AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG000410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000410 MtrunA17_Chr1g0152131 98.361 427 6 1 1 427 1 426 0.0 858
MsaG000410 MtrunA17_Chr5g0421111 54.726 201 63 5 195 391 299 475 2.53e-56 194
MsaG000410 MtrunA17_Chr8g0365941 41.768 328 136 10 93 391 114 415 1.00e-55 191
MsaG000410 MtrunA17_Chr7g0234761 39.752 322 152 8 75 355 91 411 1.76e-51 181
MsaG000410 MtrunA17_Chr3g0144641 46.890 209 79 4 233 409 163 371 1.72e-50 175
MsaG000410 MtrunA17_Chr8g0339091 38.701 354 160 15 88 391 81 427 5.88e-49 174
MsaG000410 MtrunA17_Chr4g0035101 70.093 107 30 1 244 348 124 230 3.19e-44 157
MsaG000410 MtrunA17_Chr8g0363921 47.475 198 96 4 171 360 53 250 2.52e-43 153
MsaG000410 MtrunA17_Chr3g0131771 66.981 106 32 1 243 345 129 234 1.80e-40 147
MsaG000410 MtrunA17_Chr8g0385911 73.626 91 21 1 258 345 142 232 6.45e-40 145
MsaG000410 MtrunA17_Chr7g0258161 68.041 97 31 0 250 346 162 258 1.25e-39 145
MsaG000410 MtrunA17_Chr5g0415291 60.484 124 44 2 209 332 65 183 1.20e-38 139
MsaG000410 MtrunA17_Chr1g0174161 63.918 97 35 0 250 346 149 245 2.95e-37 138
MsaG000410 MtrunA17_Chr6g0484271 60.000 100 39 1 241 340 136 234 3.29e-32 123
MsaG000410 MtrunA17_Chr4g0074161 60.241 83 32 1 244 326 189 270 2.42e-22 98.2
MsaG000410 MtrunA17_Chr1g0190731 67.164 67 21 1 260 326 192 257 6.10e-21 93.6
MsaG000410 MtrunA17_Chr4g0014771 58.462 65 27 0 261 325 118 182 1.47e-16 77.8
MsaG000410 MtrunA17_Chr2g0329041 43.158 95 46 1 247 333 310 404 4.03e-16 79.7
MsaG000410 MtrunA17_Chr1g0174271 52.055 73 35 0 259 331 296 368 4.33e-16 79.7
MsaG000410 MtrunA17_Chr7g0258181 52.113 71 34 0 261 331 243 313 5.91e-16 78.6
MsaG000410 MtrunA17_Chr4g0032951 56.716 67 29 0 259 325 353 419 6.10e-16 79.3
MsaG000410 MtrunA17_Chr1g0193321 47.945 73 37 1 263 335 464 535 1.11e-15 79.3
MsaG000410 MtrunA17_Chr1g0184841 51.579 95 45 1 232 326 91 184 3.50e-15 75.5
MsaG000410 MtrunA17_Chr1g0182791 52.174 69 32 1 263 331 319 386 4.82e-15 77.0
MsaG000410 MtrunA17_Chr3g0095391 41.284 109 59 3 222 326 266 373 7.60e-14 73.2
MsaG000410 MtrunA17_Chr3g0087771 47.761 67 35 0 259 325 320 386 6.05e-13 70.1
MsaG000410 MtrunA17_Chr7g0262691 40.000 100 56 2 230 326 218 316 7.82e-13 70.1
MsaG000410 MtrunA17_Chr7g0270871 48.387 62 31 1 272 333 213 273 2.46e-12 68.2
MsaG000410 MtrunA17_Chr1g0152651 50.769 65 31 1 261 325 274 337 3.23e-12 67.8
MsaG000410 MtrunA17_Chr1g0153241 46.154 65 34 1 263 327 87 150 5.40e-12 65.9
MsaG000410 MtrunA17_Chr8g0351881 39.506 81 41 1 253 325 300 380 5.74e-12 67.0
MsaG000410 MtrunA17_Chr7g0271251 53.125 64 29 1 263 326 434 496 1.27e-11 66.6
MsaG000410 MtrunA17_Chr3g0134741 51.562 64 30 1 262 325 230 292 2.22e-11 64.7
MsaG000410 MtrunA17_Chr7g0231461 48.438 64 32 1 261 324 297 359 6.72e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000410 AT1G10120.2 42.438 443 162 20 1 427 1 366 1.06e-76 243
MsaG000410 AT1G10120.1 42.438 443 162 20 1 427 1 366 1.06e-76 243
MsaG000410 AT1G68920.1 63.871 155 30 3 238 392 286 414 5.64e-55 190
MsaG000410 AT1G68920.4 63.871 155 30 3 238 392 286 414 5.64e-55 190
MsaG000410 AT1G68920.2 63.871 155 30 3 238 392 286 414 5.64e-55 190
MsaG000410 AT1G68920.3 63.871 155 30 3 238 392 285 413 5.64e-55 190
MsaG000410 AT1G26260.3 69.231 130 34 2 226 350 133 261 1.08e-51 177
MsaG000410 AT1G26260.5 64.583 144 45 2 212 350 148 290 2.04e-51 177
MsaG000410 AT1G26260.4 64.583 144 45 2 212 350 170 312 3.33e-51 177
MsaG000410 AT1G26260.1 64.583 144 45 2 212 350 170 312 3.33e-51 177
MsaG000410 AT1G26260.6 64.583 144 45 2 212 350 170 312 3.33e-51 177
MsaG000410 AT1G26260.2 64.583 144 45 2 212 350 170 312 3.33e-51 177
MsaG000410 AT3G07340.2 64.964 137 42 3 218 350 213 347 2.35e-48 171
MsaG000410 AT3G07340.1 64.964 137 42 3 218 350 213 347 3.82e-48 171
MsaG000410 AT3G23690.1 54.598 174 65 5 245 408 176 345 2.58e-46 164
MsaG000410 AT4G34530.1 70.408 98 29 0 250 347 161 258 3.52e-43 154
MsaG000410 AT5G48560.2 77.419 93 20 1 257 348 297 389 6.82e-43 157
MsaG000410 AT5G48560.1 77.419 93 20 1 257 348 297 389 1.18e-42 157
MsaG000410 AT5G50915.3 51.163 172 61 5 225 396 106 254 1.33e-42 151
MsaG000410 AT5G50915.4 51.163 172 61 5 225 396 106 254 1.33e-42 151
MsaG000410 AT5G50915.1 51.163 172 61 5 225 396 106 254 1.71e-42 151
MsaG000410 AT5G50915.2 51.163 172 61 5 225 396 106 254 1.71e-42 151
MsaG000410 AT4G36540.2 54.225 142 59 3 205 345 89 225 2.13e-40 146
MsaG000410 AT4G36540.1 54.225 142 59 3 205 345 89 225 2.36e-40 146
MsaG000410 AT1G59640.1 49.057 159 74 2 191 349 73 224 2.69e-40 145
MsaG000410 AT1G59640.2 48.734 158 74 2 191 348 73 223 4.54e-40 146
MsaG000410 AT2G18300.1 54.610 141 46 2 218 340 124 264 7.36e-40 145
MsaG000410 AT2G18300.2 54.610 141 46 2 218 340 124 264 7.62e-40 145
MsaG000410 AT2G18300.3 54.610 141 46 2 218 340 124 264 1.40e-39 145
MsaG000410 AT3G57800.2 37.066 259 124 5 126 346 32 289 5.87e-39 144
MsaG000410 AT2G42300.4 62.500 96 36 0 252 347 176 271 1.45e-37 138
MsaG000410 AT2G42300.1 63.158 95 35 0 252 346 176 270 1.30e-36 137
MsaG000410 AT5G62610.2 49.057 159 68 4 186 332 67 224 4.11e-35 131
MsaG000410 AT5G62610.1 49.057 159 68 4 186 332 67 224 4.11e-35 131
MsaG000410 AT1G18400.2 70.732 82 24 0 259 340 143 224 6.76e-33 124
MsaG000410 AT1G18400.1 70.732 82 24 0 259 340 143 224 9.94e-33 124
MsaG000410 AT1G73830.2 69.136 81 25 0 260 340 146 226 8.53e-32 122
MsaG000410 AT1G73830.1 69.136 81 25 0 260 340 146 226 8.82e-32 122
MsaG000410 AT1G25330.1 50.806 124 50 1 257 369 100 223 2.29e-31 120
MsaG000410 AT3G57800.1 31.373 306 124 6 126 346 32 336 2.05e-30 122
MsaG000410 AT2G24260.2 69.697 66 19 1 261 326 35 99 3.08e-22 95.5
MsaG000410 AT5G58010.1 62.963 81 25 2 260 336 98 177 3.89e-22 96.3
MsaG000410 AT4G30980.1 71.212 66 18 1 261 326 130 194 6.71e-22 95.9
MsaG000410 AT4G30980.2 71.212 66 18 1 261 326 178 242 1.13e-21 96.3
MsaG000410 AT2G24260.1 69.697 66 19 1 261 326 138 202 1.43e-21 95.9
MsaG000410 AT2G42300.5 68.000 50 16 0 252 301 176 225 4.07e-17 80.5
MsaG000410 AT2G42300.3 68.000 50 16 0 252 301 176 225 4.07e-17 80.5
MsaG000410 AT2G42300.2 69.388 49 15 0 252 300 176 224 4.54e-17 80.5
MsaG000410 AT4G09180.1 42.056 107 49 3 241 334 153 259 1.48e-15 76.6
MsaG000410 AT1G35460.1 53.731 67 31 0 259 325 179 245 1.90e-15 76.3
MsaG000410 AT2G20180.7 41.053 95 55 1 232 326 178 271 2.15e-15 78.2
MsaG000410 AT2G20180.1 41.053 95 55 1 232 326 178 271 2.15e-15 78.2
MsaG000410 AT2G20180.5 41.053 95 55 1 232 326 178 271 2.15e-15 78.2
MsaG000410 AT2G20180.4 41.053 95 55 1 232 326 249 342 2.98e-15 77.8
MsaG000410 AT2G20180.6 41.053 95 55 1 232 326 249 342 2.98e-15 77.8
MsaG000410 AT2G20180.2 41.053 95 55 1 232 326 249 342 2.98e-15 77.8
MsaG000410 AT2G20180.3 41.053 95 55 1 232 326 249 342 2.98e-15 77.8
MsaG000410 AT2G42280.1 54.688 64 29 0 261 324 279 342 3.61e-15 77.0
MsaG000410 AT1G09530.3 53.125 64 29 1 263 326 339 401 5.26e-15 77.4
MsaG000410 AT1G09530.2 53.125 64 29 1 263 326 339 401 5.26e-15 77.4
MsaG000410 AT1G09530.5 53.125 64 29 1 263 326 339 401 5.26e-15 77.4
MsaG000410 AT1G09530.1 53.125 64 29 1 263 326 339 401 5.26e-15 77.4
MsaG000410 AT1G09530.4 53.125 64 29 1 263 326 339 401 5.26e-15 77.4
MsaG000410 AT1G09530.6 53.125 64 29 1 263 326 339 401 5.26e-15 77.4
MsaG000410 AT2G42280.3 56.061 66 27 1 261 324 279 344 6.48e-15 76.3
MsaG000410 AT1G51140.1 56.250 64 28 0 261 324 304 367 7.84e-15 76.3
MsaG000410 AT4G28790.1 35.156 128 64 3 211 333 229 342 1.98e-14 75.1
MsaG000410 AT2G20180.8 40.217 92 54 1 232 323 249 339 5.58e-14 73.2
MsaG000410 AT4G02590.3 64.179 67 23 1 260 326 82 147 7.44e-14 71.6
MsaG000410 AT4G02590.2 64.179 67 23 1 260 326 145 210 1.02e-13 72.0
MsaG000410 AT4G02590.1 64.179 67 23 1 260 326 145 210 1.02e-13 72.0
MsaG000410 AT4G28815.2 55.172 58 25 1 264 321 71 127 1.15e-13 70.5
MsaG000410 AT4G28800.1 35.338 133 68 6 264 389 252 373 1.17e-13 72.8
MsaG000410 AT1G03040.2 65.152 66 22 1 261 326 139 203 1.43e-13 71.6
MsaG000410 AT1G03040.1 65.152 66 22 1 261 326 144 208 1.77e-13 71.2
MsaG000410 AT1G03040.3 64.179 67 23 1 260 326 143 208 2.85e-13 70.9
MsaG000410 AT4G28815.1 55.172 58 25 1 264 321 147 203 3.69e-13 70.5
MsaG000410 AT4G28790.2 35.897 117 56 3 211 322 229 331 5.34e-13 70.1
MsaG000410 AT4G28800.2 52.542 59 27 1 264 322 264 321 3.51e-12 68.6
MsaG000410 AT4G00050.2 49.231 65 32 1 261 325 105 168 7.69e-12 66.2
MsaG000410 AT2G46970.1 41.250 80 41 2 259 333 216 294 1.27e-11 66.6
MsaG000410 AT2G46970.2 41.250 80 41 2 259 333 185 263 1.42e-11 66.2
MsaG000410 AT4G00050.1 49.231 65 32 1 261 325 207 270 1.49e-11 66.2
MsaG000410 AT2G46970.3 41.250 80 41 2 259 333 194 272 1.50e-11 66.2
MsaG000410 AT4G00050.3 49.231 65 32 1 261 325 207 270 1.70e-11 65.9
MsaG000410 AT4G33880.1 49.231 65 32 1 261 325 266 329 1.79e-11 65.9
MsaG000410 AT2G43140.2 48.485 66 34 0 259 324 229 294 2.05e-11 65.1
MsaG000410 AT2G43140.1 48.485 66 34 0 259 324 132 197 3.99e-11 62.8

Find 111 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATACAACACTTGACAATT+TGG 0.149023 1:+5526219 MsaT000410.1:CDS
TTCCCTGATTGTTCAACTTT+TGG 0.193603 1:-5524757 None:intergenic
ATCTTATAACCCTCTTGTTT+TGG 0.236824 1:+5523928 MsaT000410.1:CDS
TTGAGTCAAGCTCATACTTT+TGG 0.246530 1:+5523860 MsaT000410.1:CDS
ATCCCATTCCATAAAAGTTT+TGG 0.257326 1:-5526189 None:intergenic
TATTAGTTCTGTGTCAAATA+TGG 0.262900 1:+5523748 MsaT000410.1:CDS
AAGATCTTCACTTACATCTT+TGG 0.264618 1:-5525627 None:intergenic
TTCTTCTCTTATTAGATAAC+TGG 0.273700 1:+5525208 MsaT000410.1:intron
TCAGAAATGGTTGGTTCCTT+TGG 0.277793 1:+5524046 MsaT000410.1:CDS
GCTTAGAAACAAACCTTGTT+TGG 0.285521 1:-5524289 None:intergenic
ATCCAAAGGGGTCAAATTAA+TGG 0.316200 1:+5524157 MsaT000410.1:CDS
TTGCTTCAAGAACTTGTTCC+AGG 0.318899 1:+5525025 MsaT000410.1:CDS
CTTGTTCAATACTCAAATCT+TGG 0.340230 1:+5523980 MsaT000410.1:CDS
GCAGCAGCAGCATCATTTCA+TGG 0.345728 1:+5523805 MsaT000410.1:CDS
CAAATTGTCAAGTGTTGTAT+TGG 0.347363 1:-5526218 None:intergenic
CACCATTAATTTGACCCCTT+TGG 0.347434 1:-5524159 None:intergenic
ATTCCCAAACGCAAGTTTCC+AGG 0.357553 1:+5526005 MsaT000410.1:CDS
CTCCAGTCACGCTTAGGACT+TGG 0.365208 1:+5525943 MsaT000410.1:CDS
AATACAACACTTGACAATTT+GGG 0.372449 1:+5526220 MsaT000410.1:CDS
TCCTTTGGCCAACATGGGTC+AGG 0.379373 1:+5524061 MsaT000410.1:CDS
AAACCAAAAGTTGAACAATC+AGG 0.388796 1:+5524754 MsaT000410.1:CDS
ATTTCATGGCTTCTTCAGCT+TGG 0.391101 1:+5523819 MsaT000410.1:CDS
CTACATCAAAGTTCAGTTCC+GGG 0.392601 1:-5525592 None:intergenic
TTCTTGTCCATCTTCAGAAA+TGG 0.392622 1:+5523724 MsaT000410.1:CDS
AAATTGTCAAGTGTTGTATT+GGG 0.393591 1:-5526217 None:intergenic
TCTACATCAAAGTTCAGTTC+CGG 0.395058 1:-5525593 None:intergenic
TTTCATGGCTTCTTCAGCTT+GGG 0.397346 1:+5523820 MsaT000410.1:CDS
TACCCTGGAAACTTGCGTTT+GGG 0.399150 1:-5526008 None:intergenic
GGAATCGGTGGATTTGTTCC+TGG 0.401252 1:+5525964 MsaT000410.1:CDS
AAGTGGAAGTTTCTCAGAAA+TGG 0.401403 1:+5524033 MsaT000410.1:CDS
TATGTACATGCAGAATGCTT+TGG 0.415983 1:+5526156 MsaT000410.1:intron
TTATAATGCTGTGATGGAAT+TGG 0.423796 1:-5524115 None:intergenic
TGCAAGACTGTGGCTGTTGG+TGG 0.430341 1:-5524857 None:intergenic
TTACCCTGGAAACTTGCGTT+TGG 0.431578 1:-5526009 None:intergenic
TTTGGCCAACATGGGTCAGG+TGG 0.434581 1:+5524064 MsaT000410.1:CDS
TTCCAAGTCCTAAGCGTGAC+TGG 0.444135 1:-5525945 None:intergenic
ATCGCTACCTTGTTGCATCC+TGG 0.450261 1:-5525043 None:intergenic
GTTGGTTCCTTTGGCCAACA+TGG 0.452089 1:+5524055 MsaT000410.1:CDS
CAGCCACAGTCTTGCAGAAA+GGG 0.452630 1:+5524864 MsaT000410.1:CDS
GAACCATCAGAAATCTTCCT+TGG 0.455036 1:-5524715 None:intergenic
GAACATGTAGCTAACACATC+AGG 0.456379 1:+5524088 MsaT000410.1:CDS
ACAGGATCTGCACCTGGTAG+TGG 0.456742 1:+5524223 MsaT000410.1:CDS
TTCTGCAAGACTGTGGCTGT+TGG 0.459429 1:-5524860 None:intergenic
ATTCATGAGGATGGAGGTAC+AGG 0.461324 1:+5524205 MsaT000410.1:CDS
CTAATATCCATTTCTGAAGA+TGG 0.462754 1:-5523731 None:intergenic
ATCCACAAGATTCCTTCCTA+TGG 0.466206 1:+5524010 MsaT000410.1:CDS
TGTGCAATCACTGCAGCAAC+AGG 0.471611 1:+5525264 MsaT000410.1:CDS
TATTCAACACACTATAACTC+TGG 0.473092 1:-5526630 None:intergenic
AAAGTTCAGTTCCGGGTTCA+CGG 0.473106 1:-5525585 None:intergenic
TAGATTCTCCAGTCACGCTT+AGG 0.473536 1:+5525937 MsaT000410.1:intron
TGGAAACTTGCGTTTGGGAA+TGG 0.479393 1:-5526003 None:intergenic
CGCTTAGGACTTGGAATCGG+TGG 0.488486 1:+5525952 MsaT000410.1:CDS
ACAGTTCCCTCCTTTGCCTC+AGG 0.492804 1:+5526059 MsaT000410.1:CDS
ATCACTGCAGCAACAGGTTG+AGG 0.493756 1:+5525270 MsaT000410.1:CDS
CGCAAGTTTCCAGGGTAACA+TGG 0.498356 1:+5526014 MsaT000410.1:CDS
TATAATCACATCAAGGATGC+TGG 0.503047 1:+5524133 MsaT000410.1:CDS
GAAACTTGCCACCGTGAACC+CGG 0.509079 1:+5525574 MsaT000410.1:CDS
CAAGGATGCTGGAATCCAAA+GGG 0.509335 1:+5524144 MsaT000410.1:CDS
GTTCAATACTCAAATCTTGG+AGG 0.510892 1:+5523983 MsaT000410.1:CDS
AAGATTCCTTCCTATGGAAG+TGG 0.511892 1:+5524016 MsaT000410.1:CDS
TGAGAAACTTCCACTTCCAT+AGG 0.519524 1:-5524026 None:intergenic
TTTCTTCTACTTCCACTACC+AGG 0.520640 1:-5524235 None:intergenic
AAAAGATTAGTGAACGAATG+AGG 0.527173 1:+5525002 MsaT000410.1:CDS
GGATGAGAGGAGCTTATACC+AGG 0.529199 1:-5525982 None:intergenic
ACAGCCACAGTCTTGCAGAA+AGG 0.531570 1:+5524863 MsaT000410.1:CDS
GGAAGTTTCTCAGAAATGGT+TGG 0.538496 1:+5524037 MsaT000410.1:CDS
TTGGTTCCTTTGGCCAACAT+GGG 0.538891 1:+5524056 MsaT000410.1:CDS
GATTAGAATGCTGAGGGTGA+TGG 0.542730 1:+5524679 MsaT000410.1:intron
AGTTTCCAGGGTAACATGGC+TGG 0.548496 1:+5526018 MsaT000410.1:CDS
TTCTACTTTCAGTCCAAACA+AGG 0.550639 1:+5524276 MsaT000410.1:CDS
TTGGCCAACATGGGTCAGGT+GGG 0.552278 1:+5524065 MsaT000410.1:CDS
AACCAAAAGTTGAACAATCA+GGG 0.556875 1:+5524755 MsaT000410.1:CDS
TCTCCAAGGAAGATTTCTGA+TGG 0.568713 1:+5524712 MsaT000410.1:CDS
ACCTGACCCATGTTGGCCAA+AGG 0.569057 1:-5524062 None:intergenic
TTCCCAAACGCAAGTTTCCA+GGG 0.570083 1:+5526006 MsaT000410.1:CDS
TGGTGAACAATCTCAGATTG+AGG 0.578059 1:+5524177 MsaT000410.1:CDS
GGGAACTGTGTTGATGAACT+AGG 0.579147 1:-5526045 None:intergenic
TCACGCTTAGGACTTGGAAT+CGG 0.580584 1:+5525949 MsaT000410.1:CDS
GCATGCCAGCCATGTTACCC+TGG 0.580745 1:-5526023 None:intergenic
AACTGAACTTTGATGTAGAA+CGG 0.586015 1:+5525597 MsaT000410.1:CDS
CTTGACAATTTGGGACCCAA+TGG 0.588420 1:+5526229 MsaT000410.1:CDS
TCAAGGATGCTGGAATCCAA+AGG 0.589904 1:+5524143 MsaT000410.1:CDS
ATGTGATTATAATGCTGTGA+TGG 0.590061 1:-5524121 None:intergenic
GAGGACTCTATTCATGAGGA+TGG 0.590188 1:+5524196 MsaT000410.1:CDS
CCTTGATTCTCCAAAACAAG+AGG 0.592951 1:-5523938 None:intergenic
AAACTTCCACTTCCATAGGA+AGG 0.598638 1:-5524022 None:intergenic
GCTTGACTCAATGAAACAAG+TGG 0.600555 1:-5523848 None:intergenic
TTCCATAGGAAGGAATCTTG+TGG 0.606199 1:-5524012 None:intergenic
GGGTGGTGAGGAAAATGCAA+TGG 0.606665 1:+5523670 MsaT000410.1:CDS
TCTTTAGAAGCATCTCCACT+CGG 0.607421 1:-5524799 None:intergenic
TGGCCAACATGGGTCAGGTG+GGG 0.608930 1:+5524066 MsaT000410.1:CDS
TGCGTTTGGGAATGGATGAG+AGG 0.610999 1:-5525995 None:intergenic
CTTGATTCTCCAAAACAAGA+GGG 0.612056 1:-5523937 None:intergenic
ACAGCATTATAATCACATCA+AGG 0.612365 1:+5524126 MsaT000410.1:CDS
GTTCCCCACCTGACCCATGT+TGG 0.625912 1:-5524069 None:intergenic
GAATTAAGAGATGGGTGGTG+AGG 0.626693 1:+5523658 None:intergenic
AACATGTAGCTAACACATCA+GGG 0.630115 1:+5524089 MsaT000410.1:CDS
GAACTTGGATTAGAATGCTG+AGG 0.632192 1:+5524672 MsaT000410.1:intron
GGAGGTACAGGATCTGCACC+TGG 0.632655 1:+5524217 MsaT000410.1:CDS
GTACCCTTTCTGCAAGACTG+TGG 0.636291 1:-5524867 None:intergenic
AACTTGGATTAGAATGCTGA+GGG 0.637008 1:+5524673 MsaT000410.1:intron
ATGGAGTGAAAGATTCTCCA+AGG 0.638409 1:+5524698 MsaT000410.1:CDS
GATTGAGGACTCTATTCATG+AGG 0.640742 1:+5524192 MsaT000410.1:CDS
AATGCAATGGAGTTTCAACA+TGG 0.644756 1:+5523683 MsaT000410.1:CDS
ATTCATGTGAGAGCTAGAAG+AGG 0.658128 1:+5524829 MsaT000410.1:CDS
GACTCTATTCATGAGGATGG+AGG 0.659616 1:+5524199 MsaT000410.1:CDS
TTCTTGAATTAAGAGATGGG+TGG 0.661303 1:+5523653 None:intergenic
ACTTGTTCCAGGATGCAACA+AGG 0.687844 1:+5525036 MsaT000410.1:CDS
AAGGATGCTGGAATCCAAAG+GGG 0.724973 1:+5524145 MsaT000410.1:CDS
GCTAAAGATAACTCTCCGAG+TGG 0.729396 1:+5524784 MsaT000410.1:CDS
GTTCAGTTCCGGGTTCACGG+TGG 0.752023 1:-5525582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 5523668 5526641 5523668 ID=MsaG000410
Chr1 mRNA 5523668 5526641 5523668 ID=MsaT000410.1;Parent=MsaG000410
Chr1 exon 5523668 5524297 5523668 ID=MsaT000410.1.exon1;Parent=MsaT000410.1
Chr1 CDS 5523668 5524297 5523668 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Chr1 exon 5524685 5524885 5524685 ID=MsaT000410.1.exon2;Parent=MsaT000410.1
Chr1 CDS 5524685 5524885 5524685 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Chr1 exon 5524992 5525057 5524992 ID=MsaT000410.1.exon3;Parent=MsaT000410.1
Chr1 CDS 5524992 5525057 5524992 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Chr1 exon 5525223 5525291 5525223 ID=MsaT000410.1.exon4;Parent=MsaT000410.1
Chr1 CDS 5525223 5525291 5525223 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Chr1 exon 5525563 5525634 5525563 ID=MsaT000410.1.exon5;Parent=MsaT000410.1
Chr1 CDS 5525563 5525634 5525563 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Chr1 exon 5525940 5526080 5525940 ID=MsaT000410.1.exon6;Parent=MsaT000410.1
Chr1 CDS 5525940 5526080 5525940 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Chr1 exon 5526169 5526250 5526169 ID=MsaT000410.1.exon7;Parent=MsaT000410.1
Chr1 CDS 5526169 5526250 5526169 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Chr1 exon 5526619 5526641 5526619 ID=MsaT000410.1.exon8;Parent=MsaT000410.1
Chr1 CDS 5526619 5526641 5526619 ID=cds.MsaT000410.1;Parent=MsaT000410.1
Gene Sequence

>MsaT000410.1

ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATTAGTTCTGTGTCAAATATGGTTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCATCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCATGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTACTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCAAGGAAGATTTCTGATGGTTCAAAAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAGCTAAAGATAACTCTCCGAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACCAACAGCCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCGGAACTGAACTTTGATGTAGAACGGCTCTTATCCAAAGATATTCTCCAGTCACGCTTAGGACTTGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCAAACGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGAATGGGATATGATCCCAATACAACACTTGACAATTTGGGACCCAATGGGAGGTTGAAACCAGAGTTATAG

Protein sequence

>MsaT000410.1

MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMVKTSSDVVNHHQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSRRKRGLDQNSTFSPNKNAEGDGVKDSPRKISDGSKEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDPNTTLDNLGPNGRLKPEL*