AlfalfaGEDB | MsaG000181

M. sativa ssp. caerulea / MsaG000181

KEGG: -
GO: GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000181	XP_013466107.1	100.000	93	0	0	1	93	1	93	1.48e-62	194

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000181	sp\|F4JVB8\|RADL1_ARATH	58.621	87	36	0	7	93	14	100	5.99e-35	117

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000181	A0A072VEW4	100.000	93	0	0	1	93	1	93	7.08e-63	194

TFs/TRs:

Gene ID	Type	Classification
MsaG000181	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000181	MsaG000706	0.825206	9.440976e-54	2.388292e-51
MsaG000181	MsaG000968	0.837782	7.786405e-57	2.836684e-54
MsaG000181	MsaG002496	0.825011	1.048762e-53	2.638997e-51
MsaG000181	MsaG002558	0.808749	4.528933e-50	7.504697e-48
MsaG000181	MsaG003688	0.805153	2.588252e-49	3.937962e-47
MsaG000181	MsaG004003	0.819950	1.553519e-52	3.412266e-50
MsaG000181	MsaG004084	0.821719	6.113863e-53	1.407312e-50
MsaG000181	MsaG004654	0.807337	9.020928e-50	1.444866e-47
MsaG000181	MsaG004943	0.800896	1.946031e-48	2.684811e-46
MsaG000181	MsaG005078	0.801022	1.834113e-48	2.537683e-46
MsaG000181	MsaG005420	0.807807	7.177998e-50	1.162706e-47
MsaG000181	MsaG006085	0.829640	8.255007e-55	2.364611e-52
MsaG000181	MsaG006940	0.802964	7.349245e-49	1.062856e-46
MsaG000181	MsaG007030	0.810149	2.275510e-50	3.899973e-48
MsaG000181	MsaG007279	0.801511	1.458031e-48	2.039801e-46
MsaG000181	MsaG007300	0.800060	2.874576e-48	3.891891e-46
MsaG000181	MsaG007403	0.814044	3.248031e-51	6.129450e-49
MsaG000181	MsaG008003	0.826726	4.126518e-54	1.088922e-51
MsaG000181	MsaG008239	0.829714	7.920898e-55	2.273642e-52
MsaG000181	MsaG009075	0.819136	2.377374e-52	5.111152e-50
MsaG000181	MsaG010637	0.837259	1.059170e-56	3.797132e-54
MsaG000181	MsaG010854	0.812142	8.450511e-51	1.520732e-48
MsaG000181	MsaG012389	0.807290	9.226230e-50	1.476104e-47
MsaG000181	MsaG012814	0.801817	1.263083e-48	1.779412e-46
MsaG000181	MsaG013974	0.819836	1.648883e-52	3.610618e-50
MsaG000181	MsaG014465	0.836969	1.255298e-56	4.460825e-54
MsaG000181	MsaG016329	0.807475	8.434527e-50	1.355412e-47
MsaG000181	MsaG016664	0.802342	9.862375e-49	1.406158e-46
MsaG000181	MsaG016816	0.831338	3.186609e-55	9.583175e-53
MsaG000181	MsaG017119	0.805322	2.387028e-49	3.646063e-47
MsaG000181	MsaG017187	0.863470	4.834155e-64	4.298052e-61
MsaG000181	MsaG017221	0.831060	3.726143e-55	1.111612e-52
MsaG000181	MsaG017290	0.832573	1.583918e-55	4.937847e-53
MsaG000181	MsaG018897	0.823236	2.726638e-53	6.537492e-51
MsaG000181	MsaG019118	0.847344	2.316247e-59	1.147388e-56
MsaG000181	MsaG019122	0.830212	5.996499e-55	1.745970e-52
MsaG000181	MsaG019187	0.805155	2.586462e-49	3.935438e-47
MsaG000181	MsaG020476	0.821874	5.632743e-53	1.301877e-50
MsaG000181	MsaG023641	0.829709	7.940750e-55	2.279066e-52
MsaG000181	MsaG023950	0.834608	4.943750e-56	1.636676e-53
MsaG000181	MsaG024615	0.822865	3.323642e-53	7.889660e-51
MsaG000181	MsaG026754	0.850041	4.175764e-60	2.266213e-57
MsaG000181	MsaG027725	0.811564	1.127929e-50	2.001209e-48
MsaG000181	MsaG028192	0.849677	5.272768e-60	2.826607e-57
MsaG000181	MsaG028620	0.887856	2.152612e-72	5.683590e-69
MsaG000181	MsaG028754	0.807330	9.050457e-50	1.449353e-47
MsaG000181	MsaG028802	0.804485	3.563273e-49	5.338002e-47
MsaG000181	MsaG029147	0.864375	2.536007e-64	2.336862e-61
MsaG000181	MsaG029580	0.803645	5.320025e-49	7.815824e-47
MsaG000181	MsaG030196	0.814197	3.006265e-51	5.695253e-49
MsaG000181	MsaG030231	0.843081	3.251355e-58	1.399772e-55
MsaG000181	MsaG030681	0.804739	3.155897e-49	4.755604e-47
MsaG000181	MsaG041072	0.827812	2.273486e-54	6.184491e-52
MsaG000181	MsaG041299	0.814190	3.017384e-51	5.715202e-49
MsaG000181	MsaG043695	0.848430	1.166462e-59	5.992510e-57
MsaG000181	MsaG044611	0.807908	6.833548e-50	1.109637e-47
MsaG000181	MsaG045630	0.816306	1.027174e-51	2.052535e-49
MsaG000181	MsaG045811	0.811405	1.220483e-50	2.157032e-48
MsaG000181	MsaG045822	0.809709	2.826968e-50	4.793805e-48
MsaG000181	MsaG046643	0.802531	9.020067e-49	1.291626e-46
MsaG000181	MsaG046771	0.826248	5.357044e-54	1.394929e-51
MsaG000181	MsaG046865	0.820281	1.305927e-52	2.893749e-50
MsaG000181	MsaG002348	0.800709	2.123450e-48	2.917448e-46
MsaG000181	MsaG001756	0.811212	1.343335e-50	2.362974e-48
MsaG000181	MsaG000001	0.809005	3.995782e-50	6.661898e-48
MsaG000181	MsaG002578	0.818075	4.128204e-52	8.633149e-50
MsaG000181	MsaG008811	0.858780	1.274115e-62	9.458804e-60
MsaG000181	MsaG009124	0.802887	7.620882e-49	1.100201e-46
MsaG000181	MsaG007870	0.810304	2.107284e-50	3.625440e-48
MsaG000181	MsaG011899	0.821380	7.318912e-53	1.669533e-50
MsaG000181	MsaG011821	0.820391	1.232676e-52	2.739328e-50
MsaG000181	MsaG027840	0.853352	4.862877e-61	2.962253e-58
MsaG000181	MsaG030561	0.804752	3.136343e-49	4.727679e-47
MsaG000181	MsaG032991	0.840319	1.726830e-57	6.809117e-55
MsaG000181	MsaG032445	0.824322	1.522073e-53	3.758686e-51
MsaG000181	MsaG037527	0.807618	7.870095e-50	1.269015e-47
MsaG000181	MsaG036408	0.842703	4.093747e-58	1.741264e-55
MsaG000181	MsaG043306	0.837289	1.040296e-56	3.733010e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000181	MtrunA17_Chr1g0155181	100.000	86	0	0	1	86	1	86	1.59e-61	181
MsaG000181	MtrunA17_Chr3g0141601	73.404	94	21	2	1	93	1	91	8.20e-45	139
MsaG000181	MtrunA17_Chr3g0144631	73.134	67	18	0	5	71	14	80	2.21e-34	112
MsaG000181	MtrunA17_Chr3g0081631	57.447	94	33	3	1	93	4	91	2.51e-32	108
MsaG000181	MtrunA17_Chr7g0255841	57.647	85	30	1	9	93	14	92	1.43e-30	103
MsaG000181	MtrunA17_Chr3g0141641	47.253	91	45	1	6	93	2	92	9.66e-29	99.0
MsaG000181	MtrunA17_Chr5g0404101	65.217	69	24	0	2	70	14	82	1.82e-28	98.6
MsaG000181	MtrunA17_Chr6g0449111	58.571	70	29	0	2	71	5	74	3.15e-28	97.4
MsaG000181	MtrunA17_Chr8g0373111	55.224	67	29	1	4	70	2	67	6.22e-26	91.3
MsaG000181	MtrunA17_Chr8g0373121	55.224	67	29	1	4	70	2	67	6.22e-26	91.3
MsaG000181	MtrunA17_Chr8g0373131	55.224	67	29	1	4	70	2	67	6.25e-26	91.3
MsaG000181	MtrunA17_Chr8g0373101	56.338	71	30	1	4	74	2	71	4.04e-24	86.7
MsaG000181	MtrunA17_Chr5g0404301	61.905	63	23	1	5	67	2	63	5.85e-24	86.3
MsaG000181	MtrunA17_Chr1g0162081	50.602	83	41	0	1	83	6	88	2.61e-23	90.5
MsaG000181	MtrunA17_Chr8g0364741	53.623	69	32	0	1	69	4	72	5.25e-22	83.2
MsaG000181	MtrunA17_Chr8g0365011	57.576	66	28	0	4	69	5	70	1.73e-21	85.1
MsaG000181	MtrunA17_Chr5g0436501	55.882	68	30	0	2	69	22	89	1.75e-21	85.1
MsaG000181	MtrunA17_Chr3g0104071	52.113	71	34	0	4	74	40	110	2.85e-20	82.4
MsaG000181	MtrunA17_Chr5g0429521	51.389	72	34	1	4	75	26	96	3.16e-20	82.4
MsaG000181	MtrunA17_Chr7g0241761	50.000	72	36	0	2	73	30	101	1.35e-19	80.5
MsaG000181	MtrunA17_Chr4g0062741	48.000	75	35	2	1	71	1	75	1.12e-17	75.5
MsaG000181	MtrunA17_Chr1g0210471	42.254	71	41	0	7	77	24	94	1.84e-16	71.2
MsaG000181	MtrunA17_Chr1g0194071	49.153	59	29	1	5	62	9	67	2.13e-14	62.8
MsaG000181	MtrunA17_Chr7g0270711	47.619	63	32	1	3	64	7	69	1.80e-13	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000181	AT4G39250.1	58.621	87	36	0	7	93	14	100	6.09e-36	117
MsaG000181	AT1G75250.1	72.464	69	19	0	2	70	7	75	2.12e-33	112
MsaG000181	AT1G75250.2	72.464	69	19	0	2	70	7	75	2.52e-33	111
MsaG000181	AT2G21650.1	55.682	88	38	1	7	93	14	101	1.28e-31	107
MsaG000181	AT1G19510.1	69.841	63	19	0	10	72	15	77	1.60e-28	99.0
MsaG000181	AT2G18328.1	65.079	63	22	0	10	72	14	76	5.40e-27	94.7
MsaG000181	AT5G05790.2	52.632	76	35	1	4	79	28	102	2.50e-21	85.1
MsaG000181	AT5G05790.1	52.632	76	35	1	4	79	28	102	2.50e-21	85.1
MsaG000181	AT5G58900.1	53.030	66	31	0	4	69	31	96	2.66e-20	82.4
MsaG000181	AT2G38090.1	55.556	63	28	0	7	69	29	91	3.30e-20	82.4
MsaG000181	AT3G11280.2	49.315	73	37	0	7	79	33	105	3.41e-19	79.3
MsaG000181	AT3G11280.1	49.315	73	37	0	7	79	33	105	3.41e-19	79.3
MsaG000181	AT4G36570.1	72.727	44	12	0	7	50	12	55	5.09e-19	73.9
MsaG000181	AT5G08520.1	43.590	78	44	0	1	78	6	83	1.16e-16	72.8
MsaG000181	AT1G49010.1	43.836	73	38	1	2	71	3	75	8.26e-16	70.9
MsaG000181	AT5G23650.1	46.377	69	37	0	1	69	7	75	5.00e-14	65.9
MsaG000181	AT5G01200.1	43.662	71	39	1	5	74	28	98	1.60e-13	63.9
MsaG000181	AT5G04760.1	40.299	67	39	1	3	69	2	67	6.58e-13	62.0

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTGCAGCATTTCTGTATT+TGG	0.079428	1:+2390448	None:intergenic
GCTAGCTTCTGCCACCTATC+TGG	0.154946	1:+2390569	None:intergenic
AGAAATGCTGCAACAATTAA+AGG	0.224298	1:-2390440	MsaT000181.1:CDS
CTAGCTTCTGCCACCTATCT+GGG	0.322954	1:+2390570	None:intergenic
GTTGCAGCATTTCTGTATTT+GGG	0.335288	1:+2390449	None:intergenic
CAAAAGATTTGAGAATGCTT+TGG	0.369296	1:-2390612	MsaT000181.1:CDS
TGGGGTGTCCTTATCATAGA+TGG	0.425086	1:+2390589	None:intergenic
TGAAGATTTGAAGCAAATTG+AGG	0.447717	1:-2390489	MsaT000181.1:CDS
TGCTTTGGCCATCTATGATA+AGG	0.453055	1:-2390597	MsaT000181.1:CDS
ATAGGTGGCAGAAGCTAGCA+AGG	0.504876	1:-2390565	MsaT000181.1:CDS
CAGAAGCTAGCAAGGGCTGT+TGG	0.521879	1:-2390557	MsaT000181.1:CDS
GCATTTCTGTATTTGGGCAA+AGG	0.525051	1:+2390455	None:intergenic
ATGATAAGGACACCCCAGAT+AGG	0.538561	1:-2390583	MsaT000181.1:CDS
TTCTGTCAATACTTCACTGA+AGG	0.539972	1:+2389798	None:intergenic
AAGCTAGCAAGGGCTGTTGG+AGG	0.552500	1:-2390554	MsaT000181.1:CDS
GAATGTCCTCAAGTTCAGCT+TGG	0.559569	1:-2390649	MsaT000181.1:CDS
AGCTAGCAAGGGCTGTTGGA+GGG	0.566835	1:-2390553	MsaT000181.1:CDS
AGACAGTTGAGGAAGTGAAA+AGG	0.586038	1:-2390529	MsaT000181.1:CDS
TGTTGTCCAAGCTGAACTTG+AGG	0.595382	1:+2390643	None:intergenic
GATTTGAAGCAAATTGAGGA+AGG	0.610917	1:-2390485	MsaT000181.1:CDS
TAGCTTCTGCCACCTATCTG+GGG	0.629096	1:+2390571	None:intergenic
TAGGTGGCAGAAGCTAGCAA+GGG	0.655725	1:-2390564	MsaT000181.1:CDS
ATAAGGACACCCCAGATAGG+TGG	0.660087	1:-2390580	MsaT000181.1:CDS
ATTACAGTGACGAAGAACAA+AGG	0.662329	1:-2390412	MsaT000181.1:intron
TGTTGGAGGGAAGACAGTTG+AGG	0.663833	1:-2390540	MsaT000181.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	2389811	2390669	2389811	ID=MsaG000181
Chr1	mRNA	2389811	2390669	2389811	ID=MsaT000181.1;Parent=MsaG000181
Chr1	exon	2389811	2389835	2389811	ID=MsaT000181.1.exon2;Parent=MsaT000181.1
Chr1	CDS	2389811	2389835	2389811	ID=cds.MsaT000181.1;Parent=MsaT000181.1
Chr1	exon	2390413	2390669	2390413	ID=MsaT000181.1.exon1;Parent=MsaT000181.1
Chr1	CDS	2390413	2390669	2390413	ID=cds.MsaT000181.1;Parent=MsaT000181.1

Gene Sequence	>MsaT000181.1 ATGTCCTCAAGTTCAGCTTGGACAACAAAGCAAAACAAAAGATTTGAGAATGCTTTGGCCATCTATGATAAGGACACCCCAGATAGGTGGCAGAAGCTAGCAAGGGCTGTTGGAGGGAAGACAGTTGAGGAAGTGAAAAGGCATTATGAGATGTTAGTTGAAGATTTGAAGCAAATTGAGGAAGGTCATGTTCCTTTGCCCAAATACAGAAATGCTGCAACAATTAAAGGTTACAATTACAGTGACGAAGAACAAAGGTTGAAGTATCTAAGCCTTCAGTGA
Protein sequence	>MsaT000181.1 MSSSSAWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPKYRNAATIKGYNYSDEEQRLKYLSLQ*