Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000452 | XP_003589026.1 | 97.175 | 531 | 8 | 1 | 1 | 531 | 1 | 524 | 0.0 | 1061 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000452 | sp|P48731|ATH1_ARATH | 58.228 | 316 | 110 | 6 | 191 | 505 | 152 | 446 | 3.04e-109 | 337 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000452 | tr|G7IB93|G7IB93_MEDTR | 97.175 | 531 | 8 | 1 | 1 | 531 | 1 | 524 | 0.0 | 1061 |
Gene ID | Type | Classification |
---|---|---|
MsaG000452 | TF | HB-BELL |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000309 | MsaG000452 | 0.813476 | 4.327086e-51 | 8.050481e-49 |
MsaG000452 | MsaG005405 | 0.809131 | 3.755315e-50 | 6.280093e-48 |
MsaG000452 | MsaG007480 | 0.805729 | 1.962411e-49 | 3.026079e-47 |
MsaG000452 | MsaG011348 | 0.811132 | 1.398185e-50 | 2.454533e-48 |
MsaG000452 | MsaG016994 | 0.809219 | 3.596229e-50 | 6.026448e-48 |
MsaG000452 | MsaG028633 | 0.822827 | 3.392329e-53 | 8.044232e-51 |
MsaG000452 | MsaG032101 | 0.807871 | 6.955759e-50 | 1.128487e-47 |
MsaG000452 | MsaG042535 | 0.803315 | 6.221699e-49 | 9.071170e-47 |
MsaG000452 | MsaG007923 | 0.801124 | 1.748388e-48 | 2.424650e-46 |
MsaG000452 | MsaG008766 | 0.812039 | 8.898916e-51 | 1.597391e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000452 | MtrunA17_Chr1g0151681 | 97.175 | 531 | 8 | 1 | 1 | 531 | 1 | 524 | 0.0 | 1061 |
MsaG000452 | MtrunA17_Chr4g0025521 | 35.739 | 291 | 157 | 7 | 250 | 523 | 217 | 494 | 7.06e-48 | 177 |
MsaG000452 | MtrunA17_Chr3g0141941 | 38.462 | 260 | 150 | 5 | 247 | 500 | 159 | 414 | 1.44e-44 | 164 |
MsaG000452 | MtrunA17_Chr1g0155681 | 37.548 | 261 | 144 | 5 | 252 | 500 | 172 | 425 | 7.96e-44 | 164 |
MsaG000452 | MtrunA17_Chr7g0267481 | 43.005 | 193 | 96 | 4 | 318 | 500 | 239 | 427 | 5.04e-43 | 162 |
MsaG000452 | MtrunA17_Chr8g0373801 | 38.739 | 222 | 120 | 5 | 306 | 517 | 447 | 662 | 1.00e-41 | 160 |
MsaG000452 | MtrunA17_Chr1g0177751 | 35.915 | 284 | 152 | 5 | 251 | 517 | 162 | 432 | 2.98e-41 | 157 |
MsaG000452 | MtrunA17_Chr3g0141931 | 36.842 | 266 | 146 | 7 | 247 | 500 | 162 | 417 | 6.92e-41 | 153 |
MsaG000452 | MtrunA17_Chr5g0403251 | 38.739 | 222 | 117 | 6 | 306 | 518 | 394 | 605 | 2.98e-40 | 155 |
MsaG000452 | MtrunA17_Chr8g0387321 | 41.899 | 179 | 95 | 4 | 325 | 494 | 254 | 432 | 5.76e-39 | 150 |
MsaG000452 | MtrunA17_Chr4g0008591 | 31.541 | 279 | 167 | 7 | 247 | 522 | 193 | 450 | 4.47e-37 | 144 |
MsaG000452 | MtrunA17_Chr7g0240371 | 37.624 | 202 | 117 | 5 | 329 | 525 | 200 | 397 | 1.75e-36 | 142 |
MsaG000452 | MtrunA17_Chr4g0028701 | 29.755 | 326 | 185 | 8 | 247 | 528 | 242 | 567 | 3.46e-35 | 140 |
MsaG000452 | MtrunA17_Chr2g0327021 | 36.923 | 195 | 105 | 3 | 322 | 498 | 312 | 506 | 1.02e-33 | 135 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000452 | AT4G32980.1 | 58.228 | 316 | 110 | 6 | 191 | 505 | 152 | 446 | 3.09e-110 | 337 |
MsaG000452 | AT4G32980.2 | 58.228 | 316 | 110 | 6 | 191 | 505 | 152 | 446 | 3.09e-110 | 337 |
MsaG000452 | AT2G16400.1 | 36.918 | 279 | 149 | 7 | 247 | 517 | 111 | 370 | 2.24e-43 | 161 |
MsaG000452 | AT2G27220.1 | 41.622 | 185 | 82 | 5 | 324 | 500 | 131 | 297 | 5.18e-42 | 156 |
MsaG000452 | AT2G27220.3 | 41.622 | 185 | 82 | 5 | 324 | 500 | 131 | 297 | 5.18e-42 | 156 |
MsaG000452 | AT1G19700.1 | 34.799 | 273 | 145 | 7 | 247 | 500 | 162 | 420 | 7.01e-42 | 158 |
MsaG000452 | AT1G19700.3 | 34.799 | 273 | 145 | 7 | 247 | 500 | 162 | 420 | 7.01e-42 | 158 |
MsaG000452 | AT1G19700.5 | 34.799 | 273 | 145 | 7 | 247 | 500 | 162 | 420 | 7.01e-42 | 158 |
MsaG000452 | AT1G19700.4 | 34.799 | 273 | 145 | 7 | 247 | 500 | 162 | 420 | 7.01e-42 | 158 |
MsaG000452 | AT1G19700.2 | 34.799 | 273 | 145 | 7 | 247 | 500 | 162 | 420 | 7.01e-42 | 158 |
MsaG000452 | AT4G34610.2 | 32.873 | 362 | 199 | 12 | 149 | 500 | 56 | 383 | 1.21e-41 | 157 |
MsaG000452 | AT4G34610.4 | 32.873 | 362 | 199 | 12 | 149 | 500 | 56 | 383 | 1.21e-41 | 157 |
MsaG000452 | AT4G34610.3 | 32.873 | 362 | 199 | 12 | 149 | 500 | 56 | 383 | 1.21e-41 | 157 |
MsaG000452 | AT4G34610.1 | 32.873 | 362 | 199 | 12 | 149 | 500 | 56 | 383 | 1.21e-41 | 157 |
MsaG000452 | AT1G75410.1 | 35.632 | 261 | 152 | 6 | 247 | 500 | 164 | 415 | 2.47e-41 | 156 |
MsaG000452 | AT1G75410.2 | 35.632 | 261 | 152 | 6 | 247 | 500 | 164 | 415 | 2.47e-41 | 156 |
MsaG000452 | AT2G27220.2 | 42.941 | 170 | 71 | 5 | 339 | 500 | 164 | 315 | 1.77e-38 | 147 |
MsaG000452 | AT1G75430.1 | 40.314 | 191 | 99 | 3 | 323 | 500 | 83 | 271 | 4.94e-38 | 141 |
MsaG000452 | AT4G36870.2 | 36.538 | 208 | 114 | 4 | 305 | 500 | 366 | 567 | 2.56e-37 | 147 |
MsaG000452 | AT4G36870.1 | 36.538 | 208 | 114 | 4 | 305 | 500 | 366 | 567 | 2.56e-37 | 147 |
MsaG000452 | AT2G23760.2 | 37.255 | 204 | 110 | 4 | 307 | 498 | 294 | 491 | 4.80e-36 | 142 |
MsaG000452 | AT2G23760.1 | 37.255 | 204 | 110 | 4 | 307 | 498 | 294 | 491 | 4.80e-36 | 142 |
MsaG000452 | AT2G23760.3 | 37.255 | 204 | 110 | 4 | 307 | 498 | 294 | 491 | 4.80e-36 | 142 |
MsaG000452 | AT5G41410.1 | 39.899 | 198 | 105 | 5 | 319 | 503 | 267 | 463 | 2.36e-35 | 140 |
MsaG000452 | AT2G27990.1 | 40.462 | 173 | 99 | 3 | 328 | 499 | 323 | 492 | 1.68e-34 | 137 |
MsaG000452 | AT2G35940.3 | 29.064 | 406 | 239 | 10 | 126 | 492 | 51 | 446 | 6.63e-34 | 136 |
MsaG000452 | AT2G35940.1 | 29.064 | 406 | 239 | 10 | 126 | 492 | 51 | 446 | 6.63e-34 | 136 |
MsaG000452 | AT2G35940.2 | 29.064 | 406 | 239 | 10 | 126 | 492 | 51 | 446 | 6.63e-34 | 136 |
MsaG000452 | AT5G02030.1 | 36.813 | 182 | 100 | 3 | 332 | 498 | 234 | 415 | 1.14e-29 | 123 |
MsaG000452 | AT2G23760.4 | 29.688 | 256 | 110 | 5 | 307 | 498 | 294 | 543 | 1.11e-27 | 117 |
MsaG000452 | AT1G75410.3 | 30.962 | 239 | 149 | 6 | 247 | 478 | 164 | 393 | 9.53e-26 | 109 |
MsaG000452 | AT4G36870.4 | 31.551 | 187 | 110 | 4 | 305 | 479 | 366 | 546 | 9.97e-23 | 102 |
MsaG000452 | AT4G36870.3 | 30.811 | 185 | 110 | 4 | 305 | 477 | 366 | 544 | 1.08e-21 | 99.0 |
MsaG000452 | AT1G75430.2 | 31.081 | 148 | 87 | 3 | 323 | 457 | 83 | 228 | 1.52e-13 | 71.6 |
MsaG000452 | AT2G27990.2 | 32.824 | 131 | 84 | 3 | 328 | 457 | 323 | 450 | 1.08e-12 | 70.5 |
Find 90 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATACATATTCAATAAT+TGG | 0.188620 | 1:-6009515 | MsaT000452.1:CDS |
AATGGAATTCCAATACTTTC+TGG | 0.223215 | 1:-6009720 | MsaT000452.1:CDS |
ATCTTTCTGGCAAGCCCCTT+TGG | 0.227378 | 1:+6007927 | None:intergenic |
AACCAAAACAACATCATAAA+TGG | 0.230798 | 1:-6009738 | MsaT000452.1:CDS |
ATGGAACTTTCTATGAGTTT+AGG | 0.232674 | 1:-6009162 | MsaT000452.1:CDS |
TCTTTCTGGCAAGCCCCTTT+GGG | 0.243439 | 1:+6007928 | None:intergenic |
AAATGCTTCTCTGCATCTTT+AGG | 0.274049 | 1:+6007620 | None:intergenic |
TCTTGATGAGATAAACTATT+CGG | 0.288114 | 1:-6009037 | MsaT000452.1:CDS |
TTCCATTTATGATGTTGTTT+TGG | 0.288436 | 1:+6009736 | None:intergenic |
TGGAACTTTCTATGAGTTTA+GGG | 0.292728 | 1:-6009161 | MsaT000452.1:CDS |
AACGGTTTCTCGACTATATA+AGG | 0.297571 | 1:-6008107 | MsaT000452.1:CDS |
CTGTTTCCGTTCTACGTGAT+TGG | 0.305984 | 1:-6007904 | MsaT000452.1:CDS |
AACCCCTTGTGTGCAACTTT+TGG | 0.320504 | 1:-6009474 | MsaT000452.1:CDS |
TATTCGGGTTCTGGTGTTAG+AGG | 0.338538 | 1:-6009021 | MsaT000452.1:CDS |
GAGATAAACTATTCGGGTTC+TGG | 0.339602 | 1:-6009030 | MsaT000452.1:CDS |
ACAAGCCTCATGTAGTAGTA+TGG | 0.375487 | 1:-6009181 | MsaT000452.1:CDS |
GAATGGAACAAGATCGGGTT+TGG | 0.377735 | 1:-6009205 | MsaT000452.1:CDS |
TTTGATGATTGCCATCCATT+TGG | 0.383458 | 1:+6009357 | None:intergenic |
AAGATACCTTGCTGTAATTC+AGG | 0.388861 | 1:-6009097 | MsaT000452.1:CDS |
GGTTTATAAATGCGCGTGTT+CGG | 0.404462 | 1:-6007231 | MsaT000452.1:CDS |
AAGTTCATTGCTACAATTTG+AGG | 0.409458 | 1:+6009302 | None:intergenic |
CTTGATGAGATAAACTATTC+GGG | 0.413238 | 1:-6009036 | MsaT000452.1:CDS |
AGAACGGAAACAGATCTTTC+TGG | 0.415143 | 1:+6007914 | None:intergenic |
TAAATGCGCGTGTTCGGCTA+TGG | 0.423300 | 1:-6007225 | MsaT000452.1:CDS |
TTCATTCATTCAAAAGCAAT+GGG | 0.425095 | 1:-6007990 | MsaT000452.1:CDS |
TATCTTGATCCTAATATTGC+CGG | 0.425897 | 1:+6009114 | None:intergenic |
TGCCAATTATTGAATATGTA+TGG | 0.427184 | 1:+6009513 | None:intergenic |
GCATACATTTCCTCAATCAA+TGG | 0.431572 | 1:+6007199 | None:intergenic |
AAATGTTTAATATGAATTGA+AGG | 0.435021 | 1:-6007096 | None:intergenic |
CTTGCAACATCACCAACTTC+AGG | 0.442716 | 1:-6009270 | MsaT000452.1:CDS |
TAGCAAACATATTCTTTCCA+TGG | 0.443732 | 1:-6008068 | MsaT000452.1:CDS |
GGGCTCTTCAACAGTTGAAA+AGG | 0.453231 | 1:-6007970 | MsaT000452.1:CDS |
CAGTCAATATAGTCAATGTT+TGG | 0.454449 | 1:-6008209 | MsaT000452.1:CDS |
TTATTAACAATGAGATTTGA+GGG | 0.454533 | 1:+6009594 | None:intergenic |
TGCACACTTTGCTGTCAAAA+CGG | 0.454758 | 1:-6008125 | MsaT000452.1:CDS |
TGAAAAGGAAAGATCAGTTA+TGG | 0.458634 | 1:-6007955 | MsaT000452.1:CDS |
GTTATTAACAATGAGATTTG+AGG | 0.462088 | 1:+6009593 | None:intergenic |
CTTCATTCATTCAAAAGCAA+TGG | 0.463764 | 1:-6007991 | MsaT000452.1:CDS |
TGTTCTCCACCAGAAAGTAT+TGG | 0.466176 | 1:+6009711 | None:intergenic |
GCAAAGTGTGCATGTATTTG+TGG | 0.466187 | 1:+6008136 | None:intergenic |
AGCATGAATGGAACAAGATC+GGG | 0.483225 | 1:-6009210 | MsaT000452.1:CDS |
AAAGCTCAAGAGAGTAATGT+TGG | 0.486264 | 1:-6009420 | MsaT000452.1:CDS |
ATTTATTCCTATCCTTCGCT+TGG | 0.489525 | 1:+6008966 | None:intergenic |
TTCATGGTCAGAAGAGGATA+AGG | 0.491594 | 1:-6008029 | MsaT000452.1:CDS |
AGCAAACATATTCTTTCCAT+GGG | 0.494717 | 1:-6008067 | MsaT000452.1:CDS |
ACTGTTAAAATTTGATCCCA+TGG | 0.497477 | 1:+6008051 | None:intergenic |
GACTTAACTCATAGCATGAA+TGG | 0.499550 | 1:-6009222 | MsaT000452.1:CDS |
ATGAGAGCAGTGAAAGAAGC+AGG | 0.499804 | 1:-6007135 | MsaT000452.1:CDS |
GGTTCTGGTGTTAGAGGCCG+AGG | 0.503924 | 1:-6009015 | MsaT000452.1:CDS |
TGGTTGTGTAGGTATCAAAC+TGG | 0.504145 | 1:-6007252 | MsaT000452.1:intron |
AAGTGGGTTGACTAGAAGTC+AGG | 0.504398 | 1:-6007585 | MsaT000452.1:intron |
AACAAATGAATTATCAGCTA+TGG | 0.505083 | 1:+6009650 | None:intergenic |
TCTTGAAGACCAATTCTAGC+AGG | 0.505334 | 1:+6009555 | None:intergenic |
AGAAAAGCTTGTCGAAATGA+AGG | 0.508701 | 1:-6007163 | MsaT000452.1:CDS |
ATCAGTTATGGAGGCCCCAA+AGG | 0.509828 | 1:-6007943 | MsaT000452.1:CDS |
CTTTCTGGCAAGCCCCTTTG+GGG | 0.514861 | 1:+6007929 | None:intergenic |
TCAGTTATGGAGGCCCCAAA+GGG | 0.515348 | 1:-6007942 | MsaT000452.1:CDS |
TCAGCATAAGCTTCTGACAT+AGG | 0.527852 | 1:+6008931 | None:intergenic |
TCATGTCATATTCGCCGATA+GGG | 0.529853 | 1:-6009389 | MsaT000452.1:CDS |
ATAGGGAACATCGATCCAAA+TGG | 0.530007 | 1:-6009372 | MsaT000452.1:CDS |
TAGCATGAATGGAACAAGAT+CGG | 0.530199 | 1:-6009211 | MsaT000452.1:CDS |
ACAAAGTTGATTTATTTCCT+CGG | 0.530630 | 1:+6008998 | None:intergenic |
GGTCAATGCTCAGAGATTAG+TGG | 0.536668 | 1:-6009249 | MsaT000452.1:CDS |
ATGCTGATTCTTCATTGCAA+AGG | 0.542693 | 1:-6008915 | MsaT000452.1:CDS |
GCTATGGAAACCATTGATTG+AGG | 0.555071 | 1:-6007209 | MsaT000452.1:CDS |
ATCACCAAAAGTTGCACACA+AGG | 0.561105 | 1:+6009470 | None:intergenic |
TCTGAGCATTGACCTGAAGT+TGG | 0.571861 | 1:+6009258 | None:intergenic |
CACCAAAAGTTGCACACAAG+GGG | 0.572833 | 1:+6009472 | None:intergenic |
TAACAGTTCATGGTCAGAAG+AGG | 0.576067 | 1:-6008035 | MsaT000452.1:CDS |
GGAATTCCAATACTTTCTGG+TGG | 0.576914 | 1:-6009717 | MsaT000452.1:CDS |
ACTCTTGATGCTTCTACAGA+TGG | 0.577737 | 1:-6008866 | MsaT000452.1:intron |
ACTGCTCAAATGAACATGGC+TGG | 0.584941 | 1:-6009840 | MsaT000452.1:CDS |
AACACAACCAAGCGAAGGAT+AGG | 0.588145 | 1:-6008973 | MsaT000452.1:CDS |
TTGTTACATCACAACATGGA+AGG | 0.589701 | 1:-6009632 | MsaT000452.1:CDS |
AATGAATAGCAATGAATGAG+TGG | 0.594918 | 1:+6009771 | None:intergenic |
AAACATCCAATCACGTAGAA+CGG | 0.600137 | 1:+6007898 | None:intergenic |
TTCATGTCATATTCGCCGAT+AGG | 0.602007 | 1:-6009390 | MsaT000452.1:CDS |
ACAACATGGAAGGACTATTG+TGG | 0.614360 | 1:-6009622 | MsaT000452.1:CDS |
TTTGGATCGATGTTCCCTAT+CGG | 0.616890 | 1:+6009375 | None:intergenic |
TAGATAATACTTACGGATGG+AGG | 0.617974 | 1:+6007867 | None:intergenic |
TATATAAGGACTTGAGAGAG+AGG | 0.620065 | 1:-6008093 | MsaT000452.1:CDS |
AAGTTCCATACTACTACATG+AGG | 0.620943 | 1:+6009176 | None:intergenic |
GGAACATCGATCCAAATGGA+TGG | 0.633164 | 1:-6009368 | MsaT000452.1:CDS |
TCACCAAAAGTTGCACACAA+GGG | 0.650888 | 1:+6009471 | None:intergenic |
TCATTTGTTACATCACAACA+TGG | 0.664816 | 1:-6009636 | MsaT000452.1:CDS |
AAAGGAAAGATCAGTTATGG+AGG | 0.667219 | 1:-6007952 | MsaT000452.1:CDS |
TGTCGAACACAACCAAGCGA+AGG | 0.672572 | 1:-6008978 | MsaT000452.1:CDS |
GTACACTGCTCAAATGAACA+TGG | 0.673477 | 1:-6009844 | MsaT000452.1:CDS |
GTATTTCCTGAATTACAGCA+AGG | 0.683112 | 1:+6009091 | None:intergenic |
CAGTTATGGAGGCCCCAAAG+GGG | 0.731077 | 1:-6007941 | MsaT000452.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 6007099 | 6009880 | 6007099 | ID=MsaG000452 |
Chr1 | mRNA | 6007099 | 6009880 | 6007099 | ID=MsaT000452.1;Parent=MsaG000452 |
Chr1 | exon | 6007099 | 6007263 | 6007099 | ID=MsaT000452.1.exon4;Parent=MsaT000452.1 |
Chr1 | CDS | 6007099 | 6007263 | 6007099 | ID=cds.MsaT000452.1;Parent=MsaT000452.1 |
Chr1 | exon | 6007586 | 6007646 | 6007586 | ID=MsaT000452.1.exon3;Parent=MsaT000452.1 |
Chr1 | CDS | 6007586 | 6007646 | 6007586 | ID=cds.MsaT000452.1;Parent=MsaT000452.1 |
Chr1 | exon | 6007881 | 6008236 | 6007881 | ID=MsaT000452.1.exon2;Parent=MsaT000452.1 |
Chr1 | CDS | 6007881 | 6008236 | 6007881 | ID=cds.MsaT000452.1;Parent=MsaT000452.1 |
Chr1 | exon | 6008867 | 6009880 | 6008867 | ID=MsaT000452.1.exon1;Parent=MsaT000452.1 |
Chr1 | CDS | 6008867 | 6009880 | 6008867 | ID=cds.MsaT000452.1;Parent=MsaT000452.1 |
Gene Sequence |
Protein sequence |