AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG000493


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000493 MtrunA17_Chr1g0151351 98.009 452 9 0 1 452 1 452 0.0 930
MsaG000493 MtrunA17_Chr2g0330171 48.577 492 176 16 11 452 1 465 9.31e-133 391
MsaG000493 MtrunA17_Chr8g0342421 47.129 505 187 14 1 433 1 497 2.71e-129 384
MsaG000493 MtrunA17_Chr1g0185121 54.790 334 112 7 11 305 6 339 9.04e-118 352
MsaG000493 MtrunA17_Chr8g0373541 76.804 194 43 2 10 203 3 194 6.81e-109 332
MsaG000493 MtrunA17_Chr4g0040571 78.689 183 38 1 32 214 30 211 3.46e-107 327
MsaG000493 MtrunA17_Chr7g0263941 57.843 306 107 8 16 303 9 310 1.54e-106 322
MsaG000493 MtrunA17_Chr4g0029521 73.196 194 51 1 16 208 12 205 1.64e-104 319
MsaG000493 MtrunA17_Chr1g0191991 81.548 168 30 1 35 202 57 223 1.89e-103 318
MsaG000493 MtrunA17_Chr1g0199101 76.216 185 41 3 38 222 45 226 4.63e-102 315
MsaG000493 MtrunA17_Chr1g0181381 52.121 330 94 9 41 308 38 365 9.39e-102 312
MsaG000493 MtrunA17_Chr2g0326381 44.529 393 163 10 40 420 31 380 4.57e-101 308
MsaG000493 MtrunA17_Chr1g0162971 79.755 163 32 1 41 203 41 202 2.97e-100 307
MsaG000493 MtrunA17_Chr1g0163001 70.588 204 53 4 9 211 16 213 3.72e-99 306
MsaG000493 MtrunA17_Chr1g0210821 81.013 158 29 1 44 201 47 203 1.15e-97 304
MsaG000493 MtrunA17_Chr7g0268961 52.885 312 97 9 51 318 32 337 1.34e-96 299
MsaG000493 MtrunA17_Chr3g0141431 50.671 298 103 5 38 292 19 315 2.38e-93 288
MsaG000493 MtrunA17_Chr2g0324991 83.333 132 21 1 52 183 3 133 1.90e-79 243
MsaG000493 MtrunA17_Chr6g0479921 44.595 296 132 10 25 295 18 306 2.67e-73 238
MsaG000493 MtrunA17_Chr8g0375521 55.676 185 75 2 14 197 6 184 6.33e-72 233
MsaG000493 MtrunA17_Chr2g0320341 30.303 198 124 4 7 191 182 378 1.03e-22 99.8
MsaG000493 MtrunA17_Chr1g0200421 35.099 151 87 3 55 194 236 386 1.29e-22 100
MsaG000493 MtrunA17_Chr3g0123941 35.762 151 90 3 51 194 118 268 2.06e-22 97.8
MsaG000493 MtrunA17_Chr5g0422571 33.498 203 115 9 5 196 55 248 2.34e-22 97.1
MsaG000493 MtrunA17_Chr8g0352011 36.620 142 79 5 62 194 171 310 1.83e-20 92.0
MsaG000493 MtrunA17_Chr7g0258011 33.951 162 88 6 62 206 181 340 5.18e-20 90.9
MsaG000493 MtrunA17_Chr1g0173841 35.915 142 80 5 62 194 220 359 1.71e-19 90.1
MsaG000493 MtrunA17_Chr1g0198651 34.161 161 91 6 47 194 91 249 2.13e-19 88.2
MsaG000493 MtrunA17_Chr4g0053341 33.333 159 94 6 45 194 63 218 2.92e-19 86.7
MsaG000493 MtrunA17_Chr2g0328921 35.211 142 81 5 62 194 143 282 7.83e-19 87.0
MsaG000493 MtrunA17_Chr4g0026521 35.211 142 81 5 62 194 123 262 8.14e-19 86.7
MsaG000493 MtrunA17_Chr8g0382121 35.135 148 86 5 54 191 109 256 1.09e-18 86.7
MsaG000493 MtrunA17_Chr2g0321291 35.461 141 82 4 62 194 138 277 2.01e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000493 AT1G55110.3 59.752 323 93 7 7 294 17 337 1.51e-120 359
MsaG000493 AT1G55110.1 59.752 323 93 7 7 294 17 337 1.51e-120 359
MsaG000493 AT1G55110.2 59.752 323 93 7 7 294 17 337 1.51e-120 359
MsaG000493 AT5G66730.1 75.000 196 41 3 10 203 4 193 4.45e-106 324
MsaG000493 AT3G50700.1 72.864 199 50 2 5 203 1 195 2.25e-105 320
MsaG000493 AT3G13810.5 69.444 216 46 2 8 203 12 227 1.77e-104 320
MsaG000493 AT3G13810.4 69.444 216 46 2 8 203 17 232 2.25e-104 320
MsaG000493 AT3G13810.1 69.444 216 46 2 8 203 17 232 2.25e-104 320
MsaG000493 AT1G03840.1 78.409 176 37 1 38 213 38 212 3.45e-103 317
MsaG000493 AT2G02080.1 42.991 428 141 10 38 371 51 469 4.08e-103 317
MsaG000493 AT2G02080.4 42.991 428 141 10 38 371 51 469 4.08e-103 317
MsaG000493 AT2G02080.5 42.991 428 141 10 38 371 51 469 4.08e-103 317
MsaG000493 AT2G02080.3 42.991 428 141 10 38 371 51 469 4.08e-103 317
MsaG000493 AT3G45260.2 78.947 171 36 0 40 210 38 208 6.66e-103 314
MsaG000493 AT3G45260.1 78.947 171 36 0 40 210 38 208 6.66e-103 314
MsaG000493 AT5G03150.1 77.528 178 37 1 40 214 52 229 2.69e-102 314
MsaG000493 AT3G13810.6 69.014 213 46 2 11 203 1 213 4.00e-102 313
MsaG000493 AT4G02670.2 47.872 376 148 11 41 399 55 399 4.34e-102 310
MsaG000493 AT4G02670.1 47.872 376 148 11 41 399 53 397 5.57e-102 310
MsaG000493 AT1G14580.1 74.566 173 43 1 31 203 43 214 6.91e-101 310
MsaG000493 AT1G14580.2 74.566 173 43 1 31 203 43 214 6.91e-101 310
MsaG000493 AT5G44160.1 74.468 188 47 1 24 211 20 206 1.04e-100 309
MsaG000493 AT1G14580.3 75.439 171 41 1 33 203 59 228 1.43e-100 309
MsaG000493 AT1G03840.2 77.273 176 37 2 38 213 38 210 2.05e-99 307
MsaG000493 AT2G02070.2 80.368 163 31 1 41 203 52 213 1.88e-98 307
MsaG000493 AT2G02070.1 80.368 163 31 1 41 203 52 213 1.88e-98 307
MsaG000493 AT5G60470.2 73.837 172 44 1 41 211 44 215 1.73e-96 298
MsaG000493 AT5G60470.3 73.837 172 44 1 41 211 40 211 2.03e-96 298
MsaG000493 AT3G13810.2 64.414 222 53 2 8 203 12 233 7.69e-95 295
MsaG000493 AT3G13810.3 83.553 152 25 0 52 203 68 219 3.33e-94 293
MsaG000493 AT5G44160.2 78.528 163 34 1 49 211 6 167 1.42e-93 289
MsaG000493 AT2G02080.6 41.895 401 130 10 65 371 1 392 1.05e-89 280
MsaG000493 AT2G02080.2 41.895 401 130 10 65 371 1 392 1.05e-89 280
MsaG000493 AT5G60470.1 73.292 161 42 1 52 211 46 206 8.47e-89 278
MsaG000493 AT1G68130.1 63.529 170 56 2 29 197 34 198 7.83e-75 241
MsaG000493 AT2G01940.1 62.722 169 61 2 28 195 32 199 3.02e-73 237
MsaG000493 AT1G25250.3 57.895 190 71 4 10 197 9 191 5.08e-72 232
MsaG000493 AT2G01940.3 61.765 170 62 3 28 195 32 200 1.09e-69 228
MsaG000493 AT1G25250.1 63.758 149 52 2 51 197 20 168 4.94e-68 221
MsaG000493 AT1G68130.2 64.286 112 39 1 87 197 1 112 1.52e-47 167
MsaG000493 AT1G25250.2 61.947 113 41 2 87 197 1 113 4.46e-45 159
MsaG000493 AT2G01940.2 62.727 110 40 1 87 195 1 110 1.44e-44 159
MsaG000493 AT1G34370.3 34.810 158 90 4 50 194 14 171 1.06e-22 98.2
MsaG000493 AT1G34370.2 34.810 158 90 4 50 194 224 381 3.63e-22 99.4
MsaG000493 AT1G34370.1 34.810 158 90 4 50 194 224 381 3.63e-22 99.4
MsaG000493 AT5G22890.1 31.395 172 103 4 36 194 185 354 4.00e-22 97.8
MsaG000493 AT1G13290.1 35.862 145 82 5 62 196 93 236 1.68e-19 89.4
MsaG000493 AT3G57670.1 35.211 142 81 5 62 194 209 348 8.79e-19 88.2
MsaG000493 AT1G51220.1 33.803 142 83 5 62 194 170 309 9.70e-19 87.4
MsaG000493 AT3G20880.1 33.803 142 83 5 62 194 248 387 1.51e-18 87.8
MsaG000493 AT1G08290.1 34.507 142 83 4 62 194 172 312 1.96e-17 83.6
MsaG000493 AT1G34790.1 32.571 175 105 5 28 194 107 276 2.03e-17 83.2

Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTAGTGCCACAAATTT+TGG 0.055414 1:+6382215 None:intergenic
TCTCATTGTTTGGCTTCTTA+TGG 0.135453 1:-6381042 MsaT000493.1:CDS
GAGGAACAATATTCCCATTT+TGG 0.167286 1:-6380859 MsaT000493.1:CDS
AACCATGGCTTTGATGAAAT+TGG 0.176098 1:+6381379 None:intergenic
CTCATTGTTTGGCTTCTTAT+GGG 0.236544 1:-6381041 MsaT000493.1:CDS
AGTAACCATGATGGAATTTC+TGG 0.247409 1:+6381312 None:intergenic
TTTGAGTTGAAAGAATTATT+AGG 0.263924 1:+6381240 None:intergenic
AGGAAGATTTCTCTTCCTTT+TGG 0.267985 1:+6383137 None:intergenic
AGAGACTTGTTCAATATATC+TGG 0.300064 1:-6380754 MsaT000493.1:CDS
GGAAACAAAGTTGTAGGGTT+AGG 0.304016 1:+6381261 None:intergenic
TGTTTGTTGCTAAGAGAGTT+TGG 0.304831 1:+6382529 None:intergenic
ATGCAAACTCACGTGCCTTC+AGG 0.323277 1:-6381108 MsaT000493.1:CDS
GTTTGTTGCTAAGAGAGTTT+GGG 0.340724 1:+6382530 None:intergenic
TTCAATATATCTGGAATTGA+TGG 0.346876 1:-6380745 MsaT000493.1:CDS
ACCATGGCTTTGATGAAATT+GGG 0.358760 1:+6381380 None:intergenic
ATGCCTTCACGTGAAGAAAT+AGG 0.359256 1:-6381078 MsaT000493.1:CDS
TTATTAGGAAACAAAGTTGT+AGG 0.372201 1:+6381255 None:intergenic
AGGGCACTTGGTGACCTAAC+TGG 0.384172 1:-6382336 MsaT000493.1:CDS
GAAACAAAGTTGTAGGGTTA+GGG 0.390096 1:+6381262 None:intergenic
AAAGCTAGCACTTGTGCCTC+AGG 0.393473 1:+6382558 None:intergenic
AGTGCTTCTTGATTCCAGTT+AGG 0.403331 1:+6382322 None:intergenic
GATAATGGTTCAAATGGGTT+GGG 0.421089 1:+6381289 None:intergenic
TGGGAGTGAGAAGAGAATAG+AGG 0.421836 1:+6381399 None:intergenic
TGATAATGGTTCAAATGGGT+TGG 0.442086 1:+6381288 None:intergenic
GGGAGTGAGAAGAGAATAGA+GGG 0.447356 1:+6381400 None:intergenic
GCACGTGAGTTTGCATTAAG+TGG 0.454018 1:+6381115 None:intergenic
TCTTGTCATCTCATGATCAT+TGG 0.454690 1:+6380807 None:intergenic
ATTTAATTACCTGGGTGGCC+AGG 0.460193 1:+6383117 None:intergenic
GCTTCTTCAGCAACCAAGAA+TGG 0.463212 1:-6383189 MsaT000493.1:CDS
TGCATTAAGTGGGGTATACA+AGG 0.466426 1:+6381126 None:intergenic
GTGTTCACCATGACCCTTCA+AGG 0.470912 1:-6382356 MsaT000493.1:CDS
GAGAGATAATAATAACTTTG+AGG 0.471825 1:-6380878 MsaT000493.1:CDS
CGTGAAGAAATAGGAACTAC+TGG 0.478841 1:-6381069 MsaT000493.1:CDS
AAAAGGAAGAGAAATCTTCC+TGG 0.478919 1:-6383135 MsaT000493.1:CDS
TATTAGGAAACAAAGTTGTA+GGG 0.486072 1:+6381256 None:intergenic
AAAGCTCATTCCAAAATTTG+TGG 0.492046 1:-6382225 MsaT000493.1:CDS
AAACTCTCTTAGCAACAAAC+AGG 0.496554 1:-6382527 MsaT000493.1:CDS
AGATTCTTACCTTGAGAAGA+GGG 0.498855 1:+6382173 None:intergenic
GGAAGCACGGTGAGAAGAAG+TGG 0.500086 1:-6382293 MsaT000493.1:CDS
CACGTGAGTTTGCATTAAGT+GGG 0.505578 1:+6381116 None:intergenic
ATCTAGAACCACAAGCCAAA+AGG 0.506626 1:-6383152 MsaT000493.1:CDS
AAATTCAAAATCAAACTCCT+TGG 0.521123 1:-6380693 MsaT000493.1:CDS
AGAGATGATGAAAGGTTTGT+CGG 0.525812 1:-6383259 None:intergenic
TGGTGAACACATGTTGGCTC+TGG 0.526908 1:+6382369 None:intergenic
CATGACCCTTCAAGGGCACT+TGG 0.527782 1:-6382348 MsaT000493.1:CDS
TCCCAATTTCATCAAAGCCA+TGG 0.529104 1:-6381381 MsaT000493.1:CDS
AACTCACGTGCCTTCAGGAA+TGG 0.529955 1:-6381103 MsaT000493.1:CDS
GTTATGCAGTTCAGTCGGAT+TGG 0.535164 1:-6382248 MsaT000493.1:CDS
TGCTTACCATGCAAACTCAA+AGG 0.555451 1:+6380721 None:intergenic
GTTCCTATTTCTTCACGTGA+AGG 0.556573 1:+6381075 None:intergenic
AGGTCACCAAGTGCCCTTGA+AGG 0.557241 1:+6382342 None:intergenic
TAAGACCAGAAATTCCATCA+TGG 0.562745 1:-6381317 MsaT000493.1:CDS
TAAACGTTATGCAGTTCAGT+CGG 0.567043 1:-6382253 MsaT000493.1:CDS
AAGATTCTTACCTTGAGAAG+AGG 0.572213 1:+6382172 None:intergenic
GATGGTCCTTTGAGTTTGCA+TGG 0.572532 1:-6380727 MsaT000493.1:CDS
CAAGTGCCCTTGAAGGGTCA+TGG 0.580343 1:+6382349 None:intergenic
TTACTGCTGCTATGAGCATG+AGG 0.586599 1:-6380918 MsaT000493.1:CDS
AAAAGCAACATTATAAAGAG+TGG 0.587418 1:-6380835 MsaT000493.1:CDS
GTGATAGTGGTTGAAAACCA+TGG 0.587939 1:+6381364 None:intergenic
TTTGTTGCTAAGAGAGTTTG+GGG 0.590009 1:+6382531 None:intergenic
GGAGTGATAGAGATGATGAA+AGG 0.590165 1:-6383267 None:intergenic
CAAAATCAAACTCCTTGGTG+AGG 0.595112 1:-6380688 None:intergenic
AGAGAGGACATAATTTGCCA+TGG 0.596190 1:-6382446 MsaT000493.1:CDS
ATTTGTGAGATTTGTAACAA+AGG 0.598660 1:-6382501 MsaT000493.1:CDS
GGTCACCAAGTGCCCTTGAA+GGG 0.601914 1:+6382343 None:intergenic
AAGCTAGCACTTGTGCCTCA+GGG 0.605138 1:+6382559 None:intergenic
CTGTGATAAAACATCACAGA+AGG 0.605312 1:+6381449 None:intergenic
TGATGTGATGTATGGTAGTG+AGG 0.613764 1:-6380965 MsaT000493.1:CDS
AATCTTCAGCTTCATAAGAG+AGG 0.614070 1:-6382462 MsaT000493.1:CDS
TGTTCACCATGACCCTTCAA+GGG 0.614167 1:-6382355 MsaT000493.1:CDS
GATGTGATGTATGGTAGTGA+GGG 0.620627 1:-6380964 MsaT000493.1:CDS
AGCAACATTATAAAGAGTGG+TGG 0.627418 1:-6380832 MsaT000493.1:CDS
AGAAATCTTCCTGGCCACCC+AGG 0.633086 1:-6383126 MsaT000493.1:intron
TGGGTTGGGAGTAACCATGA+TGG 0.633109 1:+6381303 None:intergenic
ACTGTGGAACCCTCTTCTCA+AGG 0.634375 1:-6382182 MsaT000493.1:intron
AAAGAGTATAAGTGTGACTG+TGG 0.643514 1:-6382198 MsaT000493.1:CDS
TACTGCTGCTATGAGCATGA+GGG 0.646189 1:-6380917 MsaT000493.1:CDS
AAAGCAGTGGCAGACATGTG+AGG 0.650724 1:+6381198 None:intergenic
GATGATGAAAGGTTTGTCGG+TGG 0.652402 1:-6383256 MsaT000493.1:CDS
GAAGGCATAACCATTCCTGA+AGG 0.663015 1:+6381093 None:intergenic
ACGTGAGTTTGCATTAAGTG+GGG 0.668311 1:+6381117 None:intergenic
GTGTGATTTAATTACCTGGG+TGG 0.673717 1:+6383112 None:intergenic
CCTGAATATCAGCCTCACCA+AGG 0.685282 1:+6380676 None:intergenic
GGGTCATGGTGAACACATGT+TGG 0.693614 1:+6382363 None:intergenic
ACTGCTGCTATGAGCATGAG+GGG 0.697079 1:-6380916 MsaT000493.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 6380690 6383277 6380690 ID=MsaG000493
Chr1 mRNA 6380690 6383277 6380690 ID=MsaT000493.1;Parent=MsaG000493
Chr1 exon 6380690 6381497 6380690 ID=MsaT000493.1.exon3;Parent=MsaT000493.1
Chr1 CDS 6380690 6381497 6380690 ID=cds.MsaT000493.1;Parent=MsaT000493.1
Chr1 exon 6382183 6382582 6382183 ID=MsaT000493.1.exon2;Parent=MsaT000493.1
Chr1 CDS 6382183 6382582 6382183 ID=cds.MsaT000493.1;Parent=MsaT000493.1
Chr1 exon 6383127 6383277 6383127 ID=MsaT000493.1.exon1;Parent=MsaT000493.1
Chr1 CDS 6383127 6383277 6383127 ID=cds.MsaT000493.1;Parent=MsaT000493.1
Gene Sequence

>MsaT000493.1

ATGATGAAAGGTTTGTCGGTGGATGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAGCCAAAAGGAAGAGAAATCTTCCTGGCCACCCAGACCCTGAGGCACAAGTGCTAGCTTTGAGTCCCCAAACTCTCTTAGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAGAGAGGACATAATTTGCCATGGAAGCTAAAGAAAAGAAACGTCAATGAAATCATAAGAAAGAAAGTATATGTTTGTCCAGAGCCAACATGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAACGTTATGCAGTTCAGTCGGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGACTGTGGAACCCTCTTCTCAAGAAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGTTTTATCACAGGAGAGTGCATCAATTTCAGCAGCGAACCCTCTATTCTCTTCTCACTCCCAATTTCATCAAAGCCATGGTTTTCAACCACTATCACTAAAAAAGGAACAAGACTTCAATTTAAGACCAGAAATTCCATCATGGTTACTCCCAACCCATTTGAACCATTATCAAAACCCTAACCCTACAACTTTGTTTCCTAATAATTCTTTCAACTCAAACAATATAACTACTGCTTCTCCTCACATGTCTGCCACTGCTTTGCTGCAAAAAGCATCACAAATAGGTGTAACGACAGTGAGTAAAACAGAACCTTGTATACCCCACTTAATGCAAACTCACGTGCCTTCAGGAATGGTTATGCCTTCACGTGAAGAAATAGGAACTACTGGTTTTTCTCATTGTTTGGCTTCTTATGGGAATAAAGCTGCAATAACTTCTGATTGCTTTGAAGAATCTTCTTCTCTTTTGCATGATGTGATGTATGGTAGTGAGGGCTCACATTCACAATTTGAAGCTGTTACTGCTGCTATGAGCATGAGGGGAATGTTTGATACACAGAGAGATAATAATAACTTTGAGGAACAATATTCCCATTTTGGTAAAAGCAACATTATAAAGAGTGGTGGTGCCAATGATCATGAGATGACAAGAGATTTTTTGAGTCTTGGTGCATTTTCTCAAAGAGACTTGTTCAATATATCTGGAATTGATGGTCCTTTGAGTTTGCATGGTAAGCAAAATCAAATTCAAAATCAAACTCCTTGGTGA

Protein sequence

>MsaT000493.1

MMKGLSVDENMSNLTSASSEISASSATKNGKASTNLEPQAKRKRNLPGHPDPEAQVLALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNVNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESASISAANPLFSSHSQFHQSHGFQPLSLKKEQDFNLRPEIPSWLLPTHLNHYQNPNPTTLFPNNSFNSNNITTASPHMSATALLQKASQIGVTTVSKTEPCIPHLMQTHVPSGMVMPSREEIGTTGFSHCLASYGNKAAITSDCFEESSSLLHDVMYGSEGSHSQFEAVTAAMSMRGMFDTQRDNNNFEEQYSHFGKSNIIKSGGANDHEMTRDFLSLGAFSQRDLFNISGIDGPLSLHGKQNQIQNQTPW*