Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000472 | AES59248.1 | 50.000 | 120 | 35 | 6 | 9 | 120 | 2 | 104 | 1.71e-16 | 80.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000472 | tr|G7I9Y7|G7I9Y7_MEDTR | 50.000 | 120 | 35 | 6 | 9 | 120 | 2 | 104 | 8.19e-17 | 80.5 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000023 | MsaG000472 | 0.833585 | 8.894422e-56 | 2.856469e-53 |
MsaG000219 | MsaG000472 | 0.822469 | 4.105026e-53 | 9.640561e-51 |
MsaG000413 | MsaG000472 | 0.835781 | 2.508960e-56 | 8.602761e-54 |
MsaG000472 | MsaG000545 | 0.805202 | 2.528985e-49 | 3.852095e-47 |
MsaG000472 | MsaG000621 | 0.805563 | 2.125821e-49 | 3.265222e-47 |
MsaG000472 | MsaG000753 | 0.875822 | 4.726566e-68 | 7.051186e-65 |
MsaG000472 | MsaG000801 | 0.834301 | 5.898858e-56 | 1.935045e-53 |
MsaG000472 | MsaG000944 | 0.808192 | 5.947409e-50 | 9.723407e-48 |
MsaG000472 | MsaG001045 | 0.836096 | 2.089057e-56 | 7.231221e-54 |
MsaG000472 | MsaG001048 | 0.818860 | 2.745155e-52 | 5.859034e-50 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000472 | MtrunA17_Chr1g0151471 | 50.000 | 120 | 35 | 6 | 9 | 120 | 2 | 104 | 1.58e-20 | 80.5 |
MsaG000472 | MtrunA17_Chr1g0151461 | 39.806 | 103 | 45 | 3 | 27 | 120 | 140 | 234 | 3.93e-12 | 62.0 |
Find 24 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTCTCTTGACACTGAAAA+AGG | 0.334844 | 1:+6239584 | MsaT000472.1:CDS |
AATGGCGAATACTATATCCA+AGG | 0.653439 | 1:+6239224 | MsaT000472.1:CDS |
ACCGAATACGAATACCCAAA+AGG | 0.493067 | 1:+6239199 | MsaT000472.1:CDS |
ACGAATACCCAAAAGGGCAA+TGG | 0.610371 | 1:+6239206 | MsaT000472.1:CDS |
ACTCCGACGAAGAAGGGAAG+AGG | 0.589069 | 1:+6239550 | MsaT000472.1:CDS |
AGTATTCGCCATTGCCCTTT+TGG | 0.253039 | 1:-6239214 | None:intergenic |
ATACGAACACTACTCCTCTT+TGG | 0.387924 | 1:+6239302 | MsaT000472.1:CDS |
ATAGTTAACAAGAAATATGT+TGG | 0.559012 | 1:+6239502 | MsaT000472.1:intron |
ATCGCAATCGAAACAAACCC+TGG | 0.664892 | 1:-6239281 | None:intergenic |
ATGTGGACTCCGACGAAGAA+GGG | 0.540307 | 1:+6239544 | MsaT000472.1:CDS |
CRISPR-GE
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 6239082 | 6239655 | 6239082 | ID=MsaG000472 |
Chr1 | mRNA | 6239082 | 6239655 | 6239082 | ID=MsaT000472.1;Parent=MsaG000472 |
Chr1 | exon | 6239082 | 6239348 | 6239082 | ID=MsaT000472.1.exon1;Parent=MsaT000472.1 |
Chr1 | CDS | 6239082 | 6239348 | 6239082 | ID=cds.MsaT000472.1;Parent=MsaT000472.1 |
Chr1 | exon | 6239506 | 6239655 | 6239506 | ID=MsaT000472.1.exon2;Parent=MsaT000472.1 |
Chr1 | CDS | 6239506 | 6239655 | 6239506 | ID=cds.MsaT000472.1;Parent=MsaT000472.1 |
Gene Sequence |
>MsaT000472.1 ATGAGAGTAAGTAACGATGATCCAGTTCCAGCGACAAAGAAGAAAAAAACTGCTGCTAGTGCTGCCAAAAAGAAGAAATCAGTTGCTAGTGCTTCCAAAAAGAAAATAAAAACTGCTACCGAATACGAATACCCAAAAGGGCAATGGCGAATACTATATCCAAGGAATTGGTTCAGCCCTCCTCCTAGTAAAAACACAACCAGGGTTTGTTTCGATTGCGATACGAACACTACTCCTCTTTGGAGGAGTGATCCTACGGGTTCCAAGTTAACAAGAAATATGTTGGTGCAGTCGTTGTGCAATGCATGTGGACTCCGACGAAGAAGGGAAGAGGCAAAAGCCAATAAGTCTCTTGACACTGAAAAAGGAAAGGGAAACGACGAAAGCTCATCATCTGAGAATGTGAAGAAGTTTTAA |
Protein sequence |
>MsaT000472.1 MRVSNDDPVPATKKKKTAASAAKKKKSVASASKKKIKTATEYEYPKGQWRILYPRNWFSPPPSKNTTRVCFDCDTNTTPLWRSDPTGSKLTRNMLVQSLCNACGLRRRREEAKANKSLDTEKGKGNDESSSSENVKKF* |