AlfalfaGEDB | MsaG000222

M. sativa ssp. caerulea / MsaG000222

KEGG: -
GO: -
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000222	XP_013466044.1	96.845	634	20	0	1	634	1	634	0.0	1266

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000222	sp\|O64825\|LYK4_ARATH	38.889	630	332	15	6	615	6	602	1.55e-122	379

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000222	A0A072VF56	96.845	634	20	0	1	634	1	634	0.0	1266

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000222	MsaG000285	0.829069	1.134260e-54	3.196256e-52
MsaG000222	MsaG000977	0.808287	5.678598e-50	9.305138e-48
MsaG000222	MsaG001273	0.845773	6.190254e-59	2.909757e-56
MsaG000222	MsaG002137	0.831748	2.528490e-55	7.696431e-53
MsaG000222	MsaG002678	0.836468	1.681963e-56	5.887682e-54
MsaG000222	MsaG002718	0.824341	1.506440e-53	3.722035e-51
MsaG000222	MsaG003399	0.817417	5.801028e-52	1.192782e-49
MsaG000222	MsaG004422	0.801621	1.384679e-48	1.942028e-46
MsaG000222	MsaG005005	0.838301	5.735115e-57	2.123048e-54
MsaG000222	MsaG005006	0.800304	2.565827e-48	3.492937e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000222	MtrunA17_Chr1g0154511	96.845	634	20	0	1	634	1	634	0.0	1266
MsaG000222	MtrunA17_Chr5g0403381	39.394	627	346	9	23	633	28	636	1.01e-135	411
MsaG000222	MtrunA17_Chr5g0439334	37.037	648	363	13	20	634	20	655	6.21e-125	384
MsaG000222	MtrunA17_Chr3g0119351	34.823	649	371	16	16	630	41	671	7.20e-108	340
MsaG000222	MtrunA17_Chr7g0248904	29.516	620	389	15	43	630	54	657	1.26e-77	260
MsaG000222	MtrunA17_Chr7g0248881	29.887	619	384	14	24	610	25	625	1.10e-74	252
MsaG000222	MtrunA17_Chr5g0403371	31.404	570	315	19	57	607	46	558	1.29e-67	231
MsaG000222	MtrunA17_Chr5g0418011	41.924	291	150	8	331	614	17	295	1.98e-66	220
MsaG000222	MtrunA17_Chr4g0028801	28.616	643	377	25	2	613	11	602	1.43e-62	218
MsaG000222	MtrunA17_Chr2g0289131	30.427	539	321	14	107	615	79	593	1.79e-62	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000222	AT2G23770.1	38.889	630	332	15	6	615	6	602	1.58e-123	379
MsaG000222	AT2G33580.1	35.693	678	360	18	4	632	12	662	1.09e-116	363
MsaG000222	AT3G21630.1	29.889	542	314	15	102	610	82	590	7.49e-58	206
MsaG000222	AT3G01840.1	26.572	636	359	23	35	613	34	618	1.91e-55	200
MsaG000222	AT1G15530.1	34.839	310	170	10	333	624	349	644	2.05e-48	180
MsaG000222	AT1G67720.1	34.451	328	196	7	294	610	557	876	9.65e-48	181
MsaG000222	AT1G72300.1	37.124	299	162	9	337	619	795	1083	1.19e-47	181
MsaG000222	AT4G29990.1	34.048	373	206	12	254	610	494	842	1.79e-47	179
MsaG000222	AT1G51940.1	34.884	301	175	6	332	613	328	626	9.17e-46	172
MsaG000222	AT5G53890.1	35.197	304	177	8	331	621	740	1036	1.34e-45	174

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Find 135 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGATCTTTAAGGGAA+TGG	0.495872	1:+2930836	MsaT000222.1:CDS
AAAATGGATGTCTATGCCTT+TGG	0.406697	1:+2931153	MsaT000222.1:CDS
AAAGAGAATACAAATTGCTT+TGG	0.418896	1:+2930897	MsaT000222.1:CDS
AAAGGCATAGACATCCATTT+TGG	0.296150	1:-2931151	None:intergenic
AAATCCTACAACATGTGATG+TGG	0.577940	1:-2931082	None:intergenic
AACACACAGAACCAGCAGTG+AGG	0.735313	1:-2930425	None:intergenic
AACGAGCTAGCCAGAATCAA+CGG	0.575521	1:+2929854	MsaT000222.1:CDS
AACGGAGTTATAAGGTAGTG+TGG	0.572732	1:-2929798	None:intergenic
AAGAAGTCAATTTGCTGAAA+AGG	0.382262	1:+2930734	MsaT000222.1:CDS
AAGCAGACCAAACATTGAAG+AGG	0.638546	1:+2931395	MsaT000222.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	2929602	2931506	2929602	ID=MsaG000222
Chr1	mRNA	2929602	2931506	2929602	ID=MsaT000222.1;Parent=MsaG000222
Chr1	exon	2929602	2931506	2929602	ID=MsaT000222.1.exon1;Parent=MsaT000222.1
Chr1	CDS	2929602	2931506	2929602	ID=cds.MsaT000222.1;Parent=MsaT000222.1

Gene Sequence

>MsaT000222.1

ATGAATCAAGTTGTGTTTAACCTCATTTTCTTCACATTGAGCATGCTTCATTCATCAAAAACAAAGGCACAACAGAATTACTCAGGAAATTCAATACTCAGCTGCAAGAACAACGATGATGCGGGACCTTCATCGGCATTCCTTTACACCTGCAATGGCCTCAACAAATCATGCATGACCTATCTAACCTTCAAATCCACACTACCTTATAACTCCGTTTCCACAATTTCCAGCCTTACTTCATCAAACCCGAACGAGCTAGCCAGAATCAACGGCGCCACTTTGCTCACTGTTTTTCCATCTGGTAAAGATGTTATTGTCCCTGTGAACTGTTCTTGTTTAACCAATGATTATTACCAAGCTGAAACCAAATATATATTGGGTCCAAACCCAACATATTTCATAGTAGCAAATGACACGTTCCAGGGTTTGTCGACATGTGATTCTCTTATGCGTGCGAATCCGTATGGAGAACTTGATTTGCTTCGAGGAATGGAGTTGAATGTGCCACTCCGATGCGCTTGTCCAACATATCATCAGAAAACAAATGGCACCAAGTACTTACTCACATATTCTGTGACCTGGGGTGATAACATTTCAAATATTGCTACAAGATTCAATGTAGCAGTAGGTAATCTAATTGATGCCAATGGTTTTTCCACACAAACTGAACTCCTTTTTCCATTCACAACTGTTCTGATTCCTTTGGCAAGTGAACCAGTGAGTTTAACAACTATAGTTGCTAATGATCCACCAACCCCTCTCGGTTGCAGCTTCAAAAAGTGCAAGTCTAACACAAAAGTACTCCTTATTGCTTTAACCACCTCACTGCTGGTTCTGTGTGTTTTCTTGTTTGTGCTGTTTCTGATTTGGTTTCTACTCAGAAAGAGATCAGCGAGGTTTGTTAAGCAATGTATGCAAGTTAACAATAAAAATGTGGTGTTTTCAGAAGAGATCCGTGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGCTTTGAGGAAATAAAAGAAGCAACTGAGAATTTTAGTTCAAAGAATAGAATCAAAGGTTCTTTATTTCGCGGCATATTCAACAATGGCAAGGAAGTGTTGGCTGTTAAAAGAATGAGAGGAGATGCTTCCAAAGAAGTCAATTTGCTGAAAAGGATCAATCATTTCAACTTGATAAAGCTGCAAGGTTACTGTGAAAACGATGCTTGCATCTATCTTGTCTATGAATACATGGAAAATGGATCTTTAAGGGAATGGCTTAGCAAGGATAGTTCCATTGAACACCAAAGTTGGGCAAAGAGAATACAAATTGCTTTGGATATTGCCAATGGACTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTACACAAGGACATAAACAGTGGAAACATTCTACTAAACAAAGATTTAAGGGCCAAGATAGCAAAATTTGCTCATGCTGAAGAATCAAAAAGGATGATAACTTCTGGTTCTCCCACATCACATGTTGTAGGATTTATGGGCTATTTGGCTCCTGAGTATCTGGAGGCACGGGTAGTCAGTACCAAAATGGATGTCTATGCCTTTGGAGTCGTGCTGTTGGAATTGATCACCGGCAATGATTCTATTACCCTACAAGATGGAAGAGAAGTGATGCTTTATGAAATCATACAAAACATCATTGGACAGGATAATGAAGAAGAGAAGGTGAGCTTGTTCATTGATCCTTGCCTCATCGAAAGCTGTAGGAAAGCCTGTGCACTGCAGCTAGTTAAACTGAGCCTAGCCTGCTTGATCCAAGAACCAGAAAGCAGACCAAACATTGAAGAGGTGGTCTCTAGCTTATTGAAAATACAGGCAAATGATATGCAACAGAGAATATCACCCAGCATCAATAAAAGTTTAAGCTTGGAGAGGTGA

Protein sequence

>MsaT000222.1

MNQVVFNLIFFTLSMLHSSKTKAQQNYSGNSILSCKNNDDAGPSSAFLYTCNGLNKSCMTYLTFKSTLPYNSVSTISSLTSSNPNELARINGATLLTVFPSGKDVIVPVNCSCLTNDYYQAETKYILGPNPTYFIVANDTFQGLSTCDSLMRANPYGELDLLRGMELNVPLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVAVGNLIDANGFSTQTELLFPFTTVLIPLASEPVSLTTIVANDPPTPLGCSFKKCKSNTKVLLIALTTSLLVLCVFLFVLFLIWFLLRKRSARFVKQCMQVNNKNVVFSEEIREEIAIIEHLSKVYSFEEIKEATENFSSKNRIKGSLFRGIFNNGKEVLAVKRMRGDASKEVNLLKRINHFNLIKLQGYCENDACIYLVYEYMENGSLREWLSKDSSIEHQSWAKRIQIALDIANGLQYLHNFTEPCYVHKDINSGNILLNKDLRAKIAKFAHAEESKRMITSGSPTSHVVGFMGYLAPEYLEARVVSTKMDVYAFGVVLLELITGNDSITLQDGREVMLYEIIQNIIGQDNEEEKVSLFIDPCLIESCRKACALQLVKLSLACLIQEPESRPNIEEVVSSLLKIQANDMQQRISPSINKSLSLER*