AlfalfaGEDB | MsG0880047602.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047602.01

KEGG: -
GO: GO:0003677 GO:0046983
PFAM: PF00319

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047602.01.T01	XP_024636808.1	84.694	196	13	1	1	179	1	196	2.11E-112	328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047602.01.T01	O64703	44.767	172	83	5	1	161	1	171	2.62E-40	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047602.01.T01	A0A396IJQ5	84.694	196	13	1	1	179	1	196	1.01e-112	328

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TFs/TRs:

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Gene ID	Type	Classification
MsG0880047602.01.T01	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047602.01.T01	MTR_4g131030	84.043	188	13	1	1	171	1	188	2.90e-110	313
MsG0880047602.01.T01	MTR_1g047550	82.682	179	31	0	1	179	1	179	5.41e-110	311
MsG0880047602.01.T01	MTR_8g079502	85.629	167	24	0	1	167	1	167	4.37e-104	296
MsG0880047602.01.T01	MTR_1g063160	77.654	179	40	0	1	179	1	179	6.60e-100	286
MsG0880047602.01.T01	MTR_1g054265	78.698	169	36	0	1	169	1	169	3.15e-95	273
MsG0880047602.01.T01	MTR_8g051580	60.571	175	69	0	1	175	1	175	4.24e-74	221
MsG0880047602.01.T01	MTR_8g046350	58.333	168	64	2	1	168	1	162	1.13e-63	193
MsG0880047602.01.T01	MTR_4g094632	40.854	164	85	3	1	164	1	152	7.69e-35	120
MsG0880047602.01.T01	MTR_3g080940	40.588	170	82	4	1	157	8	171	2.42e-31	112
MsG0880047602.01.T01	MTR_3g052870	41.304	138	78	2	2	136	9	146	9.94e-30	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047602.01.T01	AT2G34440	44.767	172	83	5	1	161	1	171	2.67e-41	137
MsG0880047602.01.T01	AT3G66656	42.373	177	87	4	1	162	1	177	2.88e-32	114
MsG0880047602.01.T01	AT2G24840	35.329	167	87	3	1	150	62	224	1.35e-29	109
MsG0880047602.01.T01	AT5G60440	39.490	157	76	3	2	154	7	148	1.23e-27	105
MsG0880047602.01.T01	AT1G01530	42.143	140	77	2	1	140	6	141	5.61e-25	97.4
MsG0880047602.01.T01	AT3G57230	40.909	110	64	1	1	110	1	109	2.91e-21	85.1
MsG0880047602.01.T01	AT1G65360	37.168	113	71	0	1	113	6	118	7.38e-21	86.3
MsG0880047602.01.T01	AT1G47760	50.649	77	36	1	1	77	1	75	9.29e-21	84.7
MsG0880047602.01.T01	AT3G57230	40.909	110	64	1	1	110	1	109	1.65e-20	85.5
MsG0880047602.01.T01	AT3G57230	40.909	110	64	1	1	110	1	109	1.65e-20	85.5

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Find 36 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTAAGGTCGATTCCC+AGG	0.524951	8:-88609962	None:intergenic
AATGTGACCTGCCTCGTGTT+GGG	0.485158	8:-88609854	None:intergenic
ACATTCTCAAAACGCCGAAC+AGG	0.455680	8:+88609872	MsG0880047602.01.T01:CDS
AGGCTCTTGTTGGAGATACT+TGG	0.417524	8:-88610014	None:intergenic
ATATAAAGAGCTTCACGATT+TGG	0.333750	8:+88610219	MsG0880047602.01.T01:CDS
ATATTGGGTGTATCAGAGGC+GGG	0.514366	8:-88610061	None:intergenic
ATCAGAGGCGGGGTTCCCTT+GGG	0.467488	8:-88610050	None:intergenic
ATCTCTCAATTCTTTAAGCT+CGG	0.500207	8:-88610194	None:intergenic
ATGAAGTGTTGGCACAAATT+CGG	0.337355	8:+88610107	MsG0880047602.01.T01:CDS
CACTTGGTTCAGGCTCTTGT+TGG	0.351803	8:-88610024	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATAAAGAGCTTCACGATT+TGG	+	Chr8:88610219-88610238	MsG0880047602.01.T01:CDS	30.0%
ATCTCTCAATTCTTTAAGCT+CGG	-	Chr8:88610197-88610216	None:intergenic	30.0%
CTTTCTTGAATAAACCTGTT+CGG	-	Chr8:88609889-88609908	None:intergenic	30.0%
GAAATTACGTCTTAGTGATA+TGG	+	Chr8:88610243-88610262	MsG0880047602.01.T01:CDS	30.0%
TTCTATATTGGGTGTATCAG+AGG	-	Chr8:88610068-88610087	None:intergenic	35.0%
TTGCTTCAGAATCTCATCAT+GGG	-	Chr8:88610155-88610174	None:intergenic	35.0%
CAGCAACAACATCAATTCCT+GGG	-	Chr8:88609994-88610013	None:intergenic	40.0%
CTTGCTTCAGAATCTCATCA+TGG	-	Chr8:88610156-88610175	None:intergenic	40.0%
TATATTGGGTGTATCAGAGG+CGG	-	Chr8:88610065-88610084	None:intergenic	40.0%
ACATTCTCAAAACGCCGAAC+AGG	+	Chr8:88609872-88609891	MsG0880047602.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	88609815	88610354	88609815	ID=MsG0880047602.01;Name=MsG0880047602.01
Chr8	mRNA	88609815	88610354	88609815	ID=MsG0880047602.01.T01;Parent=MsG0880047602.01;Name=MsG0880047602.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|179
Chr8	exon	88609815	88610354	88609815	ID=MsG0880047602.01.T01:exon:16038;Parent=MsG0880047602.01.T01
Chr8	CDS	88609815	88610354	88609815	ID=MsG0880047602.01.T01:cds;Parent=MsG0880047602.01.T01

Gene Sequence

>MsG0880047602.01.T01

ATGGGTCGTCGCAAAATTGAGATTGAGATCGTGAAAGATCCCAACACGAGGCAGGTCACATTCTCAAAACGCCGAACAGGTTTATTCAAGAAAGCAAATGAGTTGTCCATTTTGTGCGGAGCAGAGATCGCTATTGTTGTGTTTTCTCCTGGGAATCGACCTTACTCTTTTGGTCACCCAGGAATTGATGTTGTTGCTGCCAAGTATCTCCAACAAGAGCCTGAACCAAGTGATTCCCAAGGGAACCCCGCCTCTGATACACCCAATATAGAAAAATTGAATCTAGAACTTGATGAAGTGTTGGCACAAATTCGGGAAGGTGAAAAGCAGACCGAGACCCATGATGAGATTCTGAAGCAAGACAATGTGATGAAACTCTCCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCACGATTTGGTGAAATTACGTCTTAGTGATATGGAGATATCAGAATGCATGATGCTTTTAGCTCAGGATCCAGTGGTGGGAATAAAAGAAAAATCTGCAAGAAAGAAAAGAAGAAAAAATTAA

Protein sequence

>MsG0880047602.01.T01

MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSPGNRPYSFGHPGIDVVAAKYLQQEPEPSDSQGNPASDTPNIEKLNLELDEVLAQIREGEKQTETHDEILKQDNVMKLSELKELRDSYKELHDLVKLRLSDMEISECMMLLAQDPVVGIKEKSARKKRRKN*