AlfalfaGEDB | MsaG000537

M. sativa ssp. caerulea / MsaG000537

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000537	XP_003588914.1	97.521	121	3	0	1	121	1	121	1.51e-81	246

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000537	sp\|Q8VWQ5\|WRK50_ARATH	78.788	33	7	0	89	121	100	132	2.54e-13	65.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000537	tr\|G7I8Z5\|G7I8Z5_MEDTR	97.521	121	3	0	1	121	1	121	7.23e-82	246

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000537	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000032	MsaG000537	0.808795	4.429536e-50	7.347720e-48
MsaG000069	MsaG000537	0.838021	6.764175e-57	2.482470e-54
MsaG000138	MsaG000537	0.864717	1.985610e-64	1.854862e-61
MsaG000202	MsaG000537	0.834274	5.990460e-56	1.963448e-53
MsaG000253	MsaG000537	0.828304	1.732312e-54	4.777836e-52
MsaG000297	MsaG000537	0.803509	5.673250e-49	8.308877e-47
MsaG000536	MsaG000537	0.849113	7.555440e-60	3.973211e-57
MsaG000537	MsaG000621	0.801722	1.320344e-48	1.856071e-46
MsaG000537	MsaG000705	0.874446	1.386594e-67	1.946516e-64
MsaG000537	MsaG000715	0.810978	1.508864e-50	2.638934e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000537	MtrunA17_Chr1g0150801	97.521	121	3	0	1	121	1	121	1.39e-85	246
MsaG000537	MtrunA17_Chr8g0383251	41.176	102	50	3	25	120	29	126	2.22e-13	63.5
MsaG000537	MtrunA17_Chr3g0129321	37.984	129	66	4	5	121	11	137	3.92e-13	63.2
MsaG000537	MtrunA17_Chr7g0270191	63.415	41	15	0	81	121	124	164	3.48e-11	58.5
MsaG000537	MtrunA17_Chr1g0194481	50.943	53	26	0	69	121	125	177	5.47e-11	58.2
MsaG000537	MtrunA17_Chr4g0004911	64.103	39	13	1	84	121	317	355	9.78e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000537	AT5G26170.1	78.788	33	7	0	89	121	100	132	2.59e-14	65.9
MsaG000537	AT2G47260.1	61.905	42	16	0	80	121	152	193	2.09e-11	59.7
MsaG000537	AT5G07100.2	60.870	46	15	2	82	124	118	163	4.18e-11	58.2
MsaG000537	AT5G07100.4	60.870	46	15	2	82	124	118	163	4.18e-11	58.2
MsaG000537	AT5G07100.5	60.870	46	15	2	82	124	118	163	4.18e-11	58.2
MsaG000537	AT5G07100.3	60.870	46	15	2	82	124	118	163	4.18e-11	58.2
MsaG000537	AT3G01970.1	69.697	33	10	0	89	121	52	84	4.83e-11	57.0
MsaG000537	AT5G64810.1	33.913	115	64	4	18	120	14	128	6.03e-11	57.4
MsaG000537	AT5G07100.1	65.116	43	12	2	82	121	211	253	7.07e-11	58.2

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Find 24 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAAGACTCAGTGGT+TGG	0.518786	1:-7002919	None:intergenic
AAGTAGTCAGAGAGTTCAAA+TGG	0.505113	1:-7002862	None:intergenic
AATATATATACCTTGGATTA+GGG	0.308746	1:-7003282	None:intergenic
ACTAATAATATGAATATGAG+TGG	0.553406	1:+7003139	MsaT000537.1:CDS
AGAGTTCAAATGGCCACTGC+TGG	0.523946	1:-7002852	None:intergenic
ATATGAGTGGAAACGATAAT+TGG	0.349180	1:+7003152	MsaT000537.1:CDS
CAAGCCAACGAAGTAGCAGG+TGG	0.667226	1:+7002943	MsaT000537.1:CDS
CAATATATATACCTTGGATT+AGG	0.247704	1:-7003283	None:intergenic
CAGGTGGCAGCTACATTGAA+GGG	0.604012	1:+7002959	MsaT000537.1:CDS
CTGATTGAAATACTTGATGA+TGG	0.529008	1:+7003217	MsaT000537.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	7002793	7013206	7002793	ID=MsaG000537
Chr1	mRNA	7002793	7013206	7002793	ID=MsaT000537.1;Parent=MsaG000537
Chr1	exon	7002793	7002997	7002793	ID=MsaT000537.1.exon1;Parent=MsaT000537.1
Chr1	CDS	7002793	7002997	7002793	ID=cds.MsaT000537.1;Parent=MsaT000537.1
Chr1	exon	7003134	7003293	7003134	ID=MsaT000537.1.exon2;Parent=MsaT000537.1
Chr1	CDS	7003134	7003293	7003134	ID=cds.MsaT000537.1;Parent=MsaT000537.1
Chr1	exon	7013197	7013206	7013197	ID=MsaT000537.1.exon3;Parent=MsaT000537.1
Chr1	CDS	7013197	7013206	7013197	ID=cds.MsaT000537.1;Parent=MsaT000537.1

Gene Sequence	>MsaT000537.1 ATGACAGAGAAAAATCCAAGAACAGCAAATTCATCATCACCTGAAAGTGATTTTAGCAACCAGCAGTGGCCATTTGAACTCTCTGACTACTTGAGTTTCGATGACAATGAATGGCTACAAAACAATCCAACCACTGAGTCTTTAGTTTTTCAAGCCAACGAAGTAGCAGGTGGCAGCTACATTGAAGGGTCTTCTAGTTCAATCAGAGATACTAATAATATGAATATGAGTGGAAACGATAATTGGAAGAAGGAAATTAAGGAGAGAGTTGCATTCAAAACAAAGTCACTGATTGAAATACTTGATGATGGGTACAGATGGAGGAAGTATGGAAAGAAAATGGTTAAGAACAGCCCTAATCCAAGCTTGTTTTAA
Protein sequence	>MsaT000537.1 MTEKNPRTANSSSPESDFSNQQWPFELSDYLSFDDNEWLQNNPTTESLVFQANEVAGGSYIEGSSSSIRDTNNMNMSGNDNWKKEIKERVAFKTKSLIEILDDGYRWRKYGKKMVKNSPNPSLF*