AlfalfaGEDB | MsaG000546

M. sativa ssp. caerulea / MsaG000546

KEGG: K14686
GO: GO:0000041 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0012505 GO:0015680 GO:0016020 GO:0030001 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097305 GO:0097708 GO:0098588 GO:0098805 GO:1901700
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000546	XP_003588901.1	95.105	143	6	1	146	288	1	142	3.96e-93	281

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000546	sp\|Q93VM8\|COPT5_ARATH	55.102	147	61	3	146	288	1	146	3.56e-47	157

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000546	tr\|G7I8Y2\|G7I8Y2_MEDTR	95.105	143	6	1	146	288	1	142	1.89e-93	281

TFs/TRs:

Gene ID	Type	Classification
MsaG000546	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000117	MsaG000546	0.854503	2.274482e-61	1.443605e-58
MsaG000128	MsaG000546	0.809903	2.568940e-50	4.376745e-48
MsaG000280	MsaG000546	0.830174	6.126465e-55	1.781883e-52
MsaG000514	MsaG000546	0.831536	2.850232e-55	8.621629e-53
MsaG000546	MsaG000550	0.808832	4.348373e-50	7.219709e-48
MsaG000546	MsaG000759	0.826160	5.620798e-54	1.460074e-51
MsaG000546	MsaG000760	0.803956	4.586581e-49	6.787281e-47
MsaG000546	MsaG000762	0.819992	1.519563e-52	3.341449e-50
MsaG000546	MsaG000942	0.822707	3.616760e-53	8.548607e-51
MsaG000546	MsaG001057	0.851134	2.064660e-60	1.163624e-57
MsaG000546	MsaG001809	0.802595	8.751886e-49	1.255060e-46
MsaG000546	MsaG002021	0.816458	9.503588e-52	1.906351e-49
MsaG000546	MsaG003161	0.846298	4.462578e-59	2.134605e-56
MsaG000546	MsaG003964	0.830499	5.104840e-55	1.498529e-52
MsaG000546	MsaG004436	0.814590	2.464080e-51	4.714070e-49
MsaG000546	MsaG004544	0.826491	4.692332e-54	1.230172e-51
MsaG000546	MsaG004744	0.846837	3.184966e-59	1.551126e-56
MsaG000546	MsaG004745	0.803777	4.994226e-49	7.359833e-47
MsaG000546	MsaG004937	0.801988	1.165292e-48	1.648001e-46
MsaG000546	MsaG004938	0.841502	8.479095e-58	3.470542e-55
MsaG000546	MsaG004990	0.814453	2.640909e-51	5.035236e-49
MsaG000546	MsaG005104	0.805792	1.904165e-49	2.940555e-47
MsaG000546	MsaG005289	0.838475	5.175521e-57	1.926290e-54
MsaG000546	MsaG005584	0.814499	2.580059e-51	4.924854e-49
MsaG000546	MsaG005812	0.841850	6.872777e-58	2.844451e-55
MsaG000546	MsaG006304	0.812536	6.940240e-51	1.261270e-48
MsaG000546	MsaG006736	0.808988	4.028468e-50	6.713645e-48
MsaG000546	MsaG006942	0.839378	3.029055e-57	1.159545e-54
MsaG000546	MsaG006956	0.802115	1.097224e-48	1.556235e-46
MsaG000546	MsaG007114	0.810640	1.784498e-50	3.095369e-48
MsaG000546	MsaG007541	0.800396	2.457753e-48	3.352901e-46
MsaG000546	MsaG007652	0.826303	5.198902e-54	1.355824e-51
MsaG000546	MsaG007655	0.817922	4.469308e-52	9.309647e-50
MsaG000546	MsaG008166	0.809782	2.727338e-50	4.633096e-48
MsaG000546	MsaG008368	0.818955	2.613137e-52	5.591310e-50
MsaG000546	MsaG008915	0.825892	6.505059e-54	1.677246e-51
MsaG000546	MsaG009179	0.855165	1.465087e-61	9.521106e-59
MsaG000546	MsaG009472	0.801978	1.170914e-48	1.655592e-46
MsaG000546	MsaG009781	0.828297	1.739262e-54	4.795939e-52
MsaG000546	MsaG010596	0.824248	1.584045e-53	3.903612e-51
MsaG000546	MsaG010619	0.809922	2.544775e-50	4.337539e-48
MsaG000546	MsaG011468	0.822896	3.269683e-53	7.767730e-51
MsaG000546	MsaG011951	0.816992	7.223031e-52	1.468969e-49
MsaG000546	MsaG011997	0.801380	1.550948e-48	2.163333e-46
MsaG000546	MsaG012047	0.813862	3.562113e-51	6.691745e-49
MsaG000546	MsaG012206	0.804170	4.143128e-49	6.161469e-47
MsaG000546	MsaG012248	0.823997	1.812498e-53	4.436354e-51
MsaG000546	MsaG013245	0.818903	2.685408e-52	5.737862e-50
MsaG000546	MsaG014725	0.824990	1.061158e-53	2.668618e-51
MsaG000546	MsaG015294	0.802969	7.331480e-49	1.060403e-46
MsaG000546	MsaG016571	0.817026	7.095918e-52	1.444433e-49
MsaG000546	MsaG016826	0.820848	9.689560e-53	2.179339e-50
MsaG000546	MsaG017256	0.815497	1.553464e-51	3.040895e-49
MsaG000546	MsaG017340	0.828592	1.477311e-54	4.107683e-52
MsaG000546	MsaG017354	0.826608	4.400447e-54	1.157370e-51
MsaG000546	MsaG017464	0.816359	9.995333e-52	2.000001e-49
MsaG000546	MsaG017589	0.830392	5.421249e-55	1.586673e-52
MsaG000546	MsaG017737	0.814273	2.893199e-51	5.491431e-49
MsaG000546	MsaG017779	0.841675	7.640183e-58	3.144353e-55
MsaG000546	MsaG018263	0.805123	2.626592e-49	3.993420e-47
MsaG000546	MsaG018465	0.831201	3.442191e-55	1.031035e-52
MsaG000546	MsaG018417	0.823148	2.858279e-53	6.836660e-51
MsaG000546	MsaG018671	0.812035	8.915968e-51	1.600312e-48
MsaG000546	MsaG019206	0.810505	1.908300e-50	3.299187e-48
MsaG000546	MsaG019422	0.819661	1.807097e-52	3.938706e-50
MsaG000546	MsaG020296	0.811970	9.210832e-51	1.650620e-48
MsaG000546	MsaG020402	0.820475	1.179228e-52	2.626383e-50
MsaG000546	MsaG020566	0.804704	3.210371e-49	4.833655e-47
MsaG000546	MsaG020784	0.803052	7.048672e-49	1.021468e-46
MsaG000546	MsaG020814	0.852980	6.206909e-61	3.732073e-58
MsaG000546	MsaG020888	0.807063	1.030276e-49	1.639478e-47
MsaG000546	MsaG022116	0.821846	5.717346e-53	1.320444e-50
MsaG000546	MsaG022227	0.817342	6.031050e-52	1.237646e-49
MsaG000546	MsaG022780	0.805632	2.056253e-49	3.163607e-47
MsaG000546	MsaG023153	0.823361	2.549908e-53	6.134673e-51
MsaG000546	MsaG023503	0.819388	2.084737e-52	4.511690e-50
MsaG000546	MsaG023609	0.855603	1.093588e-61	7.221248e-59
MsaG000546	MsaG023810	0.809817	2.679675e-50	4.556052e-48
MsaG000546	MsaG023941	0.801986	1.165993e-48	1.648955e-46
MsaG000546	MsaG023991	0.840358	1.687646e-57	6.662612e-55
MsaG000546	MsaG024271	0.817902	4.513858e-52	9.397657e-50
MsaG000546	MsaG025187	0.816498	9.306330e-52	1.868758e-49
MsaG000546	MsaG025958	0.829941	6.976761e-55	2.015784e-52
MsaG000546	MsaG027416	0.818045	4.191526e-52	8.758948e-50
MsaG000546	MsaG028488	0.836454	1.695806e-56	5.933690e-54
MsaG000546	MsaG028713	0.832540	1.614097e-55	5.027124e-53
MsaG000546	MsaG028862	0.846533	3.852890e-59	1.857370e-56
MsaG000546	MsaG028908	0.808201	5.921003e-50	9.682387e-48
MsaG000546	MsaG028990	0.822798	3.445937e-53	8.165066e-51
MsaG000546	MsaG029132	0.825687	7.269820e-54	1.863730e-51
MsaG000546	MsaG029328	0.814547	2.518872e-51	4.813767e-49
MsaG000546	MsaG029470	0.803657	5.287807e-49	7.770861e-47
MsaG000546	MsaG029600	0.833919	7.343810e-56	2.381725e-53
MsaG000546	MsaG029950	0.813696	3.873580e-51	7.246420e-49
MsaG000546	MsaG030267	0.834601	4.961974e-56	1.642417e-53
MsaG000546	MsaG030986	0.840225	1.827368e-57	7.183969e-55
MsaG000546	MsaG031393	0.823509	2.355300e-53	5.689122e-51
MsaG000546	MsaG031848	0.813757	3.755563e-51	7.036588e-49
MsaG000546	MsaG031880	0.827462	2.756414e-54	7.424586e-52
MsaG000546	MsaG031821	0.814073	3.202204e-51	6.047366e-49
MsaG000546	MsaG032332	0.814311	2.837600e-51	5.391060e-49
MsaG000546	MsaG033540	0.825726	7.119957e-54	1.827309e-51
MsaG000546	MsaG033519	0.812485	7.120178e-51	1.292325e-48
MsaG000546	MsaG033961	0.838731	4.445890e-57	1.668105e-54
MsaG000546	MsaG033989	0.820911	9.375007e-53	2.112207e-50
MsaG000546	MsaG034132	0.836136	2.041084e-56	7.073827e-54
MsaG000546	MsaG034149	0.814558	2.504317e-51	4.787261e-49
MsaG000546	MsaG034173	0.805061	2.704963e-49	4.106756e-47
MsaG000546	MsaG034177	0.820143	1.404034e-52	3.099818e-50
MsaG000546	MsaG034548	0.800069	2.862626e-48	3.876514e-46
MsaG000546	MsaG034861	0.808204	5.913621e-50	9.670909e-48
MsaG000546	MsaG035190	0.809375	3.331076e-50	5.603270e-48
MsaG000546	MsaG035236	0.815092	1.909374e-51	3.699440e-49
MsaG000546	MsaG035238	0.808817	4.381163e-50	7.271386e-48
MsaG000546	MsaG035660	0.802382	9.673909e-49	1.380562e-46
MsaG000546	MsaG037874	0.814328	2.813836e-51	5.348077e-49
MsaG000546	MsaG039946	0.811929	9.400743e-51	1.682996e-48
MsaG000546	MsaG039995	0.811537	1.143101e-50	2.026784e-48
MsaG000546	MsaG040747	0.811200	1.351927e-50	2.377287e-48
MsaG000546	MsaG041973	0.802906	7.552057e-49	1.090737e-46
MsaG000546	MsaG042222	0.823011	3.074939e-53	7.327965e-51
MsaG000546	MsaG042327	0.823853	1.958701e-53	4.775415e-51
MsaG000546	MsaG042557	0.840088	1.983052e-57	7.762842e-55
MsaG000546	MsaG043017	0.812795	6.094054e-51	1.114631e-48
MsaG000546	MsaG044225	0.830648	4.697702e-55	1.384864e-52
MsaG000546	MsaG044863	0.819196	2.304070e-52	4.961384e-50
MsaG000546	MsaG044904	0.808987	4.030993e-50	6.717664e-48
MsaG000546	MsaG045179	0.805921	1.789441e-49	2.771777e-47
MsaG000546	MsaG045285	0.809319	3.424400e-50	5.752206e-48
MsaG000546	MsaG045609	0.814143	3.090411e-51	5.846462e-49
MsaG000546	MsaG045873	0.804968	2.828602e-49	4.285141e-47
MsaG000546	MsaG045950	0.800298	2.573184e-48	3.502470e-46
MsaG000546	MsaG046403	0.850057	4.131509e-60	2.243399e-57
MsaG000546	MsaG046702	0.811276	1.301383e-50	2.292738e-48
MsaG000546	MsaG047118	0.837021	1.217395e-56	4.333099e-54
MsaG000546	MsaG047135	0.877242	1.535332e-68	2.440967e-65
MsaG000546	MsaG002231	0.806364	1.444901e-49	2.261788e-47
MsaG000546	MsaG002575	0.837414	9.666133e-57	3.482193e-54
MsaG000546	MsaG009633	0.841911	6.622351e-58	2.746268e-55
MsaG000546	MsaG014425	0.822770	3.497998e-53	8.282171e-51
MsaG000546	MsaG016780	0.804024	4.440991e-49	6.582342e-47
MsaG000546	MsaG016790	0.802081	1.115205e-48	1.580540e-46
MsaG000546	MsaG012483	0.812653	6.543255e-51	1.192560e-48
MsaG000546	MsaG024279	0.823614	2.226662e-53	5.393969e-51
MsaG000546	MsaG027101	0.828574	1.492012e-54	4.146435e-52
MsaG000546	MsaG034520	0.857812	2.467003e-62	1.766548e-59
MsaG000546	MsaG031718	0.821166	8.192451e-53	1.858352e-50
MsaG000546	MsaG032809	0.819554	1.911427e-52	4.154446e-50
MsaG000546	MsaG031279	0.800436	2.412739e-48	3.294434e-46
MsaG000546	MsaG030000	0.800779	2.054813e-48	2.827599e-46
MsaG000546	MsaG037377	0.818249	3.772641e-52	7.924903e-50
MsaG000546	MsaG039794	0.802476	9.257183e-49	1.323903e-46
MsaG000546	MsaG035112	0.810056	2.381793e-50	4.072957e-48
MsaG000546	MsaG040619	0.827222	3.145080e-54	8.414587e-52
MsaG000546	MsaG038711	0.806039	1.690898e-49	2.626429e-47
MsaG000546	MsaG036743	0.802817	7.878582e-49	1.135552e-46
MsaG000546	MsaG043534	0.834545	5.125229e-56	1.693550e-53
MsaG000546	MsaG042135	0.813126	5.160988e-51	9.518016e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000546	MtrunA17_Chr1g0150721	95.105	143	6	1	146	288	1	142	3.64e-97	281
MsaG000546	MtrunA17_Chr3g0136431	59.060	149	49	4	146	288	1	143	1.32e-53	171
MsaG000546	MtrunA17_Chr1g0202341	66.964	112	36	1	1	112	14	124	6.41e-44	158
MsaG000546	MtrunA17_Chr3g0077241	60.215	93	32	3	1	92	1	89	5.12e-32	115
MsaG000546	MtrunA17_Chr4g0052331	53.846	91	41	1	1	91	6	95	1.15e-27	102
MsaG000546	MtrunA17_Chr4g0008841	31.034	145	71	4	147	283	13	136	3.63e-17	76.3
MsaG000546	MtrunA17_Chr7g0240831	31.298	131	69	2	147	277	22	131	3.16e-15	71.2
MsaG000546	MtrunA17_Chr7g0240841	31.298	131	69	2	147	277	22	131	3.16e-15	71.2
MsaG000546	MtrunA17_Chr2g0329361	51.515	66	32	0	37	102	59	124	3.91e-15	73.6
MsaG000546	MtrunA17_Chr7g0240861	30.000	140	76	4	147	284	27	146	3.88e-14	68.6
MsaG000546	MtrunA17_Chr4g0032581	30.645	124	64	3	150	273	35	136	7.51e-14	67.8
MsaG000546	MtrunA17_Chr4g0032571	28.455	123	66	2	146	268	27	127	5.49e-13	65.1
MsaG000546	MtrunA17_Chr4g0032291	31.579	133	66	4	150	278	46	157	1.60e-12	64.3
MsaG000546	MtrunA17_Chr2g0329421	40.541	74	40	1	24	93	8	81	7.88e-12	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000546	AT5G20650.1	55.102	147	61	3	146	288	1	146	3.62e-48	157
MsaG000546	AT2G26975.1	33.333	150	72	4	125	273	9	131	1.46e-20	86.3
MsaG000546	AT5G59040.1	33.333	144	69	3	130	273	19	135	5.57e-18	79.3
MsaG000546	AT3G06250.2	45.679	81	41	1	16	93	2	82	8.95e-14	72.0
MsaG000546	AT3G06250.1	45.679	81	41	1	16	93	2	82	8.95e-14	72.0
MsaG000546	AT3G06250.3	45.679	81	41	1	16	93	2	82	8.95e-14	72.0
MsaG000546	AT2G37925.1	30.769	130	72	2	144	273	27	138	2.09e-13	66.6
MsaG000546	AT5G59030.1	27.778	144	80	3	150	287	45	170	6.65e-13	65.9
MsaG000546	AT3G46900.1	27.465	142	77	4	152	287	35	156	1.96e-12	64.3
MsaG000546	AT5G18960.2	49.153	59	30	0	35	93	39	97	5.87e-12	66.2
MsaG000546	AT5G18960.1	49.153	59	30	0	35	93	39	97	5.87e-12	66.2

Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCAACATTCTACCAATATT+TGG	0.138215	1:-7082191	MsaT000546.1:CDS
AATGGTAGTTCGTTATTTAT+AGG	0.193209	1:+7084211	None:intergenic
TTGTTCAAAGGAAGGGTTTC+GGG	0.231331	1:-7084029	MsaT000546.1:CDS
GAGATTCGGACTCCTCTTCT+TGG	0.249119	1:-7082106	MsaT000546.1:CDS
ACCAATATTTGGAAAATATT+CGG	0.254322	1:-7082180	MsaT000546.1:CDS
TCCTCTTCTTGGGTTGAATA+AGG	0.262656	1:-7082095	MsaT000546.1:CDS
CATTCCTTCAAAGGGCTCTA+AGG	0.274189	1:+7084180	None:intergenic
TGACACTCTTATTTGATTCA+TGG	0.286816	1:-7082267	MsaT000546.1:CDS
TGATGCACATGACATTATAT+TGG	0.315744	1:-7082300	MsaT000546.1:CDS
GATGCACATGACATTATATT+GGG	0.333053	1:-7082299	MsaT000546.1:CDS
CGTTTGGTTACTTCTTGTTT+AGG	0.336421	1:-7081949	MsaT000546.1:CDS
AGAACAGACGGAATGATAAT+TGG	0.340924	1:-7084064	MsaT000546.1:CDS
ATTCATGGAAAACCAATTCA+TGG	0.342364	1:-7082252	MsaT000546.1:CDS
TTGGCTATAATGTCGTTTAA+TGG	0.343696	1:-7082004	MsaT000546.1:CDS
ATGTCAAGAGCAGCAGTTTC+AGG	0.356702	1:+7084238	None:intergenic
TTTGGTGTGAATTCTGCTAT+TGG	0.364233	1:-7082040	MsaT000546.1:CDS
ATTGTGGTTGGTTTAACGTT+TGG	0.388729	1:-7081965	MsaT000546.1:CDS
TAGATAACTCGTCCATGAAT+TGG	0.393378	1:+7082240	None:intergenic
AGATTCGGACTCCTCTTCTT+GGG	0.397569	1:-7082105	MsaT000546.1:CDS
TTGGTGTGAATTCTGCTATT+GGG	0.404245	1:-7082039	MsaT000546.1:CDS
ATTTGGAAAATATTCGGATT+CGG	0.414816	1:-7082174	MsaT000546.1:CDS
AGTCGCCGGTGCCGGAGATT+CGG	0.431491	1:-7082120	MsaT000546.1:CDS
TATTGGGTATTTGTTGATGT+TGG	0.437573	1:-7082023	MsaT000546.1:CDS
TTTGTTCAAAGGAAGGGTTT+CGG	0.447784	1:-7084030	MsaT000546.1:CDS
GAGGAACAAGGTTGTTGAAT+CGG	0.457237	1:-7082068	MsaT000546.1:CDS
AATGTCATGTGCATCATCTT+CGG	0.473949	1:+7082307	None:intergenic
CTTAGAGCCCTTTGAAGGAA+TGG	0.476103	1:-7084179	MsaT000546.1:CDS
AGGCAAGGAATCACTACAAA+AGG	0.478706	1:-7084138	MsaT000546.1:CDS
TTGGGTTGAATAAGGTTTCG+AGG	0.486516	1:-7082087	MsaT000546.1:CDS
ATTCCTTCAAAGGGCTCTAA+GGG	0.488264	1:+7084181	None:intergenic
AGAAGAGGAGTCCGAATCTC+CGG	0.488903	1:+7082109	None:intergenic
TGTGAACTCCATTCCTTCAA+AGG	0.507742	1:+7084171	None:intergenic
GAGGACGCAGTCGCCGGTGC+CGG	0.509370	1:-7082128	MsaT000546.1:CDS
GTGAACTCCATTCCTTCAAA+GGG	0.518109	1:+7084172	None:intergenic
TGAGGGGAGGACGCAGTCGC+CGG	0.519658	1:-7082134	MsaT000546.1:CDS
GTGATTCCTTGCCTCTTCGA+TGG	0.520594	1:+7084147	None:intergenic
TAAAGAGTTTCTTTGTTCAA+AGG	0.523442	1:-7084041	MsaT000546.1:CDS
GAGTTTCTTTGTTCAAAGGA+AGG	0.524715	1:-7084037	MsaT000546.1:CDS
GTGTCAGACATGATGAAACT+AGG	0.525439	1:-7083973	MsaT000546.1:CDS
AGTTTCTTTGTTCAAAGGAA+GGG	0.533222	1:-7084036	MsaT000546.1:CDS
ACCTTATTCAACCCAAGAAG+AGG	0.545808	1:+7082094	None:intergenic
GGAGTCCGAATCTCCGGCAC+CGG	0.550760	1:+7082115	None:intergenic
TCAGAGTGAAGAAGAGGCTG+CGG	0.552122	1:-7081924	MsaT000546.1:CDS
TGAAACTGCTGCTCTTGACA+TGG	0.571525	1:-7084236	MsaT000546.1:CDS
CTGTTCTTGATTTAGTAACA+CGG	0.577898	1:+7084080	None:intergenic
TAGGAGTCAGAGTGAAGAAG+AGG	0.579273	1:-7081930	MsaT000546.1:CDS
CACAAACTAAGCACATGCAC+AGG	0.579857	1:+7081886	None:intergenic
GAATAAGGTTTCGAGGAACA+AGG	0.583225	1:-7082080	MsaT000546.1:CDS
AGTAACACGGCCCATGCGAA+AGG	0.583261	1:+7084093	None:intergenic
TGTCAGACATGATGAAACTA+GGG	0.602315	1:-7083972	MsaT000546.1:intron
GCTATAATGTCGTTTAATGG+TGG	0.610087	1:-7082001	MsaT000546.1:CDS
GTTACTAAATCAAGAACAGA+CGG	0.612323	1:-7084076	MsaT000546.1:CDS
TACATCATCAGAACAAGCCA+TGG	0.620956	1:+7084261	None:intergenic
TCACATCCATCGAAGAGGCA+AGG	0.624553	1:-7084153	MsaT000546.1:CDS
AAAAGGTACGCTAAGAACAA+AGG	0.638535	1:-7084121	MsaT000546.1:CDS
TCCTTCAAAGGGCTCTAAGG+GGG	0.640867	1:+7084183	None:intergenic
ATCATCAGAACAAGCCATGG+TGG	0.649034	1:+7084264	None:intergenic
CAGATTAAAGATGACAGATG+TGG	0.651464	1:-7084296	None:intergenic
ATGCACATGACATTATATTG+GGG	0.668922	1:-7082298	MsaT000546.1:CDS
TTCCTTCAAAGGGCTCTAAG+GGG	0.673359	1:+7084182	None:intergenic
GGAGTTCACATCCATCGAAG+AGG	0.673976	1:-7084158	MsaT000546.1:CDS
TGTGGATGAAGATTCCACCA+TGG	0.737062	1:-7084278	MsaT000546.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	7081892	7084308	7081892	ID=MsaG000546
Chr1	mRNA	7081892	7084308	7081892	ID=MsaT000546.1;Parent=MsaG000546
Chr1	exon	7081892	7082422	7081892	ID=MsaT000546.1.exon2;Parent=MsaT000546.1
Chr1	CDS	7081892	7082422	7081892	ID=cds.MsaT000546.1;Parent=MsaT000546.1
Chr1	exon	7083973	7084308	7083973	ID=MsaT000546.1.exon1;Parent=MsaT000546.1
Chr1	CDS	7083973	7084308	7083973	ID=cds.MsaT000546.1;Parent=MsaT000546.1

Gene Sequence

>MsaT000546.1

ATGACAGATGTGGATGAAGATTCCACCATGGCTTGTTCTGATGATGTACCTGAAACTGCTGCTCTTGACATGGATCCTATAAATAACGAACTACCATTAGAGTCCCCCTTAGAGCCCTTTGAAGGAATGGAGTTCACATCCATCGAAGAGGCAAGGAATCACTACAAAAGGTACGCTAAGAACAAAGGTTTTACCTTTCGCATGGGCCGTGTTACTAAATCAAGAACAGACGGAATGATAATTGGTAAAGAGTTTCTTTGTTCAAAGGAAGGGTTTCGGGCAAAAAAATATGCAAAGAAAGAAAATAGCAGTCGTGTCAGACATGATGAAACTAGGAAACACACACAAAAAACAAAAACCTTGAAATTTTCAAAACAACCTTGTTCGTTTTTCCGACATAGATCGGAAAATTTCAAAACCTTAATTTTTCCGAAGATGATGCACATGACATTATATTGGGGAAAAAACGTGACACTCTTATTTGATTCATGGAAAACCAATTCATGGACGAGTTATCTACTGAGTTTAATTGCATGTTTCATGATTGCAACATTCTACCAATATTTGGAAAATATTCGGATTCGGTTGAAGTTTTTCTCTGGTGAGGGGAGGACGCAGTCGCCGGTGCCGGAGATTCGGACTCCTCTTCTTGGGTTGAATAAGGTTTCGAGGAACAAGGTTGTTGAATCGGTTTTATTTGGTGTGAATTCTGCTATTGGGTATTTGTTGATGTTGGCTATAATGTCGTTTAATGGTGGTGTTTTTGTGGCTATTGTGGTTGGTTTAACGTTTGGTTACTTCTTGTTTAGGAGTCAGAGTGAAGAAGAGGCTGCGGTTGTTGTTGATAATTCCTGTGCATGTGCTTAG

Protein sequence

>MsaT000546.1

MTDVDEDSTMACSDDVPETAALDMDPINNELPLESPLEPFEGMEFTSIEEARNHYKRYAKNKGFTFRMGRVTKSRTDGMIIGKEFLCSKEGFRAKKYAKKENSSRVRHDETRKHTQKTKTLKFSKQPCSFFRHRSENFKTLIFPKMMHMTLYWGKNVTLLFDSWKTNSWTSYLLSLIACFMIATFYQYLENIRIRLKFFSGEGRTQSPVPEIRTPLLGLNKVSRNKVVESVLFGVNSAIGYLLMLAIMSFNGGVFVAIVVGLTFGYFLFRSQSEEEAAVVVDNSCACA*