AlfalfaGEDB | MsaG000171

M. sativa ssp. caerulea / MsaG000171

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00646.36

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000171	XP_013466123.1	87.915	422	9	2	1	380	1	422	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000171	sp\|Q6Z2G9\|TLP5_ORYSJ	58.005	431	127	8	1	380	1	428	1.10e-160	460

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000171	A0A072VEB5	87.915	422	9	2	1	380	1	422	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000171	TF	TUB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000171	MtrunA17_Chr1g0155301	87.915	422	9	2	1	380	1	422	0.0	754
MsaG000171	MtrunA17_Chr5g0404321	59.242	422	124	7	1	380	1	416	1.21e-171	485
MsaG000171	MtrunA17_Chr8g0373001	58.432	421	125	7	1	380	1	412	7.36e-164	465
MsaG000171	MtrunA17_Chr1g0156151	85.652	230	21	2	1	227	1	221	1.24e-133	381
MsaG000171	MtrunA17_Chr1g0201891	48.081	443	155	9	1	380	1	431	1.83e-133	388
MsaG000171	MtrunA17_Chr2g0278511	48.966	435	159	8	1	380	1	427	8.86e-133	387
MsaG000171	MtrunA17_Chr2g0286441	54.848	361	123	5	57	380	36	393	5.33e-130	378
MsaG000171	MtrunA17_Chr1g0196071	48.622	399	163	7	20	380	8	402	1.07e-120	355
MsaG000171	MtrunA17_Chr2g0315641	47.592	353	134	5	58	380	40	371	1.61e-107	320
MsaG000171	MtrunA17_Chr8g0373361	43.990	416	169	10	1	373	11	405	9.76e-103	309

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000171	AT1G47270.3	60.313	383	116	5	28	380	12	388	3.45e-157	447
MsaG000171	AT1G47270.1	58.272	405	127	6	6	380	21	413	3.65e-157	448
MsaG000171	AT1G47270.2	58.168	404	127	6	7	380	21	412	4.49e-157	448
MsaG000171	AT2G18280.2	54.015	411	140	8	1	380	1	393	9.52e-144	414
MsaG000171	AT2G18280.1	54.015	411	140	8	1	380	1	393	9.52e-144	414
MsaG000171	AT2G47900.2	48.077	416	170	6	1	380	1	406	1.28e-130	380
MsaG000171	AT2G47900.1	48.077	416	170	6	1	380	1	406	1.28e-130	380
MsaG000171	AT2G47900.3	47.962	417	170	7	1	380	1	407	7.29e-129	376
MsaG000171	AT1G25280.1	47.661	449	162	9	1	380	1	445	1.38e-127	374
MsaG000171	AT1G76900.2	45.690	464	159	8	1	380	1	455	5.38e-124	365

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Find 78 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCAGAAGTTGTTGAATT+TGG	0.203153	1:+2249606	MsaT000171.1:CDS
AAGGAGATGAAAGAGGGAAT+TGG	0.461217	1:+2248185	MsaT000171.1:CDS
AAGGCTTGAAAAGCAGAGAG+AGG	0.664732	1:-2249873	None:intergenic
ACCAAGATATAAACTATATG+TGG	0.517704	1:-2248696	None:intergenic
ACCAAGTTCACGATCTTAGA+TGG	0.416091	1:+2249316	MsaT000171.1:CDS
ACCATCATCAGAGAGTCAAT+GGG	0.583262	1:+2248313	MsaT000171.1:CDS
ACCATCTAAGATCGTGAACT+TGG	0.451643	1:-2249317	None:intergenic
ACTAAGCTTATGCATAGACA+TGG	0.614879	1:+2248233	MsaT000171.1:CDS
ACTATTAGACATAATTCAAA+GGG	0.516941	1:+2248355	MsaT000171.1:CDS
AGACACTTGAACAGTGTGGC+TGG	0.511733	1:+2248474	MsaT000171.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	2248155	2249941	2248155	ID=MsaG000171
Chr1	mRNA	2248155	2249941	2248155	ID=MsaT000171.1;Parent=MsaG000171
Chr1	exon	2248155	2248523	2248155	ID=MsaT000171.1.exon1;Parent=MsaT000171.1
Chr1	CDS	2248155	2248523	2248155	ID=cds.MsaT000171.1;Parent=MsaT000171.1
Chr1	exon	2248641	2248728	2248641	ID=MsaT000171.1.exon2;Parent=MsaT000171.1
Chr1	CDS	2248641	2248728	2248641	ID=cds.MsaT000171.1;Parent=MsaT000171.1
Chr1	exon	2249083	2249215	2249083	ID=MsaT000171.1.exon3;Parent=MsaT000171.1
Chr1	CDS	2249083	2249215	2249083	ID=cds.MsaT000171.1;Parent=MsaT000171.1
Chr1	exon	2249300	2249389	2249300	ID=MsaT000171.1.exon4;Parent=MsaT000171.1
Chr1	CDS	2249300	2249389	2249300	ID=cds.MsaT000171.1;Parent=MsaT000171.1
Chr1	exon	2249479	2249941	2249479	ID=MsaT000171.1.exon5;Parent=MsaT000171.1
Chr1	CDS	2249479	2249941	2249479	ID=cds.MsaT000171.1;Parent=MsaT000171.1

Gene Sequence

>MsaT000171.1

ATGCCTTTCAAGAGTATTGTGAGAGAGATGAAGGAGATGAAAGAGGGAATTGGCAACATGTATAGAAGAGGTGTAGAAACTAAGCTTATGCATAGACATGGAAAATCTCACATAGCACCAGAATGTTCCTCACCAATATCACTATCAGCACCAACAACACCATCATCAGAGAGTCAATGGGCTAATTTACCTCCTGAGTTACTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCACTTGGCCATCTCGCCGAGCACTTGTAGCTTGTGCCTCAGTTTGTAGATTATGGAGAGACATAACAAAGGGTGTTGTTAAGACACTTGAACAGTGTGGCTGGATCACTTTCCCTATATCACTGAAGCAGCCTGCTCCAAGAGACAATCCAATTCAGTGTTTTATTAAGAGAGAAAGGGCTACTTCCACATATAGTTTATATCTTGGTCTAAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTCTCTTGGCAGCAAAGAAGATTAGAAGAGCAACATGCACAGAATTTTTAATATCATTGGTTTCTGATGATTTCTCTAGAGCTAACAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGCACCAAGTTCACGATCTTAGATGGTCATCCTCCACATGTTTCTTCGCTTCCATCAAGTTGCAAGTTGCAGCAAAGAGGTCCAAGGCGAATGCGGAGTACAATGCACTTAATCCCCATATCTTCAGTCCAAGAAGGAGGAACTGCTCCTACTCCTATGGAATTTACCAATTGCCACAATGAGCATGAATCTGCAAAAGAAAAGAAGCCAGAAGTTGTTGAATTTGGCTCAACTTGCACTGATTTTGCAAGAGAGCCTCTGATTTTGAAAAACAAAGCACCAAGATGGCATGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGGGTTACAGTGGCTTCGGTGAAGAATTTTCAGCTTGTAGCAGTTGCAGAACCTAGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTTATACTACAATTTGGAAAAATCGGGAAGGACATATTCACCATGGATTATCGATATCCTCTCTCTGCTTTTCAAGCCTTTGCAATCTGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA

Protein sequence

>MsaT000171.1

MPFKSIVREMKEMKEGIGNMYRRGVETKLMHRHGKSHIAPECSSPISLSAPTTPSSESQWANLPPELLLDIIQRVEASETTWPSRRALVACASVCRLWRDITKGVVKTLEQCGWITFPISLKQPAPRDNPIQCFIKRERATSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSDDFSRANNTYIGKLRSNFLGTKFTILDGHPPHVSSLPSSCKLQQRGPRRMRSTMHLIPISSVQEGGTAPTPMEFTNCHNEHESAKEKKPEVVEFGSTCTDFAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAVAEPSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*