Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000111 | XP_003589387.1 | 98.529 | 340 | 4 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000111 | sp|Q8L999|BPC6_ARATH | 65.084 | 358 | 90 | 15 | 1 | 339 | 1 | 342 | 1.15e-148 | 425 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000111 | G7I6G1 | 98.529 | 340 | 4 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
Gene ID | Type | Classification |
---|---|---|
MsaG000111 | TF | BBR-BPC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000111 | MsaG000115 | 0.820649 | 1.076209e-52 | 2.407886e-50 |
MsaG000111 | MsaG000242 | 0.820796 | 9.960753e-53 | 2.237274e-50 |
MsaG000111 | MsaG000250 | 0.835180 | 3.553079e-56 | 1.196540e-53 |
MsaG000111 | MsaG001467 | 0.828010 | 2.038366e-54 | 5.575720e-52 |
MsaG000111 | MsaG001660 | 0.814260 | 2.911971e-51 | 5.525289e-49 |
MsaG000111 | MsaG001952 | 0.819607 | 1.859781e-52 | 4.047721e-50 |
MsaG000111 | MsaG002536 | 0.804501 | 3.537788e-49 | 5.301684e-47 |
MsaG000111 | MsaG003289 | 0.807205 | 9.617732e-50 | 1.535601e-47 |
MsaG000111 | MsaG003557 | 0.802232 | 1.038566e-48 | 1.477002e-46 |
MsaG000111 | MsaG004387 | 0.804472 | 3.585614e-49 | 5.369813e-47 |
MsaG000111 | MsaG004711 | 0.828277 | 1.759019e-54 | 4.847662e-52 |
MsaG000111 | MsaG005354 | 0.826000 | 6.131700e-54 | 1.585747e-51 |
MsaG000111 | MsaG005512 | 0.804278 | 3.933964e-49 | 5.865265e-47 |
MsaG000111 | MsaG005573 | 0.811617 | 1.098180e-50 | 1.950976e-48 |
MsaG000111 | MsaG005719 | 0.826123 | 5.735444e-54 | 1.488314e-51 |
MsaG000111 | MsaG005770 | 0.837531 | 9.028245e-57 | 3.263940e-54 |
MsaG000111 | MsaG006339 | 0.845395 | 7.829539e-59 | 3.634721e-56 |
MsaG000111 | MsaG006430 | 0.854184 | 2.810185e-61 | 1.763418e-58 |
MsaG000111 | MsaG006715 | 0.815581 | 1.488061e-51 | 2.919163e-49 |
MsaG000111 | MsaG006741 | 0.806092 | 1.647712e-49 | 2.562631e-47 |
MsaG000111 | MsaG006800 | 0.861427 | 2.040617e-63 | 1.675103e-60 |
MsaG000111 | MsaG007240 | 0.846076 | 5.126482e-59 | 2.434067e-56 |
MsaG000111 | MsaG008088 | 0.822658 | 3.711598e-53 | 8.761129e-51 |
MsaG000111 | MsaG009261 | 0.840505 | 1.545419e-57 | 6.129208e-55 |
MsaG000111 | MsaG009370 | 0.804446 | 3.631826e-49 | 5.435660e-47 |
MsaG000111 | MsaG009850 | 0.806106 | 1.636583e-49 | 2.546161e-47 |
MsaG000111 | MsaG010328 | 0.843160 | 3.097859e-58 | 1.337022e-55 |
MsaG000111 | MsaG010694 | 0.815829 | 1.311160e-51 | 2.588353e-49 |
MsaG000111 | MsaG011592 | 0.839783 | 2.379722e-57 | 9.226669e-55 |
MsaG000111 | MsaG011605 | 0.865846 | 8.798766e-65 | 8.598298e-62 |
MsaG000111 | MsaG012633 | 0.817560 | 5.387969e-52 | 1.111916e-49 |
MsaG000111 | MsaG012671 | 0.849605 | 5.519659e-60 | 2.951923e-57 |
MsaG000111 | MsaG013230 | 0.851506 | 1.622937e-60 | 9.265256e-58 |
MsaG000111 | MsaG013266 | 0.861194 | 2.400434e-63 | 1.953163e-60 |
MsaG000111 | MsaG017083 | 0.828604 | 1.467936e-54 | 4.082910e-52 |
MsaG000111 | MsaG017376 | 0.816753 | 8.167321e-52 | 1.650825e-49 |
MsaG000111 | MsaG017378 | 0.830629 | 4.748485e-55 | 1.399083e-52 |
MsaG000111 | MsaG018045 | 0.819098 | 2.425365e-52 | 5.209112e-50 |
MsaG000111 | MsaG018259 | 0.843710 | 2.213483e-58 | 9.723642e-56 |
MsaG000111 | MsaG018404 | 0.844764 | 1.157189e-58 | 5.261613e-56 |
MsaG000111 | MsaG018484 | 0.809774 | 2.737660e-50 | 4.649696e-48 |
MsaG000111 | MsaG018752 | 0.834995 | 3.954528e-56 | 1.324440e-53 |
MsaG000111 | MsaG019287 | 0.823664 | 2.167942e-53 | 5.258778e-51 |
MsaG000111 | MsaG020022 | 0.804723 | 3.181074e-49 | 4.791711e-47 |
MsaG000111 | MsaG020023 | 0.811178 | 1.366598e-50 | 2.401823e-48 |
MsaG000111 | MsaG020361 | 0.818609 | 3.128992e-52 | 6.634711e-50 |
MsaG000111 | MsaG022679 | 0.848848 | 8.948022e-60 | 4.662717e-57 |
MsaG000111 | MsaG022996 | 0.874958 | 9.305597e-68 | 1.335837e-64 |
MsaG000111 | MsaG023194 | 0.801175 | 1.707009e-48 | 2.370003e-46 |
MsaG000111 | MsaG023475 | 0.826552 | 4.537734e-54 | 1.191615e-51 |
MsaG000111 | MsaG023643 | 0.828513 | 1.543522e-54 | 4.282316e-52 |
MsaG000111 | MsaG027863 | 0.819073 | 2.457889e-52 | 5.275356e-50 |
MsaG000111 | MsaG028688 | 0.803083 | 6.946997e-49 | 1.007453e-46 |
MsaG000111 | MsaG028871 | 0.802400 | 9.592578e-49 | 1.369533e-46 |
MsaG000111 | MsaG028883 | 0.801386 | 1.546305e-48 | 2.157165e-46 |
MsaG000111 | MsaG029178 | 0.806608 | 1.284168e-49 | 2.021818e-47 |
MsaG000111 | MsaG029694 | 0.833574 | 8.947823e-56 | 2.872735e-53 |
MsaG000111 | MsaG029989 | 0.803080 | 6.955415e-49 | 1.008613e-46 |
MsaG000111 | MsaG030115 | 0.803685 | 5.217605e-49 | 7.672736e-47 |
MsaG000111 | MsaG030276 | 0.814995 | 2.006029e-51 | 3.877400e-49 |
MsaG000111 | MsaG030392 | 0.821983 | 5.317336e-53 | 1.232572e-50 |
MsaG000111 | MsaG030411 | 0.812213 | 8.158600e-51 | 1.470776e-48 |
MsaG000111 | MsaG032260 | 0.825429 | 8.363300e-54 | 2.128729e-51 |
MsaG000111 | MsaG032716 | 0.800263 | 2.614915e-48 | 3.556503e-46 |
MsaG000111 | MsaG038011 | 0.817793 | 4.777878e-52 | 9.919256e-50 |
MsaG000111 | MsaG042071 | 0.812537 | 6.935800e-51 | 1.260508e-48 |
MsaG000111 | MsaG043571 | 0.839028 | 3.729416e-57 | 1.412293e-54 |
MsaG000111 | MsaG045062 | 0.803729 | 5.110917e-49 | 7.523544e-47 |
MsaG000111 | MsaG045107 | 0.811256 | 1.314676e-50 | 2.314988e-48 |
MsaG000111 | MsaG045130 | 0.803053 | 7.044406e-49 | 1.020882e-46 |
MsaG000111 | MsaG045788 | 0.814479 | 2.606930e-51 | 4.973630e-49 |
MsaG000111 | MsaG045925 | 0.810597 | 1.823349e-50 | 3.159350e-48 |
MsaG000111 | MsaG046701 | 0.819034 | 2.507484e-52 | 5.376415e-50 |
MsaG000111 | MsaG003278 | 0.801315 | 1.599097e-48 | 2.227199e-46 |
MsaG000111 | MsaG009209 | 0.803422 | 5.912691e-49 | 8.641965e-47 |
MsaG000111 | MsaG006858 | 0.871050 | 1.873188e-66 | 2.269417e-63 |
MsaG000111 | MsaG012735 | 0.838014 | 6.795059e-57 | 2.493136e-54 |
MsaG000111 | MsaG028977 | 0.802229 | 1.039956e-48 | 1.478885e-46 |
MsaG000111 | MsaG029395 | 0.810221 | 2.195620e-50 | 3.769660e-48 |
MsaG000111 | MsaG032757 | 0.803070 | 6.987707e-49 | 1.013073e-46 |
MsaG000111 | MsaG032074 | 0.843571 | 2.410655e-58 | 1.054237e-55 |
MsaG000111 | MsaG034989 | 0.823987 | 1.822484e-53 | 4.459526e-51 |
MsaG000111 | MsaG037381 | 0.800226 | 2.660482e-48 | 3.615455e-46 |
MsaG000111 | MsaG045038 | 0.835913 | 2.322742e-56 | 7.996017e-54 |
MsaG000111 | MsaG040992 | 0.812068 | 8.769254e-51 | 1.575210e-48 |
MsaG000111 | MsaG041446 | 0.842591 | 4.384164e-58 | 1.858047e-55 |
MsaG000111 | MsaG041443 | 0.812466 | 7.188837e-51 | 1.304173e-48 |
MsaG000111 | MsaG041359 | 0.812280 | 7.887192e-51 | 1.424233e-48 |
MsaG000111 | MsaG042303 | 0.848118 | 1.421260e-59 | 7.225961e-57 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000111 | MtrunA17_Chr1g0156031 | 98.529 | 340 | 4 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
MsaG000111 | MtrunA17_Chr8g0385961 | 49.713 | 348 | 127 | 10 | 2 | 339 | 3 | 312 | 6.53e-104 | 307 |
MsaG000111 | MtrunA17_Chr6g0479911 | 41.040 | 173 | 102 | 0 | 167 | 339 | 117 | 289 | 1.27e-45 | 157 |
MsaG000111 | MtrunA17_Chr8g0375531 | 51.613 | 124 | 60 | 0 | 216 | 339 | 157 | 280 | 2.37e-42 | 148 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000111 | AT5G42520.1 | 65.084 | 358 | 90 | 15 | 1 | 339 | 1 | 342 | 1.17e-149 | 425 |
MsaG000111 | AT5G42520.2 | 63.966 | 358 | 90 | 15 | 1 | 339 | 1 | 338 | 1.96e-145 | 414 |
MsaG000111 | AT5G42520.3 | 62.543 | 291 | 84 | 11 | 65 | 339 | 1 | 282 | 2.21e-116 | 338 |
MsaG000111 | AT2G21240.1 | 48.830 | 342 | 115 | 7 | 5 | 339 | 8 | 296 | 6.54e-100 | 297 |
MsaG000111 | AT2G21240.2 | 48.830 | 342 | 115 | 7 | 5 | 339 | 8 | 296 | 6.54e-100 | 297 |
MsaG000111 | AT4G38910.2 | 45.266 | 338 | 120 | 7 | 5 | 339 | 8 | 283 | 8.46e-93 | 278 |
MsaG000111 | AT4G38910.1 | 45.253 | 316 | 111 | 6 | 24 | 339 | 5 | 258 | 1.35e-86 | 261 |
MsaG000111 | AT2G35550.2 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.46e-45 | 155 |
MsaG000111 | AT2G35550.4 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.46e-45 | 155 |
MsaG000111 | AT2G35550.3 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.46e-45 | 155 |
MsaG000111 | AT2G35550.1 | 55.932 | 118 | 52 | 0 | 222 | 339 | 154 | 271 | 1.91e-45 | 156 |
MsaG000111 | AT1G68120.1 | 56.075 | 107 | 47 | 0 | 233 | 339 | 163 | 269 | 1.36e-43 | 151 |
MsaG000111 | AT2G01930.2 | 55.455 | 110 | 49 | 0 | 230 | 339 | 174 | 283 | 2.13e-43 | 151 |
MsaG000111 | AT2G01930.1 | 55.455 | 110 | 49 | 0 | 230 | 339 | 174 | 283 | 2.13e-43 | 151 |
MsaG000111 | AT1G14685.1 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
MsaG000111 | AT1G14685.4 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
MsaG000111 | AT1G14685.3 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
MsaG000111 | AT1G14685.2 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
Find 89 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGGCCCAATGGTCTTTA+AGG | 0.149233 | 1:+1501697 | None:intergenic |
GGTAAACCATTTGCCTAATA+TGG | 0.151975 | 1:-1502288 | MsaT000111.1:CDS |
CCATTCAAGCTCTTTGTTGT+TGG | 0.281988 | 1:+1502070 | None:intergenic |
TTGCTGTACAACCACTTTAT+CGG | 0.289810 | 1:-1501850 | MsaT000111.1:CDS |
TCTGGCCCTCTCTGAGAAAA+AGG | 0.293315 | 1:-1502513 | MsaT000111.1:CDS |
AGTAGTGAGGAAATGATAAA+TGG | 0.302982 | 1:-1502044 | MsaT000111.1:CDS |
GATTGACATAATTTGCTTCA+TGG | 0.306231 | 1:+1502571 | None:intergenic |
CTGATGGACGATCGTGAAAA+TGG | 0.307285 | 1:-1502793 | MsaT000111.1:CDS |
TAAGAAGAATCACCCATATT+AGG | 0.336214 | 1:+1502275 | None:intergenic |
CTTACTTTCCTTTGGCCGTT+TGG | 0.363106 | 1:+1502172 | None:intergenic |
CAATGGTCTTTAAGGTCAAC+CGG | 0.380775 | 1:+1501705 | None:intergenic |
TTTCCCAACCTCTGAAGAAA+TGG | 0.384675 | 1:+1502208 | None:intergenic |
GAATCAGACTTACTTTCCTT+TGG | 0.396516 | 1:+1502164 | None:intergenic |
CCAACAACAAAGAGCTTGAA+TGG | 0.401945 | 1:-1502070 | MsaT000111.1:CDS |
GGCCAGATTTCTTTCTTGAA+TGG | 0.411936 | 1:+1502529 | None:intergenic |
GGAACGGAATAATGCACTTA+TGG | 0.418242 | 1:-1502438 | MsaT000111.1:CDS |
CGAGAAAATGCTTTGGCCAA+TGG | 0.428561 | 1:-1502383 | MsaT000111.1:CDS |
GTATCGATTTGTACCATGTT+TGG | 0.434696 | 1:+1501680 | None:intergenic |
TTCCCAACCTCTGAAGAAAT+GGG | 0.437141 | 1:+1502209 | None:intergenic |
AGGTTTCCAATCAGCCTTTG+AGG | 0.441798 | 1:+1501992 | None:intergenic |
TATACATCACCTTCCGCAAC+AGG | 0.447735 | 1:-1502309 | MsaT000111.1:CDS |
AATCACCCATATTAGGCAAA+TGG | 0.448313 | 1:+1502282 | None:intergenic |
TTGTACCATGTTTGGCCCAA+TGG | 0.454297 | 1:+1501688 | None:intergenic |
TAGCAGCCTCAAAGGCTGAT+TGG | 0.454649 | 1:-1501998 | MsaT000111.1:CDS |
AATATGGGTGATTCTTCTTA+CGG | 0.455899 | 1:-1502272 | MsaT000111.1:CDS |
AGATCAATATAAATCTGCTC+AGG | 0.457509 | 1:-1502758 | MsaT000111.1:CDS |
TTCTGAGACAGTGCTACAAA+TGG | 0.466001 | 1:-1501896 | MsaT000111.1:CDS |
GTACAAGAGCATGCTGGTGC+TGG | 0.473862 | 1:+1501924 | None:intergenic |
GCACCAGCATGCTCTTGTAC+TGG | 0.474798 | 1:-1501921 | MsaT000111.1:CDS |
CGGTTGACCTTAAAGACCAT+TGG | 0.478594 | 1:-1501704 | MsaT000111.1:CDS |
TCTGAGACAGTGCTACAAAT+GGG | 0.478630 | 1:-1501895 | MsaT000111.1:CDS |
GTAAACCATTTGCCTAATAT+GGG | 0.479892 | 1:-1502287 | MsaT000111.1:CDS |
CAGTGCTACAAATGGGGTAA+TGG | 0.484703 | 1:-1501888 | MsaT000111.1:CDS |
TCAGTTTCGAGAAAATGCTT+TGG | 0.485734 | 1:-1502390 | MsaT000111.1:CDS |
AGCCATTCAAGAAAGAAATC+TGG | 0.489436 | 1:-1502531 | MsaT000111.1:CDS |
CCCCGTGAGATTTGACATCC+TGG | 0.492305 | 1:+1502341 | None:intergenic |
TGATTGGAAACCTCAGGACT+TGG | 0.494236 | 1:-1501982 | MsaT000111.1:CDS |
GGCAAATGGTTTACCTGTTG+CGG | 0.495581 | 1:+1502296 | None:intergenic |
TTCCAGCTGTGCCCAACAAA+AGG | 0.495805 | 1:-1501818 | MsaT000111.1:CDS |
GAAGCAAATTATGTCAATCA+TGG | 0.497300 | 1:-1502567 | MsaT000111.1:CDS |
CTTAGCCGGCTTGCAGCTGA+AGG | 0.500276 | 1:-1501744 | MsaT000111.1:CDS |
TTGAATCATCGTATGCAACT+TGG | 0.503216 | 1:+1501952 | None:intergenic |
GACATAATTTGCTTCATGGA+AGG | 0.504898 | 1:+1502575 | None:intergenic |
ATATAAATCTGCTCAGGGAC+AGG | 0.509112 | 1:-1502752 | MsaT000111.1:intron |
CTTTCAATAAACTACTTAGC+CGG | 0.514461 | 1:-1501758 | MsaT000111.1:CDS |
TTTGGCCGTTTGGCACGCCT+AGG | 0.515774 | 1:+1502182 | None:intergenic |
TTGTTGGGCACAGCTGGAAG+TGG | 0.517836 | 1:+1501822 | None:intergenic |
GGTATGTCATCATGCCCTCC+AGG | 0.518820 | 1:-1502359 | MsaT000111.1:CDS |
GGTTGACCTTAAAGACCATT+GGG | 0.521688 | 1:-1501703 | MsaT000111.1:CDS |
CAAGCAGTTAGCAGCCTCAA+AGG | 0.533010 | 1:-1502006 | MsaT000111.1:CDS |
AAAGGCTGATTGGAAACCTC+AGG | 0.538629 | 1:-1501988 | MsaT000111.1:CDS |
AACCACCTAGGCGTGCCAAA+CGG | 0.540428 | 1:-1502187 | MsaT000111.1:CDS |
CAATTGCAGTATCTCGCTGC+AGG | 0.542654 | 1:+1502462 | None:intergenic |
ACAAATGGGGTAATGGAGGT+TGG | 0.545815 | 1:-1501881 | MsaT000111.1:CDS |
ATCTAGAAAAGTCAAGAAAG+AGG | 0.546447 | 1:-1502120 | MsaT000111.1:CDS |
GGCCGTTTGGCACGCCTAGG+TGG | 0.547084 | 1:+1502185 | None:intergenic |
TCCAGGATGTCAAATCTCAC+GGG | 0.552910 | 1:-1502342 | MsaT000111.1:CDS |
CTCCAGGATGTCAAATCTCA+CGG | 0.563255 | 1:-1502343 | MsaT000111.1:CDS |
GCATGATGACATACCACCAT+TGG | 0.567052 | 1:+1502367 | None:intergenic |
TTTGCTTCATGGAAGGATGC+TGG | 0.583298 | 1:+1502582 | None:intergenic |
TGGTTCAATGCCAAGTCCTG+AGG | 0.592965 | 1:+1501972 | None:intergenic |
AGAGCATGCTGGTGCTGGCA+TGG | 0.596415 | 1:+1501929 | None:intergenic |
CCCAACCTCTGAAGAAATGG+GGG | 0.597363 | 1:+1502211 | None:intergenic |
GCTTGAATGGAAGAGTAGTG+AGG | 0.599481 | 1:-1502057 | MsaT000111.1:CDS |
AAAAGGCATGCTCGAGTAGG+TGG | 0.599819 | 1:-1501801 | MsaT000111.1:CDS |
TAGGCGTGCCAAACGGCCAA+AGG | 0.600212 | 1:-1502180 | MsaT000111.1:CDS |
CATGCCCTTCAGCTGCAAGC+CGG | 0.601437 | 1:+1501739 | None:intergenic |
AAAGACCATTGGGCCAAACA+TGG | 0.604624 | 1:-1501693 | MsaT000111.1:CDS |
AAGTGGATATACCGATAAAG+TGG | 0.604637 | 1:+1501839 | None:intergenic |
TCTAGAAAAGTCAAGAAAGA+GGG | 0.605111 | 1:-1502119 | MsaT000111.1:CDS |
AATGGTTTACCTGTTGCGGA+AGG | 0.606017 | 1:+1502300 | None:intergenic |
GAGATACTGCAATTGCGGAA+CGG | 0.606489 | 1:-1502454 | MsaT000111.1:CDS |
TGCTACAAATGGGGTAATGG+AGG | 0.606890 | 1:-1501885 | MsaT000111.1:CDS |
TCCCAACCTCTGAAGAAATG+GGG | 0.610433 | 1:+1502210 | None:intergenic |
GATCAATATAAATCTGCTCA+GGG | 0.611740 | 1:-1502757 | MsaT000111.1:CDS |
GCAGCGAGATACTGCAATTG+CGG | 0.613903 | 1:-1502459 | MsaT000111.1:CDS |
GAAAATGCTTTGGCCAATGG+TGG | 0.615877 | 1:-1502380 | MsaT000111.1:CDS |
CAGAGGTTGGGAAACCACCT+AGG | 0.616912 | 1:-1502199 | MsaT000111.1:CDS |
AGCACTTGCAGAACGTGACA+TGG | 0.620297 | 1:-1502489 | MsaT000111.1:CDS |
TGGACGATCGTGAAAATGGA+AGG | 0.626784 | 1:-1502789 | MsaT000111.1:CDS |
TTAGCCGGCTTGCAGCTGAA+GGG | 0.630246 | 1:-1501743 | MsaT000111.1:CDS |
CTGAGACAGTGCTACAAATG+GGG | 0.642920 | 1:-1501894 | MsaT000111.1:CDS |
AGGGCATGATCTCTCACACC+CGG | 0.643910 | 1:-1501724 | MsaT000111.1:CDS |
ACACCAGTACAAGAGCATGC+TGG | 0.644328 | 1:+1501918 | None:intergenic |
GTGAGATTTGACATCCTGGA+GGG | 0.655568 | 1:+1502345 | None:intergenic |
AACAAAAGGCATGCTCGAGT+AGG | 0.658830 | 1:-1501804 | MsaT000111.1:CDS |
CCAGGATGTCAAATCTCACG+GGG | 0.670697 | 1:-1502341 | MsaT000111.1:CDS |
AATGGTCTTTAAGGTCAACC+GGG | 0.672212 | 1:+1501706 | None:intergenic |
CGTGAGATTTGACATCCTGG+AGG | 0.739694 | 1:+1502344 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 1501665 | 1502812 | 1501665 | ID=MsaG000111 |
Chr1 | mRNA | 1501665 | 1502812 | 1501665 | ID=MsaT000111.1;Parent=MsaG000111 |
Chr1 | exon | 1501665 | 1502624 | 1501665 | ID=MsaT000111.1.exon2;Parent=MsaT000111.1 |
Chr1 | CDS | 1501665 | 1502624 | 1501665 | ID=cds.MsaT000111.1;Parent=MsaT000111.1 |
Chr1 | exon | 1502753 | 1502812 | 1502753 | ID=MsaT000111.1.exon1;Parent=MsaT000111.1 |
Chr1 | CDS | 1502753 | 1502812 | 1502753 | ID=cds.MsaT000111.1;Parent=MsaT000111.1 |
Gene Sequence |
Protein sequence |