AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG000497


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000497 MtrunA17_Chr1g0151241 95.722 561 24 0 330 890 20 580 0.0 1130
MsaG000497 MtrunA17_Chr1g0151301 76.536 537 124 2 349 884 13 548 0.0 877
MsaG000497 MtrunA17_Chr1g0151321 71.719 541 140 8 352 884 16 551 0.0 784
MsaG000497 MtrunA17_Chr8g0342491 55.431 534 231 4 352 881 44 574 0.0 606
MsaG000497 MtrunA17_Chr2g0330151 54.307 534 237 4 352 881 44 574 0.0 605
MsaG000497 MtrunA17_Chr1g0151261 96.599 294 5 3 1 292 1 291 0.0 585
MsaG000497 MtrunA17_Chr7g0266641 51.391 539 250 6 349 881 41 573 0.0 575
MsaG000497 MtrunA17_Chr1g0178391 51.515 528 248 6 355 879 43 565 0.0 561
MsaG000497 MtrunA17_Chr4g0056501 46.314 529 275 6 356 881 112 634 5.46e-156 472
MsaG000497 MtrunA17_Chr3g0079291 42.403 566 308 9 323 881 69 623 7.37e-151 458
MsaG000497 MtrunA17_Chr5g0427521 54.366 355 151 6 373 716 11 365 5.02e-133 403
MsaG000497 MtrunA17_Chr1g0151281 77.436 195 43 1 385 578 76 270 1.86e-105 327
MsaG000497 MtrunA17_Chr1g0151271 73.301 206 54 1 675 880 1 205 7.63e-98 305
MsaG000497 MtrunA17_Chr1g0153141 47.458 295 115 9 3 292 19 278 8.16e-64 218
MsaG000497 MtrunA17_Chr3g0122091 45.296 287 133 6 51 313 91 377 6.05e-63 218
MsaG000497 MtrunA17_Chr5g0427511 52.663 169 79 1 714 881 21 189 1.18e-50 176
MsaG000497 MtrunA17_Chr1g0151251 60.000 75 29 1 585 659 33 106 7.70e-27 105
MsaG000497 MtrunA17_Chr1g0151251 96.296 27 1 0 295 321 80 106 4.76e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000497 AT3G13790.1 57.993 538 214 7 353 881 49 583 0.0 630
MsaG000497 AT1G55120.1 56.215 539 225 5 353 881 36 573 0.0 629
MsaG000497 AT5G11920.1 57.250 531 219 6 356 881 17 544 0.0 620
MsaG000497 AT3G13790.2 57.435 538 214 8 353 881 49 580 0.0 618
MsaG000497 AT1G55120.4 55.556 522 221 5 370 881 13 533 0.0 597
MsaG000497 AT1G55120.2 55.299 519 221 5 373 881 17 534 0.0 589
MsaG000497 AT1G55120.3 55.192 520 222 5 372 881 40 558 0.0 589
MsaG000497 AT3G13784.2 54.461 538 232 8 351 879 38 571 0.0 586
MsaG000497 AT3G13790.5 57.171 516 209 7 375 881 1 513 0.0 585
MsaG000497 AT3G13790.4 57.171 516 209 7 375 881 1 513 0.0 585
MsaG000497 AT3G13790.3 57.171 516 209 7 375 881 1 513 0.0 585
MsaG000497 AT5G11920.3 56.641 512 214 6 375 881 1 509 0.0 583
MsaG000497 AT3G13784.4 54.089 538 234 8 351 879 38 571 0.0 580
MsaG000497 AT3G13784.1 53.903 538 232 9 351 879 38 568 0.0 574
MsaG000497 AT3G13784.3 53.359 521 230 8 368 879 2 518 0.0 551
MsaG000497 AT3G52600.1 50.093 535 254 5 355 877 47 580 0.0 539
MsaG000497 AT2G36190.1 48.405 533 263 4 355 876 49 580 2.16e-175 520
MsaG000497 AT3G52600.3 49.808 520 248 5 370 877 8 526 2.93e-173 513
MsaG000497 AT3G52600.2 49.320 515 248 5 375 877 1 514 5.42e-169 501
MsaG000497 AT5G11920.2 57.801 391 158 5 356 741 17 405 1.93e-156 465
MsaG000497 AT1G12240.1 43.364 535 289 9 356 881 121 650 1.27e-146 449
MsaG000497 AT5G52010.1 68.259 293 85 2 7 291 19 311 1.33e-142 429
MsaG000497 AT1G62660.1 42.322 534 295 9 356 881 106 634 4.80e-140 431
MsaG000497 AT1G62660.2 41.731 520 290 9 370 881 22 536 2.65e-131 405
MsaG000497 AT1G62660.4 39.700 466 269 8 424 881 7 468 6.46e-107 339
MsaG000497 AT1G62660.3 39.700 466 269 8 424 881 7 468 6.46e-107 339
MsaG000497 AT4G12240.1 46.468 269 139 4 25 290 11 277 5.72e-66 225

Find 220 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGAAGCTCTAAATATT+TGG 0.163365 1:-6439227 None:intergenic
CAGGAACTAGTAAAGATTTA+AGG 0.164707 1:+6438188 MsaT000497.1:CDS
TGTCCTATGATCTCATTAAT+TGG 0.208626 1:+6437576 MsaT000497.1:CDS
GGGGATGTTGATAGGGCTTT+AGG 0.212583 1:+6431723 MsaT000497.1:CDS
AAGGCTAGAGAGGCCAATTT+AGG 0.226076 1:+6431687 MsaT000497.1:CDS
TGGATACGAGGTTGGGGTTT+TGG 0.235659 1:-6430976 None:intergenic
AAGTAGAGTGTATCCTTTAT+TGG 0.244964 1:+6439812 MsaT000497.1:CDS
GTTCCTGATGTAGAGTTTAC+AGG 0.256067 1:+6438169 MsaT000497.1:CDS
AAAGCGTCGGTTAGATTCTT+TGG 0.262309 1:-6437749 None:intergenic
GCATCAAGAAGTGGCAAAAT+AGG 0.267466 1:+6439144 MsaT000497.1:CDS
GGGATGTTGATAGGGCTTTA+GGG 0.271261 1:+6431724 MsaT000497.1:CDS
AAAGTGAGGATTTCGTTAAT+TGG 0.282294 1:+6437939 MsaT000497.1:CDS
GTGTATATCAATAGTACTAA+TGG 0.286181 1:+6438031 MsaT000497.1:CDS
GAAAGGATGGGCAGGTTTAC+AGG 0.290146 1:+6438321 MsaT000497.1:CDS
AACAACAACAGTCCCTAAAT+TGG 0.303839 1:-6431700 None:intergenic
GAAGAAGAGGCAAAAGTATA+AGG 0.310905 1:+6431425 MsaT000497.1:CDS
TTGTTGTTGGGGATGTTGAT+AGG 0.320262 1:+6431715 MsaT000497.1:CDS
AAGTCCATTATTGAGAGTTT+TGG 0.321216 1:+6439765 MsaT000497.1:CDS
ATCTCCAAAACTCTCAATAA+TGG 0.325601 1:-6439769 None:intergenic
ATTTAGGGACTGTTGTTGTT+GGG 0.328367 1:+6431703 MsaT000497.1:CDS
AGAAGTATAATGATGCTGTT+AGG 0.333113 1:+6431469 MsaT000497.1:CDS
AGACAATTCCAAGGCAAGTT+TGG 0.339596 1:+6438781 MsaT000497.1:intron
ATCTAACCGACGCTTTCTTA+AGG 0.343018 1:+6437756 MsaT000497.1:CDS
TTAGGTATCCTGTACTTGAT+AGG 0.345975 1:-6436297 None:intergenic
TGGTAAATATGTTTCTGATA+AGG 0.350299 1:+6438138 MsaT000497.1:CDS
GAGAGATAGGGCGGCGTTGT+AGG 0.354988 1:-6431124 None:intergenic
GGCATGGAAAAGATGGAAAA+TGG 0.361827 1:+6437864 MsaT000497.1:CDS
TGTATATCAATAGTACTAAT+GGG 0.367638 1:+6438032 MsaT000497.1:CDS
AAAGATTTAAGGTTTGACTA+TGG 0.368584 1:+6438199 MsaT000497.1:CDS
AAACTAGATGACATCCAAAA+AGG 0.371756 1:+6433495 MsaT000497.1:CDS
GACAAACAGATCAATATTAC+AGG 0.372976 1:+6438864 MsaT000497.1:CDS
TTTCTGTTAAACAGTAGAAA+TGG 0.374569 1:+6436240 MsaT000497.1:intron
AGTGGCAAAATAGGACCATT+TGG 0.377596 1:+6439153 MsaT000497.1:CDS
CCTCAACATCTCACTAAAAT+CGG 0.381248 1:-6431664 None:intergenic
CTTTCATTCATCTCCCTCAA+TGG 0.383729 1:+6431208 MsaT000497.1:CDS
CATTTGGTGATATAATTGTA+TGG 0.383801 1:+6437543 MsaT000497.1:CDS
AATTTAGGGACTGTTGTTGT+TGG 0.384290 1:+6431702 MsaT000497.1:CDS
ATCCTCACTTTGATAAAGAA+TGG 0.385139 1:-6437927 None:intergenic
TGAGGGAGAGGAAGGAGTGG+GGG 0.390477 1:-6430951 None:intergenic
TTGTTCGTAGGTTCCTTGTT+TGG 0.390669 1:-6431043 None:intergenic
TCTAACCGACGCTTTCTTAA+GGG 0.392576 1:+6437757 MsaT000497.1:CDS
TTGAGGGAGAGGAAGGAGTG+GGG 0.392883 1:-6430952 None:intergenic
GACATCAACAGTTGTTGGTC+AGG 0.396812 1:+6437638 MsaT000497.1:CDS
CTATGAGTAGAGGGATTGAT+TGG 0.397433 1:+6431619 MsaT000497.1:CDS
GCCCAAAGTTGGGTATGGTT+TGG 0.398316 1:+6431503 MsaT000497.1:CDS
GACCTTGATAAAACCACATA+TGG 0.400300 1:+6439598 MsaT000497.1:CDS
CCGCGAGGGATTTGAGAGAT+AGG 0.400796 1:-6431137 None:intergenic
AATCCACTTGCAGCAACATT+TGG 0.404498 1:+6437527 MsaT000497.1:CDS
TATGGTTCGAAGTCATAAAC+TGG 0.405225 1:+6433436 MsaT000497.1:intron
ACAGCATTGGATACGAGGTT+GGG 0.406801 1:-6430983 None:intergenic
GCCAAACCATACCCAACTTT+GGG 0.407117 1:-6431504 None:intergenic
AGGGAGGCATGCTGATTTGT+GGG 0.407902 1:+6431743 MsaT000497.1:CDS
AAAACAAAGTCTGTGTCCTC+TGG 0.411202 1:+6431070 MsaT000497.1:CDS
GTGGATTATGTTGGTAGAAA+AGG 0.411627 1:-6437511 None:intergenic
AGGCTAGAGAGGCCAATTTA+GGG 0.414886 1:+6431688 MsaT000497.1:CDS
AGTGAAATCGTTCTGAGATT+AGG 0.417775 1:-6439640 None:intergenic
AGCCAAACCATACCCAACTT+TGG 0.420939 1:-6431505 None:intergenic
GAGGGAGAGGAAGGAGTGGG+GGG 0.421552 1:-6430950 None:intergenic
GTAATTGTCGGTGCTCAAAA+TGG 0.421595 1:+6437890 MsaT000497.1:CDS
GAACCGTTTGAATTCTTTGA+AGG 0.425604 1:+6431401 MsaT000497.1:CDS
TCTTTCTCTATAGCCAATAA+AGG 0.427496 1:-6439825 None:intergenic
AATCCAATTAATGAGATCAT+AGG 0.428261 1:-6437579 None:intergenic
CTTCGGAGTTGAGGAGAGCC+GGG 0.432660 1:+6431526 MsaT000497.1:CDS
AACGATTTCACTTAGAAGCT+TGG 0.433252 1:+6439651 MsaT000497.1:CDS
TAAGCCTCAAGCTGCTGATT+GGG 0.436038 1:+6431572 MsaT000497.1:CDS
TTATCAAGCCAAACTTGCCT+TGG 0.436792 1:-6438789 None:intergenic
GTTTGAGGGAGAGGAAGGAG+TGG 0.437067 1:-6430954 None:intergenic
TACGTTCACGGCGTTGGTTG+AGG 0.437574 1:-6431233 None:intergenic
CGACGCTTTCTTAAGGGAAT+GGG 0.440309 1:+6437763 MsaT000497.1:CDS
ATAAGCCTCAAGCTGCTGAT+TGG 0.442172 1:+6431571 MsaT000497.1:CDS
TTTCATTCATCTCCCTCAAT+GGG 0.443339 1:+6431209 MsaT000497.1:CDS
GCTTCGGAGTTGAGGAGAGC+CGG 0.446052 1:+6431525 MsaT000497.1:CDS
TAGGGAGGCATGCTGATTTG+TGG 0.446184 1:+6431742 MsaT000497.1:CDS
CTGTGGATAATTCAAGTGTT+AGG 0.450034 1:+6438065 MsaT000497.1:CDS
TCCCCTTCAAAGAATTCAAA+CGG 0.451680 1:-6431404 None:intergenic
GATGTCGATTATGTTGTTGT+TGG 0.451846 1:-6431007 None:intergenic
AAAAGGATGGGCTGATGTAC+AGG 0.457396 1:+6433512 MsaT000497.1:CDS
ATGTTAGAAATAACCTGCTT+TGG 0.458700 1:-6439275 None:intergenic
CCGACGCTTTCTTAAGGGAA+TGG 0.459205 1:+6437762 MsaT000497.1:CDS
TTTCCATGCCATGCAGTTGA+AGG 0.459536 1:-6437851 None:intergenic
AGTTGGGTATGGTTTGGCTT+CGG 0.460925 1:+6431509 MsaT000497.1:CDS
AGAGATAGGGCGGCGTTGTA+GGG 0.461281 1:-6431123 None:intergenic
TTTGTTAGCTTTAGCTTCAA+AGG 0.461959 1:+6439176 MsaT000497.1:CDS
CACTCACCACTTTCTAGCTT+AGG 0.467120 1:-6439069 None:intergenic
GGCTCAACTCTTGAAGTCTC+AGG 0.470937 1:+6438903 MsaT000497.1:CDS
TTTGAGGGAGAGGAAGGAGT+GGG 0.471205 1:-6430953 None:intergenic
ACTGCATGGCATGGAAAAGA+TGG 0.475008 1:+6437857 MsaT000497.1:CDS
ACAGAACATACATACGGTTC+AGG 0.475535 1:-6431297 None:intergenic
AGCATGAAGCATGCAGAGAT+AGG 0.476022 1:+6439912 MsaT000497.1:CDS
CAACAACTGTTGATGTCATA+AGG 0.480132 1:-6437632 None:intergenic
ATACACCTTTGTAGTACATA+GGG 0.480710 1:-6437484 None:intergenic
CAAGTTTGGCTTGATAAAAG+TGG 0.481311 1:+6438795 MsaT000497.1:CDS
GGGTGTAGAAGTGGAGAGTG+TGG 0.482014 1:-6430930 None:intergenic
TGATGATACCTTTGCGTTCG+AGG 0.484797 1:-6431269 None:intergenic
AGCGTGGCGGTTGGCGTAGG+CGG 0.485906 1:-6431187 None:intergenic
TAAGAATAGGAGAATATTGT+GGG 0.486642 1:+6438258 MsaT000497.1:CDS
TTATCTCAAAACTGAATGCT+TGG 0.486774 1:+6439889 MsaT000497.1:CDS
ATAGGAGAATATTGTGGGGA+TGG 0.491734 1:+6438263 MsaT000497.1:CDS
TAGGAGAATATTGTGGGGAT+GGG 0.492789 1:+6438264 MsaT000497.1:CDS
TTCCATGCCATGCAGTTGAA+GGG 0.493420 1:-6437850 None:intergenic
TTGAAGCCCAAAGTTGGGTA+TGG 0.495748 1:+6431498 MsaT000497.1:CDS
AACAGCATTGGATACGAGGT+TGG 0.496049 1:-6430984 None:intergenic
GATATAGAGAAAGGATGGGC+AGG 0.496476 1:+6438313 MsaT000497.1:CDS
TGTTGTTGGGGATGTTGATA+GGG 0.498608 1:+6431716 MsaT000497.1:CDS
GTCGAAGATTGCTCCATATG+TGG 0.498980 1:-6439611 None:intergenic
GAAGTATAATGATGCTGTTA+GGG 0.500181 1:+6431470 MsaT000497.1:CDS
AAGATGATATAGAGAAAGGA+TGG 0.502302 1:+6438308 MsaT000497.1:CDS
CCGTGGAATGCTGTCGAGAA+TGG 0.503379 1:+6431768 MsaT000497.1:CDS
GTAGAAGTGGAGAGTGTGGA+GGG 0.504165 1:-6430926 None:intergenic
CATAAACTGGAGAATATTGT+GGG 0.507921 1:+6433449 MsaT000497.1:CDS
ATTCCTGTGTACAAAATAGC+AGG 0.510238 1:-6437689 None:intergenic
GCTAAAGCTAACAAACCAAA+TGG 0.510298 1:-6439168 None:intergenic
AAATCCCTCGCGGAACGCTT+CGG 0.510847 1:+6431147 MsaT000497.1:CDS
CTTCATTATGCAGATCCAAA+TGG 0.511179 1:+6436549 MsaT000497.1:intron
TCACCAAATGTTGCTGCAAG+TGG 0.513455 1:-6437530 None:intergenic
GTTCCTGTAAACTCTACATC+AGG 0.516578 1:-6438172 None:intergenic
CTCACTAAAATCGGAATCAT+CGG 0.517860 1:-6431655 None:intergenic
TGTAGAAGTGGAGAGTGTGG+AGG 0.519402 1:-6430927 None:intergenic
CTAAGAATAGGAGAATATTG+TGG 0.519989 1:+6438257 MsaT000497.1:CDS
CGCGTGGTGGTTTGTTGTCG+AGG 0.523493 1:-6431095 None:intergenic
TGTTGTTGTTGGAACAGCAT+TGG 0.523984 1:-6430996 None:intergenic
ATTTGGTGATATAATTGTAT+GGG 0.524715 1:+6437544 MsaT000497.1:CDS
AGTTGAGGATCAACTTCACT+TGG 0.527811 1:-6439102 None:intergenic
TCATAAACTGGAGAATATTG+TGG 0.529589 1:+6433448 MsaT000497.1:CDS
AACCATTCTTTATCAAAGTG+AGG 0.532041 1:+6437925 MsaT000497.1:CDS
CGCGAGGGATTTGAGAGATA+GGG 0.536732 1:-6431136 None:intergenic
CAGCATTGGATACGAGGTTG+GGG 0.537610 1:-6430982 None:intergenic
TTTAGGGACTGTTGTTGTTG+GGG 0.539520 1:+6431704 MsaT000497.1:CDS
GAAAGCGTGGCGGTTGGCGT+AGG 0.541220 1:-6431190 None:intergenic
GTTGGTTGAGGACCCATTGA+GGG 0.541679 1:-6431221 None:intergenic
CACAATCTGTATTTCCCTCA+TGG 0.542893 1:-6439935 None:intergenic
AACCGTTTGAATTCTTTGAA+GGG 0.544942 1:+6431402 MsaT000497.1:CDS
GACCCTTCAACTGCATGGCA+TGG 0.549589 1:+6437848 MsaT000497.1:CDS
CGTTGGTTGAGGACCCATTG+AGG 0.553331 1:-6431222 None:intergenic
AAACAAAGTCTGTGTCCTCT+GGG 0.558785 1:+6431071 MsaT000497.1:CDS
TGAGGATTTCGTTAATTGGA+CGG 0.559151 1:+6437943 MsaT000497.1:CDS
ACTGGAGAATATTGTGGGCA+TGG 0.560867 1:+6433454 MsaT000497.1:CDS
ATTACAGGAGAGAAACTTGA+GGG 0.561402 1:+6438879 MsaT000497.1:CDS
CTTATGACATCAACAGTTGT+TGG 0.561670 1:+6437633 MsaT000497.1:CDS
CCACTAGGTGGAGTCATCAC+AGG 0.562322 1:-6437803 None:intergenic
AAACAGTAGAAATGGAATTG+AGG 0.565381 1:+6436248 MsaT000497.1:intron
ACGCAAGATGATATAGAGAA+AGG 0.566752 1:+6438304 MsaT000497.1:CDS
CATCTTTATGTATTCAACAA+TGG 0.568155 1:+6439852 MsaT000497.1:CDS
TATACACCTTTGTAGTACAT+AGG 0.570250 1:-6437485 None:intergenic
GGTGCTCAAAATGGTGATGA+AGG 0.571473 1:+6437899 MsaT000497.1:CDS
ATGAATGAAAGCGTGGCGGT+TGG 0.572273 1:-6431196 None:intergenic
GATTATGTTGGTAGAAAAGG+TGG 0.572926 1:-6437508 None:intergenic
TCCACCTAGTGGAGTTGAAG+AGG 0.573176 1:+6437814 MsaT000497.1:CDS
ATTCTTTGAAGGGGAAGAAG+AGG 0.573313 1:+6431412 MsaT000497.1:CDS
AAAGCCCAATCAGCAGCTTG+AGG 0.574075 1:-6431576 None:intergenic
AAGTTTGGCTTGATAAAAGT+GGG 0.574645 1:+6438796 MsaT000497.1:CDS
CTTTGCGTTCGAGGAAGTCG+AGG 0.575865 1:-6431260 None:intergenic
TGATGTGCAGTGACCAAAGC+AGG 0.576197 1:+6439262 MsaT000497.1:CDS
GGAAAATGGAGGGTAATTGT+CGG 0.577503 1:+6437878 MsaT000497.1:CDS
AAACAATATGCATCAAGAAG+TGG 0.579094 1:+6439135 MsaT000497.1:CDS
GATGTTGAGGAAGGCTAGAG+AGG 0.579429 1:+6431677 MsaT000497.1:CDS
TGTTTGCTACATAATAGTTG+AGG 0.580062 1:-6439117 None:intergenic
TGATGCATTCTATGAGTAGA+GGG 0.580660 1:+6431610 MsaT000497.1:CDS
GAGCTACCTAAGCTAGAAAG+TGG 0.582940 1:+6439063 MsaT000497.1:CDS
ATGGTTTGGCTTCGGAGTTG+AGG 0.585237 1:+6431517 MsaT000497.1:CDS
GTATTGATCCTATCAAGTAC+AGG 0.587930 1:+6436289 MsaT000497.1:CDS
GTCGCCGAAGCGTTCCGCGA+GGG 0.588568 1:-6431151 None:intergenic
AGCTTGAGGCTTATCCTCCA+CGG 0.593303 1:-6431562 None:intergenic
ACCGTTTGAATTCTTTGAAG+GGG 0.594952 1:+6431403 MsaT000497.1:CDS
AACATTGCTCTTGAACCAAG+TGG 0.595021 1:+6437608 MsaT000497.1:CDS
ATGATGCATTCTATGAGTAG+AGG 0.597154 1:+6431609 MsaT000497.1:CDS
CTCGACTTCCTCGAACGCAA+AGG 0.597673 1:+6431261 MsaT000497.1:CDS
TTATCCTCTTCAACTCCACT+AGG 0.598590 1:-6437818 None:intergenic
TTGGAACAGCATTGGATACG+AGG 0.599990 1:-6430988 None:intergenic
GATAGGGCGGCGTTGTAGGG+TGG 0.601999 1:-6431120 None:intergenic
TTAGAGACCCTTCAACTGCA+TGG 0.602044 1:+6437843 MsaT000497.1:CDS
CCATTCTCGACAGCATTCCA+CGG 0.605096 1:-6431768 None:intergenic
GGTTCAGCCACTATACTCCC+AGG 0.605138 1:+6437659 MsaT000497.1:CDS
CATGCAGAGATAGGCCATGA+GGG 0.607754 1:+6439921 MsaT000497.1:CDS
TGGCAATGTAGACAATTCCA+AGG 0.607787 1:+6438772 MsaT000497.1:intron
CCGTATGTATGTTCTGTATG+TGG 0.607936 1:+6431303 MsaT000497.1:CDS
TATCAATAGTACTAATGGGG+TGG 0.610925 1:+6438036 MsaT000497.1:CDS
GTTGGCGTAGGCGGAGATGT+CGG 0.611127 1:-6431178 None:intergenic
CTCAGGCATCAATGCATCAG+AGG 0.615943 1:+6438920 MsaT000497.1:CDS
CAACATAATCGACATCGACA+TGG 0.615996 1:+6431014 MsaT000497.1:CDS
TTGATGTCATAAGGTCCACT+TGG 0.616532 1:-6437623 None:intergenic
ATGGAAAAGATGGAAAATGG+AGG 0.623713 1:+6437867 MsaT000497.1:CDS
CCATTCCCTTAAGAAAGCGT+CGG 0.624107 1:-6437762 None:intergenic
CCACATACAGAACATACATA+CGG 0.624663 1:-6431303 None:intergenic
TTGTAGGGTGGTCCGCGTGG+TGG 0.626810 1:-6431108 None:intergenic
GAACATACATACGGTTCAGG+TGG 0.629176 1:-6431294 None:intergenic
GATACAGTGGCCAATTGAAG+AGG 0.629577 1:+6438827 MsaT000497.1:CDS
GTGCTCAAAATGGTGATGAA+GGG 0.633107 1:+6437900 MsaT000497.1:CDS
TCCTCTTCAACTCCACTAGG+TGG 0.634405 1:-6437815 None:intergenic
GTGGGAAGAGATTGATACAG+TGG 0.634457 1:+6438814 MsaT000497.1:CDS
CCTGTGATGACTCCACCTAG+TGG 0.641854 1:+6437803 MsaT000497.1:CDS
TTCGGAGTTGAGGAGAGCCG+GGG 0.646906 1:+6431527 MsaT000497.1:CDS
CTAAGCTAGAAAGTGGTGAG+TGG 0.649783 1:+6439070 MsaT000497.1:CDS
TGGAAAAGATGGAAAATGGA+GGG 0.651406 1:+6437868 MsaT000497.1:CDS
TAATGGGGTGGATACATCTG+TGG 0.653909 1:+6438048 MsaT000497.1:CDS
ATGTTGATAGGGCTTTAGGG+AGG 0.654086 1:+6431727 MsaT000497.1:CDS
AGATGATATAGAGAAAGGAT+GGG 0.654785 1:+6438309 MsaT000497.1:CDS
TTAGTACTATTGATATACAC+AGG 0.657868 1:-6438028 None:intergenic
GTATATCAATAGTACTAATG+GGG 0.660746 1:+6438033 MsaT000497.1:CDS
GAGGGAGATGAATGAAAGCG+TGG 0.669504 1:-6431203 None:intergenic
TATTACAGGAGAGAAACTTG+AGG 0.670674 1:+6438878 MsaT000497.1:CDS
CAACAATGGAAGTCAGAGTG+TGG 0.671906 1:+6439866 MsaT000497.1:CDS
GCATGCAGAGATAGGCCATG+AGG 0.672091 1:+6439920 MsaT000497.1:CDS
ATGCTGATTTGTGGGTGCCG+TGG 0.676696 1:+6431751 MsaT000497.1:CDS
CGTCGCCGAAGCGTTCCGCG+AGG 0.679767 1:-6431152 None:intergenic
CGGGGTGTTTGTGAAGACCG+TGG 0.682036 1:+6431545 MsaT000497.1:CDS
TATAAGGAGAGATATGTGAG+TGG 0.683928 1:+6431441 MsaT000497.1:CDS
TTGCTGCAAGTGGATTATGT+TGG 0.684182 1:-6437520 None:intergenic
GCGTTGTAGGGTGGTCCGCG+TGG 0.689378 1:-6431111 None:intergenic
GTTTGTTGTCGAGGTCCCAG+AGG 0.689800 1:-6431086 None:intergenic
GCAGCCCCTATGTACTACAA+AGG 0.696410 1:+6437479 MsaT000497.1:intron
CACGGTCTTCACAAACACCC+CGG 0.699093 1:-6431544 None:intergenic
TACACCTTTGTAGTACATAG+GGG 0.703188 1:-6437483 None:intergenic
CTCGACAACAAACCACCACG+CGG 0.706944 1:+6431096 MsaT000497.1:CDS
GAGGGATTTGAGAGATAGGG+CGG 0.708759 1:-6431133 None:intergenic
ACAGGAGAGAAACTTGAGGG+TGG 0.721046 1:+6438882 MsaT000497.1:CDS
AAGAATAGGAGAATATTGTG+GGG 0.727814 1:+6438259 MsaT000497.1:CDS
GGTGTTTGTGAAGACCGTGG+AGG 0.763606 1:+6431548 MsaT000497.1:CDS
CCTATCTCTCAAATCCCTCG+CGG 0.763751 1:+6431137 MsaT000497.1:CDS
GGAGATGAATGAAAGCGTGG+CGG 0.793373 1:-6431200 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 6430913 6439962 6430913 ID=MsaG000497
Chr1 mRNA 6430913 6439962 6430913 ID=MsaT000497.1;Parent=MsaG000497
Chr1 exon 6430913 6431789 6430913 ID=MsaT000497.1.exon1;Parent=MsaT000497.1
Chr1 CDS 6430913 6431789 6430913 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6433448 6433533 6433448 ID=MsaT000497.1.exon2;Parent=MsaT000497.1
Chr1 CDS 6433448 6433533 6433448 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6435497 6435519 6435497 ID=MsaT000497.1.exon3;Parent=MsaT000497.1
Chr1 CDS 6435497 6435519 6435497 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6436254 6436375 6436254 ID=MsaT000497.1.exon4;Parent=MsaT000497.1
Chr1 CDS 6436254 6436375 6436254 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6436562 6436570 6436562 ID=MsaT000497.1.exon5;Parent=MsaT000497.1
Chr1 CDS 6436562 6436570 6436562 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6437483 6438342 6437483 ID=MsaT000497.1.exon6;Parent=MsaT000497.1
Chr1 CDS 6437483 6438342 6437483 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6438783 6438941 6438783 ID=MsaT000497.1.exon7;Parent=MsaT000497.1
Chr1 CDS 6438783 6438941 6438783 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6439042 6439283 6439042 ID=MsaT000497.1.exon8;Parent=MsaT000497.1
Chr1 CDS 6439042 6439283 6439042 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6439582 6439672 6439582 ID=MsaT000497.1.exon9;Parent=MsaT000497.1
Chr1 CDS 6439582 6439672 6439582 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Chr1 exon 6439759 6439962 6439759 ID=MsaT000497.1.exon10;Parent=MsaT000497.1
Chr1 CDS 6439759 6439962 6439759 ID=cds.MsaT000497.1;Parent=MsaT000497.1
Gene Sequence

>MsaT000497.1

ATGAATACTCTCTCCCTCCACACTCTCCACTTCTACACCCCCCACTCCTTCCTCTCCCTCAAACCAAAACCCCAACCTCGTATCCAATGCTGTTCCAACAACAACATAATCGACATCGACATGGTAAAAACCAAACAAGGAACCTACGAACAAAAACAAAACAAAGTCTGTGTCCTCTGGGACCTCGACAACAAACCACCACGCGGACCACCCTACAACGCCGCCCTATCTCTCAAATCCCTCGCGGAACGCTTCGGCGACGTAACCGACATCTCCGCCTACGCCAACCGCCACGCTTTCATTCATCTCCCTCAATGGGTCCTCAACCAACGCCGTGAACGTAAAAACCTCGACTTCCTCGAACGCAAAGGTATCATCAATCCACCTGAACCGTATGTATGTTCTGTATGTGGTAGAAAATGTAAAACTAACGTAGATCTTAAGAAACACTTTAAGCAGCTTCATCAACGTGAGAGACAGAAGAAGCTGAACCGTTTGAATTCTTTGAAGGGGAAGAAGAGGCAAAAGTATAAGGAGAGATATGTGAGTGGTGATGAGAAGTATAATGATGCTGTTAGGGAGATTTTGAAGCCCAAAGTTGGGTATGGTTTGGCTTCGGAGTTGAGGAGAGCCGGGGTGTTTGTGAAGACCGTGGAGGATAAGCCTCAAGCTGCTGATTGGGCTTTGAAGAAGCAGATGATGCATTCTATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCCGATGATTCCGATTTTAGTGAGATGTTGAGGAAGGCTAGAGAGGCCAATTTAGGGACTGTTGTTGTTGGGGATGTTGATAGGGCTTTAGGGAGGCATGCTGATTTGTGGGTGCCGTGGAATGCTGTCGAGAATGTCATAAACTGGAGAATATTGTGGGCATGGATGAGCAAGTCTTTCACCAAACTAGATGACATCCAAAAAGGATGGGCTGATGTACAGGGAGAGAGATCAAGATCTGCCCTTAGAAATGGAATTGAGGCATCAACATATAGTAACAGTATTGATCCTATCAAGTACAGGATACCTAAAGAACAACCTTACAAAACTTCTTATCATTTTCAGCCCCCACAAAATTGGATGAACGATCCAAATGCCCCTATGTACTACAAAGGTGTATACCACCTTTTCTACCAACATAATCCACTTGCAGCAACATTTGGTGATATAATTGTATGGGCTCATTCTGTGTCCTATGATCTCATTAATTGGATTCATCTCAACATTGCTCTTGAACCAAGTGGACCTTATGACATCAACAGTTGTTGGTCAGGTTCAGCCACTATACTCCCAGGTGAAAAACCTGCTATTTTGTACACAGGAATTGATCACAATAAGAATGAAGTTCAGAACTTAGCTATACCAAAGAATCTAACCGACGCTTTCTTAAGGGAATGGGAAAAACACCCTCAAAATCCTGTGATGACTCCACCTAGTGGAGTTGAAGAGGATAACTTTAGAGACCCTTCAACTGCATGGCATGGAAAAGATGGAAAATGGAGGGTAATTGTCGGTGCTCAAAATGGTGATGAAGGGAAAACCATTCTTTATCAAAGTGAGGATTTCGTTAATTGGACGGTGAATCCAAATCCATTTTTTGCAACAGATAATACTGGAGTTTGTGAATGTCCAGACTTTTTTCCTGTGTATATCAATAGTACTAATGGGGTGGATACATCTGTGGATAATTCAAGTGTTAGGCATGTTTTGAAGATAAGCTATCTAAGAAAACAGCATGACTACTATTTTCTTGGTAAATATGTTTCTGATAAGGAAAACTTTGTTCCTGATGTAGAGTTTACAGGAACTAGTAAAGATTTAAGGTTTGACTATGGTAAATTTTATGCTTCAAAATCATTTTTTGACTATGCTAAGAATAGGAGAATATTGTGGGGATGGGTGAATGAGTCTGACTCTACGCAAGATGATATAGAGAAAGGATGGGCAGGTTTACAGACAATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGAGATTGATACAGTGGCCAATTGAAGAGGTAGAAAAACTAAGAGACAAACAGATCAATATTACAGGAGAGAAACTTGAGGGTGGCTCAACTCTTGAAGTCTCAGGCATCAATGCATCAGAGGTTGATGTAGAAGTGTTGTTTGAGCTACCTAAGCTAGAAAGTGGTGAGTGGTTAGAAGATCCAAGTGAAGTTGATCCTCAACTATTATGTAGCAAACAATATGCATCAAGAAGTGGCAAAATAGGACCATTTGGTTTGTTAGCTTTAGCTTCAAAGGATTTGACAGAGCAAACAGCAGTGTCTTTCCAAATATTTAGAGCTTCAAATAGATATTTATGTCTGATGTGCAGTGACCAAAGCAGGTCTTCATTGCGAAACGACCTTGATAAAACCACATATGGAGCAATCTTCGACATAGATCCTAATCTCAGAACGATTTCACTTAGAAGCTTGATTGACAAGTCCATTATTGAGAGTTTTGGAGATGGAGGTAAAGTTGTGATAACAAGTAGAGTGTATCCTTTATTGGCTATAGAGAAAGATGCACATCTTTATGTATTCAACAATGGAAGTCAGAGTGTGGTTATCTCAAAACTGAATGCTTGGAGCATGAAGCATGCAGAGATAGGCCATGAGGGAAATACAGATTGTGCTTAA

Protein sequence

>MsaT000497.1

MNTLSLHTLHFYTPHSFLSLKPKPQPRIQCCSNNNIIDIDMVKTKQGTYEQKQNKVCVLWDLDNKPPRGPPYNAALSLKSLAERFGDVTDISAYANRHAFIHLPQWVLNQRRERKNLDFLERKGIINPPEPYVCSVCGRKCKTNVDLKKHFKQLHQRERQKKLNRLNSLKGKKRQKYKERYVSGDEKYNDAVREILKPKVGYGLASELRRAGVFVKTVEDKPQAADWALKKQMMHSMSRGIDWLFLVSDDSDFSEMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVENVINWRILWAWMSKSFTKLDDIQKGWADVQGERSRSALRNGIEASTYSNSIDPIKYRIPKEQPYKTSYHFQPPQNWMNDPNAPMYYKGVYHLFYQHNPLAATFGDIIVWAHSVSYDLINWIHLNIALEPSGPYDINSCWSGSATILPGEKPAILYTGIDHNKNEVQNLAIPKNLTDAFLREWEKHPQNPVMTPPSGVEEDNFRDPSTAWHGKDGKWRVIVGAQNGDEGKTILYQSEDFVNWTVNPNPFFATDNTGVCECPDFFPVYINSTNGVDTSVDNSSVRHVLKISYLRKQHDYYFLGKYVSDKENFVPDVEFTGTSKDLRFDYGKFYASKSFFDYAKNRRILWGWVNESDSTQDDIEKGWAGLQTIPRQVWLDKSGKRLIQWPIEEVEKLRDKQINITGEKLEGGSTLEVSGINASEVDVEVLFELPKLESGEWLEDPSEVDPQLLCSKQYASRSGKIGPFGLLALASKDLTEQTAVSFQIFRASNRYLCLMCSDQSRSSLRNDLDKTTYGAIFDIDPNLRTISLRSLIDKSIIESFGDGGKVVITSRVYPLLAIEKDAHLYVFNNGSQSVVISKLNAWSMKHAEIGHEGNTDCA*