AlfalfaGEDB | MsaG000533

M. sativa ssp. caerulea / MsaG000533

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141
PFAM: PF12165.11

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000533	XP_013465876.1	99.242	264	1	1	1	264	1	263	0.0	543

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000533	sp\|Q5XEM9\|ALFL5_ARATH	71.591	264	71	2	1	264	1	260	5.97e-123	353

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000533	tr\|A0A072VES1\|A0A072VES1_MEDTR	99.242	264	1	1	1	264	1	263	0.0	543

TFs/TRs:

Gene ID	Type	Classification
MsaG000533	TF	Alfin-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000533	MsaG001030	0.800075	2.854502e-48	3.866034e-46
MsaG000533	MsaG001092	0.832497	1.653963e-55	5.145037e-53
MsaG000533	MsaG001145	0.817828	4.690154e-52	9.746343e-50
MsaG000533	MsaG001192	0.810478	1.933505e-50	3.340656e-48
MsaG000533	MsaG002146	0.818875	2.724392e-52	5.816954e-50
MsaG000533	MsaG002175	0.803646	5.316428e-49	7.810841e-47
MsaG000533	MsaG002660	0.814474	2.613347e-51	4.985280e-49
MsaG000533	MsaG002691	0.815408	1.625625e-51	3.175120e-49
MsaG000533	MsaG002692	0.839077	3.621546e-57	1.373560e-54
MsaG000533	MsaG002727	0.825686	7.276614e-54	1.865408e-51
MsaG000533	MsaG002906	0.835594	2.795858e-56	9.533148e-54
MsaG000533	MsaG003000	0.822650	3.727898e-53	8.797681e-51
MsaG000533	MsaG003310	0.837404	9.723963e-57	3.501980e-54
MsaG000533	MsaG003332	0.805115	2.636077e-49	4.007142e-47
MsaG000533	MsaG003789	0.800272	2.603864e-48	3.542222e-46
MsaG000533	MsaG003882	0.819417	2.053338e-52	4.447150e-50
MsaG000533	MsaG004298	0.810369	2.040641e-50	3.516397e-48
MsaG000533	MsaG004329	0.819992	1.519927e-52	3.342219e-50
MsaG000533	MsaG004400	0.813953	3.400991e-51	6.403793e-49
MsaG000533	MsaG004524	0.805608	2.080027e-49	3.198384e-47
MsaG000533	MsaG005138	0.803929	4.646848e-49	6.872096e-47
MsaG000533	MsaG005235	0.802484	9.223065e-49	1.319273e-46
MsaG000533	MsaG005275	0.812906	5.764369e-51	1.057264e-48
MsaG000533	MsaG005278	0.819003	2.549273e-52	5.461415e-50
MsaG000533	MsaG005922	0.805771	1.923726e-49	2.969296e-47
MsaG000533	MsaG006230	0.806991	1.066727e-49	1.694633e-47
MsaG000533	MsaG006394	0.811438	1.200993e-50	2.124252e-48
MsaG000533	MsaG006438	0.806160	1.594865e-49	2.484414e-47
MsaG000533	MsaG007099	0.802887	7.622115e-49	1.100370e-46
MsaG000533	MsaG007146	0.801470	1.486826e-48	2.078125e-46
MsaG000533	MsaG007181	0.804841	3.006014e-49	4.540592e-47
MsaG000533	MsaG007576	0.812275	7.909777e-51	1.428115e-48
MsaG000533	MsaG007580	0.834563	5.073040e-56	1.677213e-53
MsaG000533	MsaG007700	0.834756	4.539372e-56	1.509553e-53
MsaG000533	MsaG008033	0.825310	8.923674e-54	2.263956e-51
MsaG000533	MsaG008107	0.816072	1.158119e-51	2.300370e-49
MsaG000533	MsaG008422	0.815309	1.709866e-51	3.331267e-49
MsaG000533	MsaG008888	0.822939	3.194758e-53	7.598678e-51
MsaG000533	MsaG008877	0.824232	1.597066e-53	3.934085e-51
MsaG000533	MsaG009178	0.813437	4.413745e-51	8.203723e-49
MsaG000533	MsaG009852	0.830461	5.215752e-55	1.529417e-52
MsaG000533	MsaG009926	0.809592	2.994850e-50	5.064287e-48
MsaG000533	MsaG010126	0.809036	3.935008e-50	6.565506e-48
MsaG000533	MsaG010310	0.816528	9.166746e-52	1.842116e-49
MsaG000533	MsaG010943	0.800445	2.401833e-48	3.280313e-46
MsaG000533	MsaG011213	0.814517	2.557014e-51	4.883012e-49
MsaG000533	MsaG011525	0.833485	9.419040e-56	3.016029e-53
MsaG000533	MsaG011559	0.828114	1.924118e-54	5.278731e-52
MsaG000533	MsaG011581	0.803550	5.563556e-49	8.156153e-47
MsaG000533	MsaG012130	0.805115	2.635896e-49	4.006883e-47
MsaG000533	MsaG012268	0.804368	3.768462e-49	5.630208e-47
MsaG000533	MsaG012354	0.815963	1.224250e-51	2.425089e-49
MsaG000533	MsaG012610	0.822290	4.516568e-53	1.055596e-50
MsaG000533	MsaG013310	0.817717	4.967489e-52	1.029274e-49
MsaG000533	MsaG013429	0.823619	2.221018e-53	5.381043e-51
MsaG000533	MsaG014039	0.810327	2.083714e-50	3.586908e-48
MsaG000533	MsaG014042	0.830506	5.086470e-55	1.493422e-52
MsaG000533	MsaG014094	0.846138	4.932124e-59	2.346641e-56
MsaG000533	MsaG014242	0.804735	3.163223e-49	4.766194e-47
MsaG000533	MsaG014314	0.815363	1.663584e-51	3.245510e-49
MsaG000533	MsaG015195	0.825121	9.883507e-54	2.494486e-51
MsaG000533	MsaG015237	0.824436	1.430767e-53	3.544159e-51
MsaG000533	MsaG015930	0.802487	9.209418e-49	1.317403e-46
MsaG000533	MsaG016372	0.822314	4.458198e-53	1.042670e-50
MsaG000533	MsaG016503	0.805717	1.974617e-49	3.043974e-47
MsaG000533	MsaG017153	0.827018	3.515791e-54	9.353055e-52
MsaG000533	MsaG017713	0.810161	2.261544e-50	3.877230e-48
MsaG000533	MsaG017731	0.813011	5.467648e-51	1.005496e-48
MsaG000533	MsaG017931	0.822777	3.484711e-53	8.252240e-51
MsaG000533	MsaG017973	0.807317	9.107007e-50	1.457943e-47
MsaG000533	MsaG018355	0.826760	4.051232e-54	1.070033e-51
MsaG000533	MsaG018466	0.810803	1.646001e-50	2.866521e-48
MsaG000533	MsaG018431	0.805153	2.588159e-49	3.937879e-47
MsaG000533	MsaG018613	0.819260	2.229451e-52	4.808724e-50
MsaG000533	MsaG018680	0.808947	4.110860e-50	6.844226e-48
MsaG000533	MsaG018780	0.804700	3.215918e-49	4.841625e-47
MsaG000533	MsaG019176	0.803361	6.086331e-49	8.883471e-47
MsaG000533	MsaG019225	0.826949	3.652556e-54	9.698473e-52
MsaG000533	MsaG019479	0.817786	4.794949e-52	9.952915e-50
MsaG000533	MsaG019716	0.803022	7.149202e-49	1.035324e-46
MsaG000533	MsaG019719	0.804796	3.072140e-49	4.635439e-47
MsaG000533	MsaG019923	0.812183	8.280480e-51	1.491671e-48
MsaG000533	MsaG020267	0.812539	6.928187e-51	1.259204e-48
MsaG000533	MsaG020697	0.825681	7.295264e-54	1.869917e-51
MsaG000533	MsaG021293	0.812797	6.089068e-51	1.113777e-48
MsaG000533	MsaG021484	0.807545	8.153806e-50	1.312473e-47
MsaG000533	MsaG021783	0.810293	2.119217e-50	3.644928e-48
MsaG000533	MsaG021835	0.800853	1.985071e-48	2.736099e-46
MsaG000533	MsaG021846	0.836603	1.554373e-56	5.463031e-54
MsaG000533	MsaG022048	0.819430	2.039582e-52	4.418857e-50
MsaG000533	MsaG022080	0.840684	1.388035e-57	5.536092e-55
MsaG000533	MsaG022579	0.809552	3.054199e-50	5.159677e-48
MsaG000533	MsaG022609	0.835727	2.588768e-56	8.861938e-54
MsaG000533	MsaG023230	0.810629	1.794498e-50	3.111820e-48
MsaG000533	MsaG023612	0.810690	1.741160e-50	3.023769e-48
MsaG000533	MsaG023703	0.808935	4.134363e-50	6.881373e-48
MsaG000533	MsaG023823	0.812504	7.049894e-51	1.280222e-48
MsaG000533	MsaG024095	0.817023	7.108687e-52	1.446896e-49
MsaG000533	MsaG024454	0.810727	1.709374e-50	2.971278e-48
MsaG000533	MsaG024535	0.838980	3.837502e-57	1.451059e-54
MsaG000533	MsaG024752	0.806332	1.467733e-49	2.295761e-47
MsaG000533	MsaG024829	0.804465	3.597879e-49	5.387308e-47
MsaG000533	MsaG024918	0.803388	6.010205e-49	8.777786e-47
MsaG000533	MsaG025330	0.814463	2.627237e-51	5.010503e-49
MsaG000533	MsaG025331	0.811475	1.179009e-50	2.087300e-48
MsaG000533	MsaG025448	0.814084	3.183949e-51	6.014633e-49
MsaG000533	MsaG025675	0.820967	9.101056e-53	2.053617e-50
MsaG000533	MsaG025685	0.822249	4.615807e-53	1.077601e-50
MsaG000533	MsaG026332	0.805215	2.512842e-49	3.828717e-47
MsaG000533	MsaG026614	0.800052	2.884693e-48	3.904970e-46
MsaG000533	MsaG026901	0.808386	5.409171e-50	8.884671e-48
MsaG000533	MsaG027581	0.814271	2.896209e-51	5.496908e-49
MsaG000533	MsaG027589	0.801008	1.846512e-48	2.553996e-46
MsaG000533	MsaG027597	0.800709	2.122955e-48	2.916824e-46
MsaG000533	MsaG027690	0.807620	7.858937e-50	1.267302e-47
MsaG000533	MsaG027759	0.811631	1.090851e-50	1.938592e-48
MsaG000533	MsaG028303	0.805112	2.639953e-49	4.012724e-47
MsaG000533	MsaG028308	0.801795	1.275794e-48	1.796435e-46
MsaG000533	MsaG028583	0.811044	1.460565e-50	2.558610e-48
MsaG000533	MsaG028630	0.803423	5.912000e-49	8.641090e-47
MsaG000533	MsaG029311	0.810932	1.543849e-50	2.697064e-48
MsaG000533	MsaG029894	0.813852	3.579211e-51	6.722339e-49
MsaG000533	MsaG030098	0.806310	1.483440e-49	2.319134e-47
MsaG000533	MsaG030194	0.811156	1.381312e-50	2.426444e-48
MsaG000533	MsaG030222	0.801813	1.264986e-48	1.781955e-46
MsaG000533	MsaG030462	0.800414	2.436898e-48	3.325867e-46
MsaG000533	MsaG030479	0.823633	2.203930e-53	5.341670e-51
MsaG000533	MsaG030474	0.810569	1.848679e-50	3.201095e-48
MsaG000533	MsaG031139	0.811425	1.208738e-50	2.137292e-48
MsaG000533	MsaG031665	0.801555	1.428467e-48	2.000422e-46
MsaG000533	MsaG032340	0.830106	6.364534e-55	1.847534e-52
MsaG000533	MsaG033732	0.804645	3.301983e-49	4.964791e-47
MsaG000533	MsaG033851	0.800913	1.930002e-48	2.663749e-46
MsaG000533	MsaG033872	0.820344	1.263108e-52	2.803610e-50
MsaG000533	MsaG033967	0.822582	3.865710e-53	9.106297e-51
MsaG000533	MsaG034005	0.803421	5.916464e-49	8.647209e-47
MsaG000533	MsaG034644	0.807663	7.697235e-50	1.242502e-47
MsaG000533	MsaG035181	0.817112	6.787970e-52	1.384815e-49
MsaG000533	MsaG035496	0.808481	5.165458e-50	8.503900e-48
MsaG000533	MsaG035823	0.831938	2.270624e-55	6.949824e-53
MsaG000533	MsaG036140	0.803433	5.883545e-49	8.601579e-47
MsaG000533	MsaG036300	0.806907	1.111192e-49	1.761732e-47
MsaG000533	MsaG037804	0.803497	5.705329e-49	8.353460e-47
MsaG000533	MsaG038012	0.829945	6.961021e-55	2.011482e-52
MsaG000533	MsaG038168	0.806600	1.289499e-49	2.029813e-47
MsaG000533	MsaG038999	0.823489	2.381572e-53	5.749333e-51
MsaG000533	MsaG039397	0.800412	2.439783e-48	3.329613e-46
MsaG000533	MsaG039592	0.813387	4.525714e-51	8.401332e-49
MsaG000533	MsaG039607	0.801342	1.578808e-48	2.200334e-46
MsaG000533	MsaG039649	0.804370	3.764676e-49	5.624824e-47
MsaG000533	MsaG039773	0.810350	2.060287e-50	3.548613e-48
MsaG000533	MsaG039849	0.803697	5.188278e-49	7.631793e-47
MsaG000533	MsaG040487	0.820955	9.157700e-53	2.065726e-50
MsaG000533	MsaG040748	0.824146	1.673226e-53	4.111996e-51
MsaG000533	MsaG040950	0.818326	3.624714e-52	7.629392e-50
MsaG000533	MsaG041055	0.817595	5.292709e-52	1.093215e-49
MsaG000533	MsaG041066	0.804511	3.520389e-49	5.276870e-47
MsaG000533	MsaG041135	0.804391	3.727190e-49	5.571471e-47
MsaG000533	MsaG041354	0.812164	8.357414e-51	1.504806e-48
MsaG000533	MsaG041434	0.826435	4.837289e-54	1.266233e-51
MsaG000533	MsaG041495	0.800627	2.205960e-48	3.025235e-46
MsaG000533	MsaG041937	0.845390	7.853111e-59	3.645140e-56
MsaG000533	MsaG042148	0.805108	2.644863e-49	4.019830e-47
MsaG000533	MsaG042353	0.805050	2.719384e-49	4.127687e-47
MsaG000533	MsaG042354	0.818839	2.775494e-52	5.920620e-50
MsaG000533	MsaG042532	0.819527	1.938501e-52	4.210354e-50
MsaG000533	MsaG042571	0.802279	1.015831e-48	1.446229e-46
MsaG000533	MsaG042720	0.824675	1.258230e-53	3.137035e-51
MsaG000533	MsaG042799	0.807057	1.033296e-49	1.644063e-47
MsaG000533	MsaG042766	0.807955	6.676069e-50	1.085281e-47
MsaG000533	MsaG042932	0.802716	8.263271e-49	1.188254e-46
MsaG000533	MsaG043390	0.823556	2.297504e-53	5.556600e-51
MsaG000533	MsaG043499	0.813355	4.599011e-51	8.530327e-49
MsaG000533	MsaG044119	0.828556	1.507640e-54	4.187705e-52
MsaG000533	MsaG044189	0.802104	1.103372e-48	1.564531e-46
MsaG000533	MsaG044311	0.818884	2.711159e-52	5.790090e-50
MsaG000533	MsaG044313	0.813919	3.460256e-51	6.509816e-49
MsaG000533	MsaG044532	0.803709	5.158789e-49	7.590548e-47
MsaG000533	MsaG044576	0.804387	3.734127e-49	5.581354e-47
MsaG000533	MsaG044569	0.800019	2.930129e-48	3.963489e-46
MsaG000533	MsaG044709	0.813153	5.092351e-51	9.397690e-49
MsaG000533	MsaG045303	0.802716	8.263387e-49	1.188268e-46
MsaG000533	MsaG045314	0.804517	3.510309e-49	5.262486e-47
MsaG000533	MsaG045517	0.800514	2.326270e-48	3.181952e-46
MsaG000533	MsaG045958	0.804779	3.096617e-49	4.670620e-47
MsaG000533	MsaG046281	0.806007	1.716696e-49	2.664434e-47
MsaG000533	MsaG046598	0.830207	6.013839e-55	1.750784e-52
MsaG000533	MsaG046646	0.810528	1.886320e-50	3.263115e-48
MsaG000533	MsaG047166	0.832142	2.022109e-55	6.226239e-53
MsaG000533	MsaG003317	0.844395	1.452654e-58	6.525073e-56
MsaG000533	MsaG008314	0.804730	3.170837e-49	4.777070e-47
MsaG000533	MsaG009150	0.800469	2.375087e-48	3.245489e-46
MsaG000533	MsaG012533	0.811064	1.446109e-50	2.534528e-48
MsaG000533	MsaG013105	0.813835	3.610399e-51	6.778163e-49
MsaG000533	MsaG013256	0.807428	8.629460e-50	1.385184e-47
MsaG000533	MsaG016720	0.804340	3.820314e-49	5.703901e-47
MsaG000533	MsaG012254	0.804650	3.293085e-49	4.952095e-47
MsaG000533	MsaG011923	0.814057	3.228080e-51	6.093771e-49
MsaG000533	MsaG013067	0.821641	6.372350e-53	1.463772e-50
MsaG000533	MsaG020741	0.803538	5.596704e-49	8.202306e-47
MsaG000533	MsaG018949	0.815293	1.723616e-51	3.356710e-49
MsaG000533	MsaG018691	0.816079	1.153554e-51	2.291753e-49
MsaG000533	MsaG021117	0.803304	6.255090e-49	9.117523e-47
MsaG000533	MsaG020214	0.824642	1.280335e-53	3.189272e-51
MsaG000533	MsaG019703	0.807722	7.478131e-50	1.208888e-47
MsaG000533	MsaG024064	0.812468	7.180502e-51	1.302739e-48
MsaG000533	MsaG024920	0.829377	9.558120e-55	2.717170e-52
MsaG000533	MsaG029778	0.813730	3.806621e-51	7.127464e-49
MsaG000533	MsaG030695	0.803575	5.499617e-49	8.066715e-47
MsaG000533	MsaG034563	0.810241	2.173516e-50	3.733689e-48
MsaG000533	MsaG030882	0.829110	1.108368e-54	3.126986e-52
MsaG000533	MsaG030749	0.811289	1.293406e-50	2.279405e-48
MsaG000533	MsaG029962	0.831152	3.537735e-55	1.058202e-52
MsaG000533	MsaG031636	0.800765	2.069038e-48	2.846240e-46
MsaG000533	MsaG036708	0.805372	2.330700e-49	3.564078e-47
MsaG000533	MsaG038289	0.809652	2.906779e-50	4.922495e-48
MsaG000533	MsaG039944	0.812289	7.852404e-51	1.418249e-48
MsaG000533	MsaG037636	0.816795	7.989978e-52	1.616721e-49
MsaG000533	MsaG042682	0.840383	1.662581e-57	6.569028e-55
MsaG000533	MsaG044966	0.808559	4.971485e-50	8.199963e-48
MsaG000533	MsaG042249	0.804603	3.369163e-49	5.060834e-47
MsaG000533	MsaG047199	0.823093	2.942860e-53	7.028744e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000533	MtrunA17_Chr1g0150821	99.242	264	1	1	1	264	1	263	0.0	543
MsaG000533	MtrunA17_Chr8g0343441	78.378	259	45	3	8	264	7	256	1.90e-130	369
MsaG000533	MtrunA17_Chr2g0300241	74.809	262	49	3	5	264	7	253	3.98e-125	356
MsaG000533	MtrunA17_Chr4g0076771	70.588	255	64	3	10	263	10	254	2.95e-113	326
MsaG000533	MtrunA17_Chr2g0329821	72.441	254	60	3	11	263	6	250	5.75e-111	320
MsaG000533	MtrunA17_Chr4g0006381	62.500	256	77	4	9	264	6	242	4.22e-94	277
MsaG000533	MtrunA17_Chr7g0242511	62.500	256	77	6	9	264	6	242	1.67e-92	273

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000533	AT5G20510.1	71.591	264	71	2	1	264	1	260	6.07e-124	353
MsaG000533	AT3G42790.1	72.348	264	57	3	1	263	1	249	1.08e-122	350
MsaG000533	AT2G02470.1	70.196	255	69	3	10	264	9	256	9.23e-111	320
MsaG000533	AT2G02470.2	67.578	256	65	3	10	264	9	247	2.32e-109	316
MsaG000533	AT5G26210.1	78.077	260	49	1	4	263	3	254	2.14e-108	314
MsaG000533	AT1G14510.1	67.063	252	71	2	10	261	9	248	6.38e-107	310
MsaG000533	AT5G20510.2	71.364	220	59	2	45	264	4	219	4.27e-98	286
MsaG000533	AT5G05610.2	61.961	255	76	5	9	263	7	240	1.38e-97	286
MsaG000533	AT5G05610.1	61.961	255	76	5	9	263	7	240	1.38e-97	286
MsaG000533	AT3G11200.1	61.977	263	82	3	1	263	1	245	1.32e-96	283
MsaG000533	AT5G20510.3	77.914	163	36	0	6	168	6	168	1.47e-82	246
MsaG000533	AT3G11200.2	62.100	219	65	3	45	263	32	232	3.31e-80	241
MsaG000533	AT2G02470.3	79.333	150	30	1	10	159	9	157	3.11e-72	222

Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAAATCTTTGCCTTTA+TGG	0.094878	1:+6957131	MsaT000533.1:CDS
AGAAAAGGATTGGCTATCTT+TGG	0.280443	1:+6957256	MsaT000533.1:CDS
GCTATGCAGCTGACGAGTTC+TGG	0.291054	1:+6959018	MsaT000533.1:CDS
ACAATCTTTGAAGTTGTTAC+AGG	0.306235	1:+6958278	MsaT000533.1:CDS
CTTAGAGTTTGATTTGGATT+TGG	0.307586	1:-6958354	None:intergenic
TTTGAAGTTGTTACAGGGTC+TGG	0.380524	1:+6958284	MsaT000533.1:CDS
TTGATATGCTCAGCCCTTGC+CGG	0.382099	1:-6959095	None:intergenic
GCTTACCTTAGAGTTTGATT+TGG	0.384520	1:-6958360	None:intergenic
GTAACAACTTCAAAGATTGT+TGG	0.390377	1:-6958275	None:intergenic
CAAATCCAAATCAAACTCTA+AGG	0.411797	1:+6958355	MsaT000533.1:CDS
TTAATACCCAATGCTGGCTC+TGG	0.427895	1:-6957212	None:intergenic
TTGGATTTGACAAGGCTGAT+AGG	0.428891	1:+6957336	MsaT000533.1:CDS
GCTCGCTCGGAAATCCATAA+AGG	0.438097	1:-6957145	None:intergenic
GGTATTAACTTTGCTAGAGA+TGG	0.438852	1:+6957227	MsaT000533.1:CDS
TCAGGCGGCACTTCCTCAGC+TGG	0.444344	1:-6957185	None:intergenic
AATGCTGGCTCTGGAAGCTC+AGG	0.453734	1:-6957203	None:intergenic
ATCTGCATTGCCATTGCCAT+TGG	0.459684	1:-6958897	None:intergenic
GCTCTCTTGTTGCTGCAAGC+TGG	0.467608	1:-6959131	None:intergenic
TTCACCTCCCACTGCTCGCT+CGG	0.467752	1:-6957158	None:intergenic
TCGACAGTACGAGGGTTGTA+CGG	0.497527	1:-6955020	None:intergenic
GCTGCGACATATGTGAGAAA+TGG	0.501712	1:+6959045	MsaT000533.1:CDS
TGATGCTTGGTTGCTTTCTG+TGG	0.503077	1:+6957292	MsaT000533.1:CDS
TTCTACCAGCAGTGTGATCC+CGG	0.504757	1:+6955213	MsaT000533.1:CDS
ACAACAACCATGGACGTTGT+AGG	0.512436	1:+6954993	None:intergenic
ATGGAATGCAAGAAAAGGAT+TGG	0.512817	1:+6957246	MsaT000533.1:CDS
AAGTTGTTACAGGGTCTGGC+AGG	0.518216	1:+6958288	MsaT000533.1:CDS
AGAAGACCGACCGGTGGTGA+GGG	0.523124	1:-6955090	None:intergenic
TAGAGATGGAATGCAAGAAA+AGG	0.524287	1:+6957241	MsaT000533.1:CDS
GAGCTTCCAGAGCCAGCATT+GGG	0.524583	1:+6957206	MsaT000533.1:CDS
TTAATTAAAGCCCTCACCAC+CGG	0.530739	1:+6955080	MsaT000533.1:CDS
AAGACTTCTTCGACAGTACG+AGG	0.536014	1:-6955029	None:intergenic
TTGCAGTACACAGTGATGCT+TGG	0.538841	1:+6957279	MsaT000533.1:CDS
GAAGTCTTTCGAGATTTCAA+AGG	0.539441	1:+6955044	MsaT000533.1:CDS
ACAGGGTCTGGCAGGAAACA+AGG	0.548267	1:+6958296	MsaT000533.1:CDS
AGGTGTGGACGAGGAAGATG+AGG	0.549480	1:+6958956	MsaT000533.1:CDS
TGCTAGGTTTGGATTTGACA+AGG	0.554851	1:+6957328	MsaT000533.1:CDS
CAATCTTTGAAGTTGTTACA+GGG	0.559430	1:+6958279	MsaT000533.1:CDS
CGGAGCACCTACAACGTCCA+TGG	0.562602	1:-6955000	None:intergenic
GCAAAGTTAATACCCAATGC+TGG	0.563035	1:-6957218	None:intergenic
GCAGTCAAAGGATGAGGTTG+AGG	0.565823	1:+6958920	MsaT000533.1:CDS
ATATGTGAGAAATGGTTTCA+CGG	0.569510	1:+6959053	MsaT000533.1:CDS
GCAGATGCAGTCAAAGGATG+AGG	0.569670	1:+6958914	MsaT000533.1:CDS
TGAGCTTCCAGAGCCAGCAT+TGG	0.570153	1:+6957205	MsaT000533.1:CDS
CGTGAAGATTACTCCGGCAA+GGG	0.576974	1:+6959082	MsaT000533.1:CDS
TGGATTTCCGAGCGAGCAGT+GGG	0.579516	1:+6957151	MsaT000533.1:CDS
GGCAATGCAGATGCAGTCAA+AGG	0.579948	1:+6958908	MsaT000533.1:CDS
GCTGGCTCTGGAAGCTCAGG+CGG	0.581111	1:-6957200	None:intergenic
GCGTGAAGATTACTCCGGCA+AGG	0.589663	1:+6959081	MsaT000533.1:CDS
GAGAAGACCGACCGGTGGTG+AGG	0.592144	1:-6955091	None:intergenic
ATGGATTTCCGAGCGAGCAG+TGG	0.601477	1:+6957150	MsaT000533.1:CDS
TATTACCGGGATCACACTGC+TGG	0.607631	1:-6955218	None:intergenic
GAGACTTTGTGTGGGGCATG+TGG	0.613065	1:+6958990	MsaT000533.1:CDS
AACACGGAGAGACTTTGTGT+GGG	0.622939	1:+6958982	MsaT000533.1:CDS
GGATGAAGATGGTGTAGGTG+TGG	0.626967	1:+6958941	MsaT000533.1:CDS
AGATGGTGTAGGTGTGGACG+AGG	0.628142	1:+6958947	MsaT000533.1:CDS
GAACACGGAGAGACTTTGTG+TGG	0.630911	1:+6958981	MsaT000533.1:CDS
GGAGGTGAATCTGCCAGCTG+AGG	0.634327	1:+6957172	MsaT000533.1:CDS
AGACTTCTTCGACAGTACGA+GGG	0.643030	1:-6955028	None:intergenic
GATGAGGTTGAGGATGAAGA+TGG	0.646194	1:+6958930	MsaT000533.1:CDS
GAGGAAGATGAGGAAGAACA+CGG	0.666720	1:+6958966	MsaT000533.1:CDS
ATTTCCGAGCGAGCAGTGGG+AGG	0.670558	1:+6957154	MsaT000533.1:CDS
GTTGAGGATGAAGATGGTGT+AGG	0.671969	1:+6958936	MsaT000533.1:CDS
GTCTGGCAGGAAACAAGGAA+AGG	0.676618	1:+6958301	MsaT000533.1:CDS
ACACGGAGAGACTTTGTGTG+GGG	0.707279	1:+6958983	MsaT000533.1:CDS
AAAATGCGTGAAGATTACTC+CGG	0.732353	1:+6959076	MsaT000533.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	6955002	6959163	6955002	ID=MsaG000533
Chr1	mRNA	6955002	6959163	6955002	ID=MsaT000533.1;Parent=MsaG000533
Chr1	exon	6955002	6955101	6955002	ID=MsaT000533.1.exon1;Parent=MsaT000533.1
Chr1	CDS	6955002	6955101	6955002	ID=cds.MsaT000533.1;Parent=MsaT000533.1
Chr1	exon	6955202	6955234	6955202	ID=MsaT000533.1.exon2;Parent=MsaT000533.1
Chr1	CDS	6955202	6955234	6955202	ID=cds.MsaT000533.1;Parent=MsaT000533.1
Chr1	exon	6957129	6957357	6957129	ID=MsaT000533.1.exon3;Parent=MsaT000533.1
Chr1	CDS	6957129	6957357	6957129	ID=cds.MsaT000533.1;Parent=MsaT000533.1
Chr1	exon	6958244	6958376	6958244	ID=MsaT000533.1.exon4;Parent=MsaT000533.1
Chr1	CDS	6958244	6958376	6958244	ID=cds.MsaT000533.1;Parent=MsaT000533.1
Chr1	exon	6958864	6959163	6958864	ID=MsaT000533.1.exon5;Parent=MsaT000533.1
Chr1	CDS	6958864	6959163	6958864	ID=cds.MsaT000533.1;Parent=MsaT000533.1

Gene Sequence

>MsaT000533.1

ATGGACGTTGTAGGTGCTCCGTACAACCCTCGTACTGTCGAAGAAGTCTTTCGAGATTTCAAAGGTCGCAGAGCTGCTTTAATTAAAGCCCTCACCACCGATGTCGATGTATTCTACCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCGAGCGAGCAGTGGGAGGTGAATCTGCCAGCTGAGGAAGTGCCGCCTGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCTAGAGATGGAATGCAAGAAAAGGATTGGCTATCTTTGGTTGCAGTACACAGTGATGCTTGGTTGCTTTCTGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAAGCGACTGTTTAATATGATCAATGATCTTCCAACAATCTTTGAAGTTGTTACAGGGTCTGGCAGGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATAATAGCAGTACCAAATCCAAATCAAACTCTAAGCGAAGTTCTGAACCTCAGCCAAAGTTTTCAAAACCAATGGCAATGGCAATGCAGATGCAGTCAAAGGATGAGGTTGAGGATGAAGATGGTGTAGGTGTGGACGAGGAAGATGAGGAAGAACACGGAGAGACTTTGTGTGGGGCATGTGGAGACAGCTATGCAGCTGACGAGTTCTGGATTTGCTGCGACATATGTGAGAAATGGTTTCACGGAAAATGCGTGAAGATTACTCCGGCAAGGGCTGAGCATATCAAACAGTACAAATGTCCAGCTTGCAGCAACAAGAGAGCTCGCCCTTGA

Protein sequence

>MsaT000533.1

MDVVGAPYNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGSGRKQGKEKSSVSNNSSTKSKSNSKRSSEPQPKFSKPMAMAMQMQSKDEVEDEDGVGVDEEDEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSNKRARP*