AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG000534


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000534 MtrunA17_Chr1g0150821 78.824 85 14 1 1 81 179 263 5.36e-37 124
MsaG000534 MtrunA17_Chr8g0343441 88.333 60 6 1 23 81 197 256 2.93e-34 117
MsaG000534 MtrunA17_Chr2g0329821 87.931 58 6 1 24 80 193 250 2.18e-31 109
MsaG000534 MtrunA17_Chr2g0300241 83.929 56 7 1 28 81 198 253 9.56e-30 105
MsaG000534 MtrunA17_Chr4g0006381 67.089 79 25 1 4 81 164 242 6.33e-29 103
MsaG000534 MtrunA17_Chr4g0076771 81.132 53 10 0 28 80 202 254 2.58e-28 102
MsaG000534 MtrunA17_Chr7g0242511 75.000 56 14 0 26 81 187 242 5.03e-27 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000534 AT5G20510.2 88.136 59 7 0 23 81 161 219 3.18e-36 121
MsaG000534 AT5G20510.1 88.136 59 7 0 23 81 202 260 6.29e-36 122
MsaG000534 AT3G42790.1 91.379 58 5 0 23 80 192 249 2.35e-35 120
MsaG000534 AT5G26210.1 89.091 55 6 0 26 80 200 254 1.35e-31 110
MsaG000534 AT2G02470.1 83.636 55 9 0 27 81 202 256 7.28e-31 108
MsaG000534 AT2G02470.2 83.636 55 9 0 27 81 193 247 8.00e-31 108
MsaG000534 AT5G05610.2 59.740 77 31 0 4 80 164 240 2.13e-28 102
MsaG000534 AT5G05610.1 59.740 77 31 0 4 80 164 240 2.13e-28 102
MsaG000534 AT3G11200.1 68.966 58 18 0 23 80 188 245 2.13e-26 97.1
MsaG000534 AT3G11200.2 68.966 58 18 0 23 80 175 232 2.37e-26 96.7
MsaG000534 AT1G14510.1 75.000 52 13 0 27 78 197 248 8.70e-26 95.9

Find 21 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATGCAGCTGATGAGTTC+TGG 0.348702 1:+6968905 MsaT000534.1:CDS
TTGATATGCTCAGCCCTTGC+CGG 0.382099 1:-6968982 None:intergenic
GCAGTGACATTTGCGAGAAA+TGG 0.391588 1:+6968932 MsaT000534.1:CDS
ATTTGCGAGAAATGGTTTCA+TGG 0.414893 1:+6968940 MsaT000534.1:CDS
GTCAAAGGACGAGGAGGTTG+AGG 0.459920 1:+6968822 MsaT000534.1:CDS
GCTCTCTTGTTGCTGCAAGC+TGG 0.467608 1:-6969018 None:intergenic
CGTGAAGATTACTCCGGCAA+GGG 0.576974 1:+6968969 MsaT000534.1:CDS
GGTTGAGGATGGTGTAGGTG+TGG 0.578977 1:+6968837 MsaT000534.1:CDS
GAGGAGGTTGAGGATGGTGT+AGG 0.579309 1:+6968832 MsaT000534.1:CDS
GCGTGAAGATTACTCCGGCA+AGG 0.589663 1:+6968968 MsaT000534.1:CDS
GGCAATGCAAATGAAGTCAA+AGG 0.599376 1:+6968807 MsaT000534.1:CDS
GCAAATGAAGTCAAAGGACG+AGG 0.610740 1:+6968813 MsaT000534.1:CDS
GAGACTTTGTGTGGGGCATG+TGG 0.613065 1:+6968877 MsaT000534.1:CDS
AAGGACGAGGAGGTTGAGGA+TGG 0.620188 1:+6968826 MsaT000534.1:CDS
AACACGGAGAGACTTTGTGT+GGG 0.622939 1:+6968869 MsaT000534.1:CDS
GGATGGTGTAGGTGTGGACG+AGG 0.628142 1:+6968843 MsaT000534.1:CDS
GAACACGGAGAGACTTTGTG+TGG 0.630911 1:+6968868 MsaT000534.1:CDS
ACACGGAGAGACTTTGTGTG+GGG 0.707279 1:+6968870 MsaT000534.1:CDS
AATGAAGTCAAAGGACGAGG+AGG 0.714948 1:+6968816 MsaT000534.1:CDS
AAAATGCGTGAAGATTACTC+CGG 0.724223 1:+6968963 MsaT000534.1:CDS
GGTGTGGACGAGGAAGAACA+CGG 0.729144 1:+6968853 MsaT000534.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 6968805 6969050 6968805 ID=MsaG000534
Chr1 mRNA 6968805 6969050 6968805 ID=MsaT000534.1;Parent=MsaG000534
Chr1 exon 6968805 6969050 6968805 ID=MsaT000534.1.exon1;Parent=MsaT000534.1
Chr1 CDS 6968805 6969050 6968805 ID=cds.MsaT000534.1;Parent=MsaT000534.1
Gene Sequence

>MsaT000534.1

ATGGCAATGCAAATGAAGTCAAAGGACGAGGAGGTTGAGGATGGTGTAGGTGTGGACGAGGAAGAACACGGAGAGACTTTGTGTGGGGCATGTGGAGACAGCTATGCAGCTGATGAGTTCTGGATTTGCAGTGACATTTGCGAGAAATGGTTTCATGGAAAATGCGTGAAGATTACTCCGGCAAGGGCTGAGCATATCAAACAGTACAAATGTCCAGCTTGCAGCAACAAGAGAGCTCGCCCTTGA

Protein sequence

>MsaT000534.1

MAMQMKSKDEEVEDGVGVDEEEHGETLCGACGDSYAADEFWICSDICEKWFHGKCVKITPARAEHIKQYKCPACSNKRARP*