AlfalfaGEDB | MsaG000223

M. sativa ssp. caerulea / MsaG000223

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0010154 GO:0016787 GO:0019538 GO:0022414 GO:0032182 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0042127 GO:0043130 GO:0043170 GO:0044238 GO:0045926 GO:0046620 GO:0046621 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1905392 GO:1905623 GO:2000024 GO:2000026
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000223	XP_013466041.1	99.360	469	3	0	1	469	1	469	0.0	981

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000223	sp\|P0C7Q8\|DA1_ARATH	60.600	533	143	9	1	468	1	531	0.0	615

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000223	A0A072VE38	99.360	469	3	0	1	469	1	469	0.0	981

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000223	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000223	MsaG000436	0.813514	4.246012e-51	7.907185e-49
MsaG000223	MsaG001133	0.803692	5.200677e-49	7.649121e-47
MsaG000223	MsaG001810	0.899082	6.452982e-77	3.127897e-73
MsaG000223	MsaG003329	0.802568	8.863567e-49	1.270301e-46
MsaG000223	MsaG003422	0.804053	4.380264e-49	6.496796e-47
MsaG000223	MsaG003869	0.822371	4.325805e-53	1.013238e-50
MsaG000223	MsaG004070	0.856139	7.638527e-62	5.143011e-59
MsaG000223	MsaG004096	0.830107	6.358384e-55	1.845839e-52
MsaG000223	MsaG005280	0.801552	1.430096e-48	2.002611e-46
MsaG000223	MsaG005897	0.817494	5.574459e-52	1.148473e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000223	MtrunA17_Chr1g0154501	99.360	469	3	0	1	469	1	469	0.0	981
MsaG000223	MtrunA17_Chr8g0373781	58.192	531	159	9	1	468	1	531	0.0	576
MsaG000223	MtrunA17_Chr5g0436051	52.510	478	211	7	1	468	144	615	1.07e-171	496
MsaG000223	MtrunA17_Chr3g0112601	51.313	495	201	12	1	468	31	512	2.39e-161	466
MsaG000223	MtrunA17_Chr5g0403261	50.820	366	102	4	1	288	1	366	1.18e-123	365
MsaG000223	MtrunA17_Chr5g0403301	62.542	299	85	3	178	468	27	306	4.07e-122	358
MsaG000223	MtrunA17_Chr5g0403271	68.874	151	42	1	323	468	3	153	2.38e-62	199
MsaG000223	MtrunA17_Chr5g0403291	56.818	88	38	0	106	193	379	466	1.02e-31	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000223	AT1G19270.1	60.600	533	143	9	1	468	1	531	0.0	615
MsaG000223	AT1G19270.2	60.600	533	143	9	1	468	1	531	0.0	615
MsaG000223	AT4G36860.3	63.908	435	142	6	43	468	149	577	0.0	560
MsaG000223	AT4G36860.1	63.908	435	142	6	43	468	125	553	0.0	559
MsaG000223	AT2G39830.1	52.965	489	199	9	1	468	49	527	2.32e-171	492
MsaG000223	AT2G39830.3	53.125	480	203	7	1	468	49	518	6.92e-171	491
MsaG000223	AT2G39830.2	52.642	492	199	10	1	468	49	530	2.96e-169	487
MsaG000223	AT4G36860.2	64.329	328	108	4	43	365	125	448	9.77e-155	447
MsaG000223	AT2G39830.4	51.444	381	159	8	1	365	49	419	4.35e-130	384
MsaG000223	AT5G66610.3	46.556	421	202	8	54	462	15	424	2.42e-115	346

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Find 123 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATCTCCATAAACAG+GGG	0.693477	1:+2932283	None:intergenic
AACTACCCGTCACCTTGATA+TGG	0.383599	1:+2932210	None:intergenic
AACTCATACCTGTACCCCAT+CGG	0.520543	1:+2937133	None:intergenic
AAGGACCCTTCACCATATCA+AGG	0.581020	1:-2932222	MsaT000223.1:CDS
AATAATGCTGGTTCCAGAAT+GGG	0.483891	1:+2934466	None:intergenic
AATAGAAGAAAGTCTAAATT+TGG	0.307251	1:-2937209	MsaT000223.1:CDS
AATATAGGGCACACCCATTC+TGG	0.293148	1:-2934479	MsaT000223.1:CDS
ACAAGCACTGAATGAAGCGA+GGG	0.649587	1:-2934095	MsaT000223.1:CDS
ACAAGTACCCCTGAAGTTGA+CGG	0.527470	1:+2938112	None:intergenic
ACCAATTCAGTATTTCCCGA+TGG	0.560239	1:-2937149	MsaT000223.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	2932199	2938221	2932199	ID=MsaG000223
Chr1	mRNA	2932199	2938221	2932199	ID=MsaT000223.1;Parent=MsaG000223
Chr1	exon	2932199	2932515	2932199	ID=MsaT000223.1.exon11;Parent=MsaT000223.1
Chr1	CDS	2932199	2932515	2932199	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2932710	2932768	2932710	ID=MsaT000223.1.exon10;Parent=MsaT000223.1
Chr1	CDS	2932710	2932768	2932710	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2933303	2933415	2933303	ID=MsaT000223.1.exon9;Parent=MsaT000223.1
Chr1	CDS	2933303	2933415	2933303	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2933655	2933711	2933655	ID=MsaT000223.1.exon8;Parent=MsaT000223.1
Chr1	CDS	2933655	2933711	2933655	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2934081	2934293	2934081	ID=MsaT000223.1.exon7;Parent=MsaT000223.1
Chr1	CDS	2934081	2934293	2934081	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2934410	2934529	2934410	ID=MsaT000223.1.exon6;Parent=MsaT000223.1
Chr1	CDS	2934410	2934529	2934410	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2935041	2935124	2935041	ID=MsaT000223.1.exon5;Parent=MsaT000223.1
Chr1	CDS	2935041	2935124	2935041	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2935241	2935361	2935241	ID=MsaT000223.1.exon4;Parent=MsaT000223.1
Chr1	CDS	2935241	2935361	2935241	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2937142	2937274	2937142	ID=MsaT000223.1.exon3;Parent=MsaT000223.1
Chr1	CDS	2937142	2937274	2937142	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2937912	2938002	2937912	ID=MsaT000223.1.exon2;Parent=MsaT000223.1
Chr1	CDS	2937912	2938002	2937912	ID=cds.MsaT000223.1;Parent=MsaT000223.1
Chr1	exon	2938120	2938221	2938120	ID=MsaT000223.1.exon1;Parent=MsaT000223.1
Chr1	CDS	2938120	2938221	2938120	ID=cds.MsaT000223.1;Parent=MsaT000223.1

Gene Sequence

>MsaT000223.1

ATGGGTTGGCTTAGTAGAATTTTTAAAGGGTCTGATCATAAGGTTTCTGAAGGGCATTATTATAAAGATGATGCGAGTTATTACTTGCCGTCAACTTCAGGGGATGATTGGACTGAGAACGAGAATGAAGACATTGATCGTGCTATTGCGTTGTCTTTGGTAGAAGAAAATCAGAAAGTGAAAAATGTAAAAGACCACAAATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCAATAGAAGAAAGTCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAACATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGCCGCTATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTTCCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAACACTGCCCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACGGGATATATTGCCCATAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTCGATTCTGCTATCATGGATACTAATGAATGTCAGCCCCTTCATGCTGATATACTGAAGTTTTATGAAAGCATAAATATGAAATTGAATCAGCAAGTTCCTCTACTTTTGGTTGAAAGACAAGCACTGAATGAAGCGAGGGAGGGGGAAAAGAATGGCCACTATCATATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTTTTTCAAGAAGACCTAGACTCGGCACAGGAAATAGAGACACGAGAGCACAGCCATACAAACTGACTGCGCGCTGTGATGTGACTGCAATTCTCATTCTATACGGTCTTCCAAGATTACTTACCGGATCGATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTAACAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATTTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCACCAGGCAGCAACTTTTCATCAGCCTCATCCTCATCTGCATCATATACATCTAAGACAGGTAAAAGACCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGAGCCGGTCAAAAAGCAGTTCGCAAGTATGGCCTAGAAAGGACCCTTCACCATATCAAGGTGACGGGTAGTTTCCCATATTAA

Protein sequence

>MsaT000223.1

MGWLSRIFKGSDHKVSEGHYYKDDASYYLPSTSGDDWTENENEDIDRAIALSLVEENQKVKNVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPFHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTARCCSCERMEPQGTGYIAHKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMKLNQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTFSRRPRLGTGNRDTRAQPYKLTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLTGFRTLSQDVEEGICQVLAHMWLESELSSAPGSNFSSASSSSASYTSKTGKRPPFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLERTLHHIKVTGSFPY*