AlfalfaGEDB | MsaG000321

M. sativa ssp. caerulea / MsaG000321

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000321	KEH41238.1	60.204	98	32	2	56	153	3	93	6.56e-30	115

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
MsaG000321	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG000321	0.828300	1.736065e-54	4.787670e-52
MsaG000015	MsaG000321	0.842597	4.366619e-58	1.851015e-55
MsaG000045	MsaG000321	0.844653	1.238734e-58	5.611961e-56
MsaG000083	MsaG000321	0.879735	2.061299e-69	3.674709e-66
MsaG000113	MsaG000321	0.866550	5.276463e-65	5.305445e-62
MsaG000128	MsaG000321	0.820701	1.046880e-52	2.345470e-50
MsaG000151	MsaG000321	0.881902	3.468476e-70	6.843824e-67
MsaG000153	MsaG000321	0.888513	1.206235e-72	3.292046e-69
MsaG000163	MsaG000321	0.854506	2.270239e-61	1.441080e-58
MsaG000179	MsaG000321	0.840229	1.822275e-57	7.164966e-55

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGACAAATGACAAA+AGG	0.501966	1:+4292059	None:intergenic
ACACTGCTATCAGAACTAAC+TGG	0.486063	1:-4292226	MsaT000321.1:CDS
ACCATCACCTTCATCAACCT+TGG	0.550147	1:+4291989	None:intergenic
ACTAGTGTTGCTGCTGAGCA+AGG	0.563406	1:-4291894	MsaT000321.1:CDS
ACTGCAAGACCGGATTCTGG+AGG	0.686245	1:-4292340	MsaT000321.1:CDS
AGTGTTGCTGCTGAGCAAGG+CGG	0.699580	1:-4291891	MsaT000321.1:CDS
AGTTACTCAGAAACCTATGG+GGG	0.734801	1:-4291934	MsaT000321.1:CDS
AGTTCTGATAGCAGTGTTGG+GGG	0.663335	1:+4292232	None:intergenic
ATGGATCTGGATGCTGAGTT+TGG	0.391512	1:-4292020	MsaT000321.1:CDS
CATCCAGATCCATCTTTGGT+GGG	0.591585	1:+4292030	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	4291321	4292432	4291321	ID=MsaG000321
Chr1	mRNA	4291321	4292432	4291321	ID=MsaT000321.1;Parent=MsaG000321
Chr1	exon	4291321	4291350	4291321	ID=MsaT000321.1.exon3;Parent=MsaT000321.1
Chr1	CDS	4291321	4291350	4291321	ID=cds.MsaT000321.1;Parent=MsaT000321.1
Chr1	exon	4291854	4292084	4291854	ID=MsaT000321.1.exon2;Parent=MsaT000321.1
Chr1	CDS	4291854	4292084	4291854	ID=cds.MsaT000321.1;Parent=MsaT000321.1
Chr1	exon	4292190	4292432	4292190	ID=MsaT000321.1.exon1;Parent=MsaT000321.1
Chr1	CDS	4292190	4292432	4292190	ID=cds.MsaT000321.1;Parent=MsaT000321.1

Gene Sequence

>MsaT000321.1

ATGAAGGATGTTCATACTCAATCTCAATGCCAAACGCAAAATTATCTCTTTCAACACATTGAGAGAAGACACTGCAAGACCGGATTCTGGAGGAAAAAGGGAGCTGTTCAAGACATCACTGGTGCTAGTAATGTTGTGTTGGGCAAGAAGACCCTGTTTATTTTTTATCTTGCAAGTTCCCCCAACACTGCTATCAGAACTAACTGGATAATGTATGAGCATGCTTTGGCTGACAAGCCTCAGGCTCCTTTTGTCATTTGTCGTGTTTTTGACTGCCCACCAAAGATGGATCTGGATGCTGAGTTTGGAGCGTTATCCAAGGTTGATGAAGGTGATGGTGCTAGAGATGACTCTGCTGACAAGATGAATGGAGTTACTCAGAAACCTATGGGGGCTGGGGATGGGGTTGGTACTAGTGTTGCTGCTGAGCAAGGCGGTGCTTCAAATTTCACAGATTTTGAAGGCACCCTGCAGCAGTTTATAATTTTCTCGTCTTTGAAGTAG

Protein sequence

>MsaT000321.1

MKDVHTQSQCQTQNYLFQHIERRHCKTGFWRKKGAVQDITGASNVVLGKKTLFIFYLASSPNTAIRTNWIMYEHALADKPQAPFVICRVFDCPPKMDLDAEFGALSKVDEGDGARDDSADKMNGVTQKPMGAGDGVGTSVAAEQGGASNFTDFEGTLQQFIIFSSLK*