AlfalfaGEDB | MsaG000244

M. sativa ssp. caerulea / MsaG000244

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000244	XP_003589270.2	94.550	844	39	3	1	842	1	839	0.0	1629

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000244	sp\|Q8RYD1\|REM16_ARATH	35.144	313	152	7	11	274	11	321	9.89e-42	159
MsaG000244	sp\|Q8RYD1\|REM16_ARATH	49.664	149	69	3	170	314	11	157	3.12e-39	152

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000244	G7I4K4	94.550	844	39	3	1	842	1	839	0.0	1629

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000244	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000244	MtrunA17_Chr1g0154101	94.550	844	39	3	1	842	1	839	0.0	1629
MsaG000244	MtrunA17_Chr1g0154131	59.934	604	108	8	1	602	1	472	0.0	688
MsaG000244	MtrunA17_Chr1g0154131	31.611	329	188	8	504	832	181	472	1.79e-34	138
MsaG000244	MtrunA17_Chr1g0154071	58.541	603	126	8	6	604	9	491	0.0	639
MsaG000244	MtrunA17_Chr1g0154071	62.275	167	58	2	2	168	134	295	1.11e-58	208
MsaG000244	MtrunA17_Chr1g0154071	67.857	140	44	1	159	297	3	142	3.34e-55	198
MsaG000244	MtrunA17_Chr1g0154071	30.347	346	221	9	501	834	154	491	6.47e-33	134
MsaG000244	MtrunA17_Chr1g0154041	78.701	385	81	1	458	842	209	592	0.0	616
MsaG000244	MtrunA17_Chr1g0154041	40.196	102	59	2	183	283	15	115	3.35e-16	82.8
MsaG000244	MtrunA17_Chr1g0154041	34.375	128	72	4	24	151	15	130	3.43e-14	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000244	AT4G33280.1	35.144	313	152	7	11	274	11	321	1.00e-42	159
MsaG000244	AT4G33280.1	49.664	149	69	3	170	314	11	157	3.17e-40	152
MsaG000244	AT4G33280.2	55.385	130	55	2	11	139	11	138	9.89e-41	152
MsaG000244	AT4G33280.2	52.344	128	60	1	170	296	11	138	3.34e-40	150
MsaG000244	AT4G33280.3	55.385	130	55	2	11	139	11	138	9.30e-40	152
MsaG000244	AT4G33280.3	52.344	128	60	1	170	296	11	138	2.70e-39	150
MsaG000244	AT4G34400.2	41.667	84	49	0	196	279	29	112	3.53e-17	85.1
MsaG000244	AT4G34400.2	38.372	86	53	0	39	124	29	114	5.11e-17	84.7
MsaG000244	AT4G34400.1	41.667	84	49	0	196	279	29	112	3.53e-17	85.1
MsaG000244	AT4G34400.1	38.372	86	53	0	39	124	29	114	5.11e-17	84.7

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Find 171 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGAGGTAAATGATT+GGG	0.509472	1:+3255953	None:intergenic
AAAAGATGGGTTAGACTCCC+AGG	0.502465	1:-3254945	MsaT000244.1:CDS
AAAATCTTTGGGAAGAAGTT+GGG	0.404051	1:+3259433	None:intergenic
AAACAAAGACAGCTGTACCG+AGG	0.720792	1:-3254414	MsaT000244.1:intron
AACAAAATATGGAAAAGAGG+AGG	0.585641	1:+3255941	None:intergenic
AACACCACCGGGACCTTTAA+GGG	0.419570	1:+3258452	None:intergenic
AACTCCACTAGGACCTTTAA+GGG	0.479312	1:+3259814	None:intergenic
AACTCCGTCCCATATGTTCA+AGG	0.509291	1:-3254034	MsaT000244.1:CDS
AACTTCATTAACAGACTTCT+TGG	0.252529	1:+3257753	None:intergenic
AAGCTCCACTGAGAATATCA+TGG	0.579465	1:+3256015	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	3253859	3261350	3253859	ID=MsaG000244
Chr1	mRNA	3253859	3261350	3253859	ID=MsaT000244.1;Parent=MsaG000244
Chr1	exon	3253859	3254146	3253859	ID=MsaT000244.1.exon8;Parent=MsaT000244.1
Chr1	CDS	3253859	3254146	3253859	ID=cds.MsaT000244.1;Parent=MsaT000244.1
Chr1	exon	3254255	3254424	3254255	ID=MsaT000244.1.exon7;Parent=MsaT000244.1
Chr1	CDS	3254255	3254424	3254255	ID=cds.MsaT000244.1;Parent=MsaT000244.1
Chr1	exon	3254693	3255209	3254693	ID=MsaT000244.1.exon6;Parent=MsaT000244.1
Chr1	CDS	3254693	3255209	3254693	ID=cds.MsaT000244.1;Parent=MsaT000244.1
Chr1	exon	3255899	3256074	3255899	ID=MsaT000244.1.exon5;Parent=MsaT000244.1
Chr1	CDS	3255899	3256074	3255899	ID=cds.MsaT000244.1;Parent=MsaT000244.1
Chr1	exon	3257656	3257814	3257656	ID=MsaT000244.1.exon4;Parent=MsaT000244.1
Chr1	CDS	3257656	3257814	3257656	ID=cds.MsaT000244.1;Parent=MsaT000244.1
Chr1	exon	3257896	3258529	3257896	ID=MsaT000244.1.exon3;Parent=MsaT000244.1
Chr1	CDS	3257896	3258529	3257896	ID=cds.MsaT000244.1;Parent=MsaT000244.1
Chr1	exon	3259421	3259891	3259421	ID=MsaT000244.1.exon2;Parent=MsaT000244.1
Chr1	CDS	3259421	3259891	3259421	ID=cds.MsaT000244.1;Parent=MsaT000244.1
Chr1	exon	3261234	3261350	3261234	ID=MsaT000244.1.exon1;Parent=MsaT000244.1
Chr1	CDS	3261234	3261350	3261234	ID=cds.MsaT000244.1;Parent=MsaT000244.1

Gene Sequence

>MsaT000244.1

ATGGGAGGAGCAGGTGGAAGCAGCAAATCTTGGGAGAAAGAGATTTACTGGACCCATTTTCAGTTCATTCATTTCATCCAATTTCTTCAAACCACCACCGATTTTCAACAACAACTTGCCCTTCCCAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGACAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATGTCGGGCTGACAGCTAGAGATGATACCATTTACTTCACAAATGGATGGCAAAGATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGGGAATCACTCTTTGAAGTTTTAATCTTTCATGGAGATAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGACAAGCTCATACTGAACAAGGGTGTAACAAGGGAAAAAGCTCCAATAATTCTGTTGAAGAAGTCAGTACTCCTTCTAATGGCGGTGTTGAATGCAGTTCGCCTGAAAAATCATGGGAGGAAGACATTTACTGGACCCATTTTCAGTTCATCCATTTCACCCAACTTCTTCCCAAAGATTTTAAGCAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAATAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCCGGTGGTGTTGCATGGAAAATAGGGCTCATAACTAGAGACGATACTGTTTACTTCGTGGACGGTTGGCAACGATTCGTGAACGATCACTCTTTGAAAGATAATGATTTCCTTGTCTTTAATTACAATGGTGAATCACACTTTGATGTTTTGATCTTTGATGGAGAAAGCTTCTGTGAGAAAGAAGCTTCTTATTTTGTCGGAAAATGCGGCCATACTCAAACTGAACTAGGGGGTAGCAAAGCAAAGGAAACAAACAATTCTATTGAAGAAGTCAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTTATATGAGAAATTTCAGGATCTTAACAATATAGGAACACCATTATCTGTACCTGTTGAAACTACCAATGAAAAGACTTTTAATGCTGGTGTCAAATCTGATTCCCCTGAGCAGTTCATAGCTGATACAGTCACTAAGACCACAGCTATACAGTTTCCCTACCAACCAACCGGAAAAAGGAGCAAGAGAAGATCATCGACATCAGCTAATTGTTGTTGGAGAGCACTTGACTGGGTGGCTTATAACAAGCAACACTCAGTCACTATAGCGGTTCCCTCCCATACAACCAACCAAAAGACCAAGAAGTCTGTTAATGAAGTTACGCCTGGCCGGAGTAAGAAGCGGGGAAGACAAGCAAAAACAGCTACTTCTGGCGAGAGAGCAATTGATTGGGTGGCTTGTAACAAGGAAAACTCAGAGGCAGCCATCCTGAATAGAAGTGGGAAGGCAGATGGCCATGATATTCTCAGTGGAGCTTCACTGTCTAAGTTATCACCACATGATGAGAAAGAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATGAAAACGTTCAATGTTGAACGTCCACGTATTCTGAATATTCCATATGAATTTTCGAAGGATCATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACAGTGGACCGTCAATTCTGTTCCTAGAACTAGATTGCATGCAAGTCACATTCTATGCGGAGGATGGTTGAATTTTGTTCGTGGCAATAGCCTAAAGATTGGAGATGTCTGTATTTTCGAACTTATAGGTGAGTGTGAATTACGTGTTCGCATCAATGAGGTTGGAAAAGATGGGTTAGACTCCCAGGTTGGAAAACTAGCTTGTAGTATGCTTAGTGCAAGACAGGATGTCGCTAGCCATAAGACTTCCAGATTTATGCCGAAGAAACATAAAATCAGCTCAAAGTGCAGTGCGGAAGTTGATCTATTAGATAAAAAGTTGTCAGAGATATGTCAAGAAGCTGCTTTATCCTCTGAGTTAAAGAAATCCGGTAGAGCTTCAAATACTTCGAAGAAGGCAGGGCTTTCCCCCAAGTCAAAAGCTGCCCATAAAAAGTCGGCTGTACCGAGGAAACACCATGTTGATGATGGACTAAGCTCCCAGGCTAATGATAGTTTGAAAATGTTGTTTGCACTCGACGAACAAAGAGTAGCTGAAGCTTTCACTTCCCCATTTCCATATTTTGTGAAAATCATGAAGAAGTTCAATGTCTGTGGATCATACACTTTGAAAATCCCATGCCAGTTCTCTACTGCACATCTCCCTGCTTGCAATACAGAAGTTACGCTTCGCAATTCAAGAGGCAAATGTTGGACTGTGAACTCCGTCCCATATGTTCAAGGGGAAACAACTATTCACACTTTTTGTGGCGGATGGAATGCCTTTGTTCGTGATAATGACATCAATTTTGGTGACACTTGTATTTTTGAGCTCGTTTCTGATTATGTGATGCACGTTCGTATATCTGGGGTTGGAAAGGAAGGTCTTGATCATCAAAATGGGAATGTGAAACAATAG

Protein sequence

>MsaT000244.1

MGGAGGSSKSWEKEIYWTHFQFIHFIQFLQTTTDFQQQLALPKTFSDNLKKKLPDNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLVFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQGCNKGKSSNNSVEEVSTPSNGGVECSSPEKSWEEDIYWTHFQFIHFTQLLPKDFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFVDGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVGKCGHTQTELGGSKAKETNNSIEEVNTASNGGVECGLYEKFQDLNNIGTPLSVPVETTNEKTFNAGVKSDSPEQFIADTVTKTTAIQFPYQPTGKRSKRRSSTSANCCWRALDWVAYNKQHSVTIAVPSHTTNQKTKKSVNEVTPGRSKKRGRQAKTATSGERAIDWVACNKENSEAAILNRSGKADGHDILSGASLSKLSPHDEKEIAQSFTSSFPYFVKIMKTFNVERPRILNIPYEFSKDHLPNCKIKIILHNLKGEQWTVNSVPRTRLHASHILCGGWLNFVRGNSLKIGDVCIFELIGECELRVRINEVGKDGLDSQVGKLACSMLSARQDVASHKTSRFMPKKHKISSKCSAEVDLLDKKLSEICQEAALSSELKKSGRASNTSKKAGLSPKSKAAHKKSAVPRKHHVDDGLSSQANDSLKMLFALDEQRVAEAFTSPFPYFVKIMKKFNVCGSYTLKIPCQFSTAHLPACNTEVTLRNSRGKCWTVNSVPYVQGETTIHTFCGGWNAFVRDNDINFGDTCIFELVSDYVMHVRISGVGKEGLDHQNGNVKQ*