AlfalfaGEDB | MsaG000429

M. sativa ssp. caerulea / MsaG000429

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000429	XP_013465930.1	96.838	253	7	1	1	253	1	252	1.57e-180	506

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000429	sp\|Q9FKL2\|MYB36_ARATH	69.343	137	39	1	1	137	1	134	1.99e-66	212

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000429	tr\|A0A072VEE8\|A0A072VEE8_MEDTR	96.838	253	7	1	1	253	1	252	0.0	506

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000429	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000429	MtrunA17_Chr1g0151941	96.838	253	7	1	1	253	1	252	0.0	506
MsaG000429	MtrunA17_Chr3g0135311	61.728	162	62	0	1	162	1	162	5.71e-69	216
MsaG000429	MtrunA17_Chr1g0152011	76.471	119	28	0	1	119	1	119	1.04e-67	213
MsaG000429	MtrunA17_Chr5g0400821	53.365	208	83	3	1	200	1	202	1.27e-67	211
MsaG000429	MtrunA17_Chr7g0264641	67.347	147	41	2	1	140	1	147	3.07e-67	209
MsaG000429	MtrunA17_Chr4g0028311	76.471	119	28	0	1	119	1	119	8.76e-67	209
MsaG000429	MtrunA17_Chr4g0072751	80.180	111	22	0	1	111	1	111	1.53e-64	204
MsaG000429	MtrunA17_Chr2g0327351	75.676	111	27	0	1	111	1	111	6.18e-63	199
MsaG000429	MtrunA17_Chr4g0054391	77.273	110	25	0	1	110	1	110	2.23e-62	197
MsaG000429	MtrunA17_Chr6g0487491	71.094	128	29	1	1	120	1	128	1.31e-61	194

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000429	AT5G57620.1	69.343	137	39	1	1	137	1	134	2.03e-67	212
MsaG000429	AT2G36890.1	73.770	122	32	0	1	122	1	122	2.32e-66	208
MsaG000429	AT2G36890.2	73.770	122	32	0	1	122	42	163	3.22e-66	209
MsaG000429	AT3G49690.1	76.271	118	28	0	1	118	1	118	6.18e-66	207
MsaG000429	AT4G37780.1	73.950	119	31	0	1	119	1	119	1.02e-65	206
MsaG000429	AT5G65790.1	76.271	118	28	0	1	118	1	118	4.11e-65	207
MsaG000429	AT5G23000.1	73.729	118	31	0	1	118	1	118	7.96e-65	205
MsaG000429	AT5G16770.4	44.206	233	115	8	1	229	1	222	2.04e-56	183
MsaG000429	AT5G16770.3	44.206	233	115	8	1	229	1	222	2.04e-56	183
MsaG000429	AT5G56110.1	60.403	149	53	3	1	145	1	147	3.26e-56	182

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Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAAGAAGAAGATTT+TGG	0.243833	1:+5784083	MsaT000429.1:CDS
AAGAGTTATCTTGCAGCTCA+TGG	0.525951	1:+5782280	MsaT000429.1:CDS
AAGCCTCCATGTTTGATGTC+TGG	0.441386	1:-5783048	None:intergenic
AATTGGAAGTGGTGAAGGTG+GGG	0.536820	1:-5784232	None:intergenic
ACAACAAGGAGCTCTTCCCA+TGG	0.643741	1:-5782203	None:intergenic
ACATCATTGTCTGTTCTGCC+AGG	0.476737	1:-5784042	None:intergenic
ACTTTATTGTCTAGCATAAT+TGG	0.238985	1:-5784249	None:intergenic
ACTTTCTCTTTGTCACAACA+AGG	0.613328	1:-5782217	None:intergenic
AGAAAGTTAAGAGAGGACCA+TGG	0.681097	1:+5782233	MsaT000429.1:CDS
AGAATAGAGGGTGAAAATGA+TGG	0.524462	1:-5783088	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	5782205	5784512	5782205	ID=MsaG000429
Chr1	mRNA	5782205	5784512	5782205	ID=MsaT000429.1;Parent=MsaG000429
Chr1	exon	5782205	5782340	5782205	ID=MsaT000429.1.exon1;Parent=MsaT000429.1
Chr1	CDS	5782205	5782340	5782205	ID=cds.MsaT000429.1;Parent=MsaT000429.1
Chr1	exon	5782995	5783124	5782995	ID=MsaT000429.1.exon2;Parent=MsaT000429.1
Chr1	CDS	5782995	5783124	5782995	ID=cds.MsaT000429.1;Parent=MsaT000429.1
Chr1	exon	5784017	5784512	5784017	ID=MsaT000429.1.exon3;Parent=MsaT000429.1
Chr1	CDS	5784017	5784512	5784017	ID=cds.MsaT000429.1;Parent=MsaT000429.1

Gene Sequence

>MsaT000429.1

ATGGGAAGAGCTCCTTGTTGTGACAAAGAGAAAGTTAAGAGAGGACCATGGTCTCCGGATGAAGATGCAACACTCAAGAGTTATCTTGCAGCTCATGGCACTGTTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGACTTAAGAGGTGTGGGAAGAGTTGCCGTCTAAGGTGGCTGAATTATCTGAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAAGAGGATGCCATCATTTTCACCCTCTATTCTCAAATGGGTAGCAGATGGTCTGCCATAGCATCTAAACTACCTGGCAGAACAGACAATGATGTGAAAAACTATTGGAACACAAAACTGAAGAAGAAGATTTTGGCAGGAATAGTTAAGCTCAAACCATTGACTGAAAATGACAATACTATCCCTTCAACTCCATCACTAACTCAAAGTTCCAACCCTCAAAATTCAGAAATCAATTTCCCTGCTTCACAAAATCAACATTCCCCACCTTCACCACTTCCAATTATGCTAGACAATAAAGTTGACAAAATTCATGATGCTGTAGTATCAGAAATTGGTACAAGTAACAGCAATATTATTAATCCTTTGGTGTCAATTTCTCAAGACTCTTCAAGCATTGCAATTCAAGATCAAGCTGGTGACGAATCTATGGAATCATTGATGGATTTTGGCTTTGGATTTCCTCATGATGATCATGTCAATGATCTTAACTGCTTTCCTGAGTGGGTTGATTTTAGTTATGCTGACATTAAGCCAAATTGA

Protein sequence

>MsaT000429.1

MGRAPCCDKEKVKRGPWSPDEDATLKSYLAAHGTVGNWIALPKKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDAIIFTLYSQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKILAGIVKLKPLTENDNTIPSTPSLTQSSNPQNSEINFPASQNQHSPPSPLPIMLDNKVDKIHDAVVSEIGTSNSNIINPLVSISQDSSSIAIQDQAGDESMESLMDFGFGFPHDDHVNDLNCFPEWVDFSYADIKPN*