35.0%
! TGAAGGAGGTAACTACATTT+TGG + Chr8:81195229-81195248 None:intergenic 35.0%
! TTGATCTGAATCTGAAATGG+CGG + Chr8:81195293-81195312 None:intergenic 35.0%
! TTGGCAAAATGGATTTGATG+GGG + Chr8:81195510-81195529 None:intergenic 35.0%
!!! TTTTTCATCTGTTTTGAGGG+AGG - Chr8:81195813-81195832 MsG0880047031.01.T01:CDS 35.0%
AACGATTCACATACCTTTGC+AGG + Chr8:81196236-81196255 None:intergenic 40.0%
AAGGTCTGCTTGTAAGCAAA+CGG + Chr8:81195786-81195805 None:intergenic 40.0%
ACGGTGATGATTATGTCTTC+TGG + Chr8:81195565-81195584 None:intergenic 40.0%
AGAATAACCCCAGTTCTTCA+AGG + Chr8:81195950-81195969 None:intergenic 40.0%
AGAGAAAAGGCTTAGTCCAA+GGG - Chr8:81196122-81196141 MsG0880047031.01.T01:CDS 40.0%
AGATACAATCCATCATTCGC+AGG - Chr8:81195461-81195480 MsG0880047031.01.T01:CDS 40.0%
AGGCTATCACTAAATCCCAA+TGG - Chr8:81195908-81195927 MsG0880047031.01.T01:CDS 40.0%
AGGTAGGAAACTGTGAAAGA+TGG + Chr8:81195316-81195335 None:intergenic 40.0%
ATACTAAGTCCGAAAAGCTC+TGG + Chr8:81196102-81196121 None:intergenic 40.0%
ATCAACTTTGGCATCCCATT+GGG + Chr8:81195926-81195945 None:intergenic 40.0%
GATACAATCCATCATTCGCA+GGG - Chr8:81195462-81195481 MsG0880047031.01.T01:CDS 40.0%
GGCTATCACTAAATCCCAAT+GGG - Chr8:81195909-81195928 MsG0880047031.01.T01:CDS 40.0%
GTGGAGGAGATTAAGGAATT+AGG - Chr8:81195838-81195857 MsG0880047031.01.T01:CDS 40.0%
TAACCTTATGCTACGGTCTT+CGG - Chr8:81196005-81196024 MsG0880047031.01.T01:CDS 40.0%
TAGAGAAAAGGCTTAGTCCA+AGG - Chr8:81196121-81196140 MsG0880047031.01.T01:CDS 40.0%
TGTAGCATTGTTGGCCAAAA+AGG - Chr8:81195888-81195907 MsG0880047031.01.T01:CDS 40.0%
TTGGATCCAACAACTTGGTT+GGG - Chr8:81196053-81196072 MsG0880047031.01.T01:CDS 40.0%
TTTCATGCGACCATCACTAA+TGG + Chr8:81195713-81195732 None:intergenic 40.0%
TTTCCTGCTACCATTAGTGA+TGG - Chr8:81195700-81195719 MsG0880047031.01.T01:CDS 40.0%
TTTGGATCCAACAACTTGGT+TGG - Chr8:81196052-81196071 MsG0880047031.01.T01:CDS 40.0%
! AGTTGATGCCTTGAAGAACT+GGG - Chr8:81195939-81195958 MsG0880047031.01.T01:CDS 40.0%
! ATAACAGTATCGGGTTTCTC+CGG + Chr8:81195406-81195425 None:intergenic 40.0%
! GTTCTTCAAGGCATCAACTT+TGG + Chr8:81195938-81195957 None:intergenic 40.0%
! TCAATGCAGTGATGCGTTTT+TGG - Chr8:81196034-81196053 MsG0880047031.01.T01:CDS 40.0%
!! AAGTTGATGCCTTGAAGAAC+TGG - Chr8:81195938-81195957 MsG0880047031.01.T01:CDS 40.0%
!! CGTTTTTGGATCCAACAACT+TGG - Chr8:81196048-81196067 MsG0880047031.01.T01:CDS 40.0%
!! GATGGATTGTATCTGGTCAA+TGG + Chr8:81195455-81195474 None:intergenic 40.0%
!! TGCGAATGATGGATTGTATC+TGG + Chr8:81195462-81195481 None:intergenic 40.0%
!!! ATCGCCTTTTTCAAAACCCA+CGG - Chr8:81195424-81195443 MsG0880047031.01.T01:CDS 40.0%
!!! GAAACCGTGGGTTTTGAAAA+AGG + Chr8:81195431-81195450 None:intergenic 40.0%
!!! GTATGTGAATCGTTTTGAGG+AGG - Chr8:81196242-81196261 MsG0880047031.01.T01:CDS 40.0%
AAGGATCCCAACCAAGTTGT+TGG + Chr8:81196062-81196081 None:intergenic 45.0%
ACGACTTCGTTTCAATACCC+CGG - Chr8:81195384-81195403 MsG0880047031.01.T01:CDS 45.0%
AGAGCAAGTTGTTGAGAGAG+CGG + Chr8:81195264-81195283 None:intergenic 45.0%
AGGATGAGTTGTTCCTGCAA+AGG - Chr8:81196220-81196239 MsG0880047031.01.T01:CDS 45.0%
CATCAACTTTGGCATCCCAT+TGG + Chr8:81195927-81195946 None:intergenic 45.0%
GAAGACCGTAGCATAAGGTT+AGG + Chr8:81196006-81196025 None:intergenic 45.0%
GCCGAAATTGTTAGTGAGGT+AGG + Chr8:81195332-81195351 None:intergenic 45.0%
GTTGATGCCTTGAAGAACTG+GGG - Chr8:81195940-81195959 MsG0880047031.01.T01:CDS 45.0%
TACTGGATAACTGAAGCCCT+TGG + Chr8:81196141-81196160 None:intergenic 45.0%
TTGGGATCCTTTATTGCTCC+TGG - Chr8:81196071-81196090 MsG0880047031.01.T01:CDS 45.0%
! GTTTGTTGAGGCTTACACGA+AGG + Chr8:81195606-81195625 None:intergenic 45.0%
! TAACAGTATCGGGTTTCTCC+GGG + Chr8:81195405-81195424 None:intergenic 45.0%
!! AGTTGAGAAGAGCTCTGAGA+CGG + Chr8:81195204-81195223 None:intergenic 45.0%
!! GAAACGAGGGTTTCTGGTTA+CGG + Chr8:81195584-81195603 None:intergenic 45.0%
!!! GTTTTGAGGAGGAAGCATCT+TGG - Chr8:81196253-81196272 MsG0880047031.01.T01:CDS 45.0%
AAGTTGTTGAGAGAGCGGTG+TGG + Chr8:81195259-81195278 None:intergenic 50.0%
ACGAAGGAAACGAGGGTTTC+TGG + Chr8:81195590-81195609 None:intergenic 50.0%
AGGCTTACACGAAGGAAACG+AGG + Chr8:81195598-81195617 None:intergenic 50.0%
CGACCATCACTAATGGTAGC+AGG + Chr8:81195706-81195725 None:intergenic 50.0%
CTGGTCAATGGAGAAACCGT+GGG + Chr8:81195443-81195462 None:intergenic 50.0%
GAGGGCCTAACCTTATGCTA+CGG - Chr8:81195998-81196017 MsG0880047031.01.T01:CDS 50.0%
GGCTTACACGAAGGAAACGA+GGG + Chr8:81195597-81195616 None:intergenic 50.0%
TCTGGTCAATGGAGAAACCG+TGG + Chr8:81195444-81195463 None:intergenic 50.0%
TGTCCGAAGACCGTAGCATA+AGG + Chr8:81196011-81196030 None:intergenic 50.0%
! AACAGTATCGGGTTTCTCCG+GGG + Chr8:81195404-81195423 None:intergenic 50.0%
! GGGGTTTGAGACGAAAACGA+CGG + Chr8:81195491-81195510 None:intergenic 50.0%
! GGGTTTGAGACGAAAACGAC+GGG + Chr8:81195490-81195509 None:intergenic 50.0%
!!! ATCTGTTTTGAGGGAGGCTG+TGG - Chr8:81195819-81195838 MsG0880047031.01.T01:CDS 50.0%
AGCGGTGTGGTTGCAGATGA+AGG + Chr8:81195246-81195265 None:intergenic 55.0%
GGAGGCTGTGGAGGAGATTA+AGG - Chr8:81195831-81195850 MsG0880047031.01.T01:CDS 55.0%
GGTGTGGTTGCAGATGAAGG+AGG + Chr8:81195243-81195262 None:intergenic 55.0%
! CTGGCAGCACCAGAGCTTTT+CGG - Chr8:81196090-81196109 MsG0880047031.01.T01:CDS 55.0%
! GGTGCTGCCAGGAGCAATAA+AGG + Chr8:81196081-81196100 None:intergenic 55.0%
!! TGAGAAGAGCTCTGAGACGG+TGG + Chr8:81195201-81195220 None:intergenic 55.0%
!!! TGTTTTGAGGGAGGCTGTGG+AGG - Chr8:81195822-81195841 MsG0880047031.01.T01:CDS 55.0%
GACGGGATCCCTGCGAATGA+TGG + Chr8:81195473-81195492 None:intergenic 60.0%
!! CGAAAAGCTCTGGTGCTGCC+AGG + Chr8:81196092-81196111 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 81195187 81196317 81195187 ID=MsG0880047031.01;Name=MsG0880047031.01
Chr8 mRNA 81195187 81196317 81195187 ID=MsG0880047031.01.T01;Parent=MsG0880047031.01;Name=MsG0880047031.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|376
Chr8 exon 81195187 81196317 81195187 ID=MsG0880047031.01.T01:exon:10593;Parent=MsG0880047031.01.T01
Chr8 CDS 81195187 81196317 81195187 ID=MsG0880047031.01.T01:cds;Parent=MsG0880047031.01.T01
Gene Sequence

>MsG0880047031.01.T01

ATGATTCACTGCCACCGTCTCAGAGCTCTTCTCAACTTCCCAAAATGTAGTTACCTCCTTCATCTGCAACCACACCGCTCTCTCAACAACTTGCTCTTCTCTACCGCCATTTCAGATTCAGATCAACCATCTTTCACAGTTTCCTACCTCACTAACAATTTCGGCTTATCTTCACAAGATGCTCTCAAAGCGTCTAAACGACTTCGTTTCAATACCCCGGAGAAACCCGATACTGTTATCGCCTTTTTCAAAACCCACGGTTTCTCCATTGACCAGATACAATCCATCATTCGCAGGGATCCCGTCGTTTTCGTCTCAAACCCCATCAAATCCATTTTGCCAAAGCTTCAATTTTTAGCTTCTAAAGGCGTTTCTCCAGAAGACATAATCATCACCGTAACCAGAAACCCTCGTTTCCTTCGTGTAAGCCTCAACAAACACATTATCCCTACTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATAAAAAAGCTATTGATTGTGTAATTGCATTTCCTGCTACCATTAGTGATGGTCGCATGAAACCCAATTTGAAATTCTTGCTTGATACTGGTGTCACTCGTTCAAGTATTTACCGTTTGCTTACAAGCAGACCTTCTGTAATTTTTTCATCTGTTTTGAGGGAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTCATCCTTCTAGTTACAATTTTTGTGTAGCATTGTTGGCCAAAAAGGCTATCACTAAATCCCAATGGGATGCCAAAGTTGATGCCTTGAAGAACTGGGGTTATTCTGAAGATGCAATTTTAACTGCATTTAAAAGAGGGCCTAACCTTATGCTACGGTCTTCGGACAAACTCAATGCAGTGATGCGTTTTTGGATCCAACAACTTGGTTGGGATCCTTTATTGCTCCTGGCAGCACCAGAGCTTTTCGGACTTAGTATAGAGAAAAGGCTTAGTCCAAGGGCTTCAGTTATCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAGGATGCTAGCTTAACTGCACCATTTTATTTGAAGGATGAGTTGTTCCTGCAAAGGTATGTGAATCGTTTTGAGGAGGAAGCATCTTGGCTATTAAAGTTATATCAGGGGGAGGGTGCTCGCATTCGCTGA
Protein sequence

>MsG0880047031.01.T01

MIHCHRLRALLNFPKCSYLLHLQPHRSLNNLLFSTAISDSDQPSFTVSYLTNNFGLSSQDALKASKRLRFNTPEKPDTVIAFFKTHGFSIDQIQSIIRRDPVVFVSNPIKSILPKLQFLASKGVSPEDIIITVTRNPRFLRVSLNKHIIPTFELVRSFCPSDKKAIDCVIAFPATISDGRMKPNLKFLLDTGVTRSSIYRLLTSRPSVIFSSVLREAVEEIKELGFHPSSYNFCVALLAKKAITKSQWDAKVDALKNWGYSEDAILTAFKRGPNLMLRSSDKLNAVMRFWIQQLGWDPLLLLAAPELFGLSIEKRLSPRASVIQYLLSKGLMKKDASLTAPFYLKDELFLQRYVNRFEEEASWLLKLYQGEGARIR*