AlfalfaGEDB | MsaG000377

M. sativa ssp. caerulea / MsaG000377

KEGG: K09377
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000377	XP_003589058.1	98.817	169	2	0	1	169	1	169	1.17e-121	351

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000377	sp\|Q94JX5\|WLIM1_ARATH	85.799	169	24	0	1	169	1	169	2.31e-108	310
MsaG000377	sp\|Q94JX5\|WLIM1_ARATH	44.444	72	40	0	3	74	103	174	7.37e-15	72.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000377	TF	LIM

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG000377	0.828430	1.616086e-54	4.473218e-52
MsaG000286	MsaG000377	0.836492	1.658425e-56	5.809530e-54
MsaG000377	MsaG000413	0.808284	5.685690e-50	9.316240e-48
MsaG000377	MsaG000570	0.822251	4.610970e-53	1.076527e-50
MsaG000377	MsaG000545	0.813873	3.542624e-51	6.657000e-49
MsaG000377	MsaG000801	0.808711	4.614747e-50	7.639799e-48
MsaG000377	MsaG000944	0.847281	2.410856e-59	1.191725e-56
MsaG000377	MsaG002061	0.806312	1.481939e-49	2.316901e-47
MsaG000377	MsaG002167	0.815197	1.809596e-51	3.515672e-49
MsaG000377	MsaG002213	0.805087	2.672032e-49	4.059124e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000377	MtrunA17_Chr1g0152431	98.817	169	2	0	1	169	1	169	1.08e-125	351
MsaG000377	MtrunA17_Chr1g0152431	42.553	94	51	2	3	96	103	193	1.49e-14	68.2
MsaG000377	MtrunA17_Chr4g0059371	66.667	168	55	1	2	169	3	169	2.96e-83	243
MsaG000377	MtrunA17_Chr4g0059371	45.833	72	39	0	3	74	103	174	2.45e-15	70.1
MsaG000377	MtrunA17_Chr3g0113051	59.064	171	66	2	1	169	1	169	2.43e-68	206
MsaG000377	MtrunA17_Chr3g0113051	47.826	69	36	0	3	71	103	171	2.75e-18	78.2
MsaG000377	MtrunA17_Chr8g0386501	54.386	171	66	4	1	169	1	161	2.56e-58	181
MsaG000377	MtrunA17_Chr8g0386501	41.414	99	54	1	3	101	95	189	3.84e-19	80.9
MsaG000377	MtrunA17_Chr7g0247111	50.888	169	79	2	1	169	1	165	4.46e-58	181
MsaG000377	MtrunA17_Chr7g0247111	46.377	69	37	0	3	71	99	167	2.23e-15	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000377	AT1G10200.1	85.799	169	24	0	1	169	1	169	2.35e-109	310
MsaG000377	AT1G10200.1	44.444	72	40	0	3	74	103	174	7.50e-16	72.0
MsaG000377	AT1G10200.2	82.400	125	22	0	45	169	3	127	1.85e-75	223
MsaG000377	AT1G10200.2	44.444	72	40	0	3	74	61	132	1.47e-16	72.8
MsaG000377	AT2G39900.1	58.480	171	66	2	1	169	1	168	3.50e-67	204
MsaG000377	AT2G39900.1	49.275	69	35	0	3	71	102	170	1.81e-18	79.0
MsaG000377	AT3G55770.3	55.491	173	67	2	1	169	1	167	2.89e-65	199
MsaG000377	AT3G55770.3	50.725	69	34	0	3	71	101	169	1.73e-19	81.6
MsaG000377	AT3G55770.5	55.491	173	67	2	1	169	1	167	2.89e-65	199
MsaG000377	AT3G55770.5	50.725	69	34	0	3	71	101	169	1.73e-19	81.6

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Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTCAAGTATGTTTGG+TGG	0.587944	1:+5090826	MsaT000377.1:CDS
AACAGTGTATCCAACAGAGA+AGG	0.613878	1:+5090879	MsaT000377.1:CDS
AAGTATGTTTGGTGGAACAA+GGG	0.641097	1:+5090834	MsaT000377.1:CDS
ACACTAATTACCTTCTCTGT+TGG	0.465114	1:-5090889	None:intergenic
AGAAAGAAATATAGATAATG+AGG	0.518674	1:+5090698	MsaT000377.1:CDS
AGCATTTGAAACAACTCTTA+TGG	0.319973	1:-5091202	None:intergenic
AGGAACAACTCAGAAGTGTA+TGG	0.560932	1:+5089952	MsaT000377.1:CDS
AGTTGTTTCAAATGCTGCCA+TGG	0.564010	1:+5091209	MsaT000377.1:CDS
ATATTCAACTGATCAAGCAA+AGG	0.664962	1:+5091297	MsaT000377.1:CDS
CAAGTATGTTTGGTGGAACA+AGG	0.495604	1:+5090833	MsaT000377.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	5089941	5091337	5089941	ID=MsaG000377
Chr1	mRNA	5089941	5091337	5089941	ID=MsaT000377.1;Parent=MsaG000377
Chr1	exon	5089941	5090075	5089941	ID=MsaT000377.1.exon1;Parent=MsaT000377.1
Chr1	CDS	5089941	5090075	5089941	ID=cds.MsaT000377.1;Parent=MsaT000377.1
Chr1	exon	5090481	5090577	5090481	ID=MsaT000377.1.exon2;Parent=MsaT000377.1
Chr1	CDS	5090481	5090577	5090481	ID=cds.MsaT000377.1;Parent=MsaT000377.1
Chr1	exon	5090676	5090719	5090676	ID=MsaT000377.1.exon3;Parent=MsaT000377.1
Chr1	CDS	5090676	5090719	5090676	ID=cds.MsaT000377.1;Parent=MsaT000377.1
Chr1	exon	5090811	5090900	5090811	ID=MsaT000377.1.exon4;Parent=MsaT000377.1
Chr1	CDS	5090811	5090900	5090811	ID=cds.MsaT000377.1;Parent=MsaT000377.1
Chr1	exon	5091179	5091337	5091179	ID=MsaT000377.1.exon5;Parent=MsaT000377.1
Chr1	CDS	5091179	5091337	5091179	ID=cds.MsaT000377.1;Parent=MsaT000377.1

Gene Sequence

>MsaT000377.1

ATGGCATTTGCAGGAACAACTCAGAAGTGTATGGCTTGTAGCAAAACAGTTTATCTTGTTGATAAGTTAACTGCTGATAATAGAATTTTCCACAAAGCTTGTTTCAGATGTCACCACTGCAAAGGAACCCTCAAGCTAAGCAACTACAATTCTTTTGAGGGAGTTCTTTACTGCAGACCACACTTTGATCAACTGTTCAAAAGAACTGGTAGCCTTGAAAAAAGCTTTGAAGGGACACCAAAAATTGTCAAACCAGAAAGAAATATAGATAATGAGAAACCTGCAGCAGCTAAAGCCTCAAGTATGTTTGGTGGAACAAGGGACAAATGTTCTGGTTGTCAGAAAACAGTGTATCCAACAGAGAAGGTTACAGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTACTATTAGTCCTTCCAATTACATAGCACATGAGGGAAAACTCTACTGCAAACACCACCATATTCAACTGATCAAGCAAAGGAAATTTGAGCCAGCTTGA

Protein sequence

>MsaT000377.1

MAFAGTTQKCMACSKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPERNIDNEKPAAAKASSMFGGTRDKCSGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKQRKFEPA*