AlfalfaGEDB | MsaG000570

M. sativa ssp. caerulea / MsaG000570

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00643.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000570	ABG57263.1	98.423	317	5	0	1	317	1	317	0.0	655

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000570	sp\|Q940T9\|COL4_ARATH	53.714	350	105	14	1	302	1	341	1.56e-95	290

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000570	tr\|A5X7Z0\|A5X7Z0_MEDSA	98.423	317	5	0	1	317	1	317	0.0	655

TFs/TRs:

Gene ID	Type	Classification
MsaG000570	TF	C2C2-CO-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000286	MsaG000570	0.843115	3.185897e-58	1.373053e-55
MsaG000377	MsaG000570	0.822251	4.610970e-53	1.076527e-50
MsaG000413	MsaG000570	0.828160	1.875674e-54	5.152355e-52
MsaG000570	MsaG000545	0.803499	5.702591e-49	8.349631e-47
MsaG000570	MsaG000621	0.802489	9.201496e-49	1.316319e-46
MsaG000570	MsaG000944	0.810708	1.725628e-50	2.998144e-48
MsaG000570	MsaG001147	0.806244	1.531182e-49	2.390050e-47
MsaG000570	MsaG002213	0.818183	3.902283e-52	8.183628e-50
MsaG000570	MsaG003431	0.800180	2.718343e-48	3.690203e-46
MsaG000570	MsaG003517	0.834290	5.936774e-56	1.946822e-53
MsaG000570	MsaG003738	0.853270	5.131297e-61	3.116852e-58
MsaG000570	MsaG003711	0.809260	3.525777e-50	5.914131e-48
MsaG000570	MsaG003939	0.832282	1.868751e-55	5.776816e-53
MsaG000570	MsaG003976	0.802257	1.026262e-48	1.460335e-46
MsaG000570	MsaG004495	0.834882	4.219695e-56	1.408502e-53
MsaG000570	MsaG004712	0.846033	5.262986e-59	2.495393e-56
MsaG000570	MsaG005232	0.805083	2.676946e-49	4.066211e-47
MsaG000570	MsaG005257	0.808541	5.014948e-50	8.268084e-48
MsaG000570	MsaG005338	0.848932	8.479439e-60	4.431400e-57
MsaG000570	MsaG005345	0.818604	3.137170e-52	6.651168e-50
MsaG000570	MsaG005831	0.802849	7.760396e-49	1.119315e-46
MsaG000570	MsaG005769	0.843191	3.040384e-58	1.313503e-55
MsaG000570	MsaG006129	0.800745	2.088229e-48	2.871337e-46
MsaG000570	MsaG006475	0.806454	1.383822e-49	2.170798e-47
MsaG000570	MsaG006476	0.831615	2.725586e-55	8.263754e-53
MsaG000570	MsaG006491	0.806303	1.488352e-49	2.326427e-47
MsaG000570	MsaG006504	0.849474	6.003969e-60	3.196458e-57
MsaG000570	MsaG006563	0.825980	6.200323e-54	1.602617e-51
MsaG000570	MsaG006686	0.818242	3.786440e-52	7.952516e-50
MsaG000570	MsaG007064	0.850712	2.712814e-60	1.506792e-57
MsaG000570	MsaG007212	0.833472	9.486123e-56	3.036464e-53
MsaG000570	MsaG007610	0.828501	1.554167e-54	4.310364e-52
MsaG000570	MsaG008062	0.834513	5.220341e-56	1.723393e-53
MsaG000570	MsaG008330	0.826715	4.150813e-54	1.095008e-51
MsaG000570	MsaG008458	0.822273	4.558025e-53	1.064772e-50
MsaG000570	MsaG008647	0.801498	1.466805e-48	2.051469e-46
MsaG000570	MsaG009871	0.823623	2.215873e-53	5.369184e-51
MsaG000570	MsaG010305	0.832477	1.672377e-55	5.199272e-53
MsaG000570	MsaG011043	0.800560	2.277083e-48	3.117922e-46
MsaG000570	MsaG011230	0.803169	6.668593e-49	9.690151e-47
MsaG000570	MsaG011389	0.823438	2.447344e-53	5.899925e-51
MsaG000570	MsaG012430	0.816237	1.064375e-51	2.123100e-49
MsaG000570	MsaG013503	0.804403	3.705733e-49	5.540920e-47
MsaG000570	MsaG014554	0.815162	1.842310e-51	3.575902e-49
MsaG000570	MsaG014844	0.836102	2.080918e-56	7.204596e-54
MsaG000570	MsaG015690	0.818564	3.202561e-52	6.782494e-50
MsaG000570	MsaG016385	0.853132	5.617861e-61	3.395843e-58
MsaG000570	MsaG016531	0.813937	3.429904e-51	6.455561e-49
MsaG000570	MsaG017148	0.802329	9.922011e-49	1.414246e-46
MsaG000570	MsaG017725	0.840077	1.995738e-57	7.809795e-55
MsaG000570	MsaG017825	0.819071	2.459526e-52	5.278684e-50
MsaG000570	MsaG017906	0.806892	1.119421e-49	1.774153e-47
MsaG000570	MsaG017957	0.830319	5.646916e-55	1.649225e-52
MsaG000570	MsaG017963	0.809260	3.524635e-50	5.912311e-48
MsaG000570	MsaG018501	0.818584	3.169625e-52	6.716417e-50
MsaG000570	MsaG018592	0.824016	1.793920e-53	4.393271e-51
MsaG000570	MsaG018682	0.810177	2.244138e-50	3.848815e-48
MsaG000570	MsaG018792	0.843646	2.301867e-58	1.009111e-55
MsaG000570	MsaG018958	0.805290	2.423938e-49	3.699592e-47
MsaG000570	MsaG019184	0.803178	6.638512e-49	9.648512e-47
MsaG000570	MsaG019616	0.850356	3.409750e-60	1.870629e-57
MsaG000570	MsaG020533	0.838192	6.114808e-57	2.255981e-54
MsaG000570	MsaG020577	0.814801	2.214073e-51	4.258549e-49
MsaG000570	MsaG020592	0.822948	3.180787e-53	7.567221e-51
MsaG000570	MsaG020860	0.824257	1.575922e-53	3.884633e-51
MsaG000570	MsaG021274	0.828682	1.405925e-54	3.918871e-52
MsaG000570	MsaG021343	0.809250	3.542394e-50	5.940708e-48
MsaG000570	MsaG021422	0.864567	2.210475e-64	2.052531e-61
MsaG000570	MsaG022321	0.801783	1.282970e-48	1.806007e-46
MsaG000570	MsaG023035	0.829492	8.965562e-55	2.557250e-52
MsaG000570	MsaG023272	0.840285	1.762863e-57	6.943628e-55
MsaG000570	MsaG023997	0.813048	5.367155e-51	9.879193e-49
MsaG000570	MsaG024823	0.816379	9.895354e-52	1.980993e-49
MsaG000570	MsaG026756	0.828411	1.633305e-54	4.518370e-52
MsaG000570	MsaG026798	0.802873	7.671074e-49	1.107084e-46
MsaG000570	MsaG027342	0.810907	1.563303e-50	2.729343e-48
MsaG000570	MsaG027500	0.826828	3.902065e-54	1.032585e-51
MsaG000570	MsaG027802	0.830524	5.035430e-55	1.479209e-52
MsaG000570	MsaG027935	0.873323	3.308105e-67	4.419815e-64
MsaG000570	MsaG028003	0.831820	2.426847e-55	7.402744e-53
MsaG000570	MsaG028627	0.822869	3.316849e-53	7.874318e-51
MsaG000570	MsaG028906	0.844437	1.415898e-58	6.368527e-56
MsaG000570	MsaG028927	0.803200	6.570493e-49	9.554454e-47
MsaG000570	MsaG029106	0.822142	4.884952e-53	1.137190e-50
MsaG000570	MsaG029174	0.819603	1.863513e-52	4.055457e-50
MsaG000570	MsaG030494	0.821423	7.152297e-53	1.633388e-50
MsaG000570	MsaG030698	0.805143	2.600970e-49	3.956408e-47
MsaG000570	MsaG032424	0.815007	1.993615e-51	3.854617e-49
MsaG000570	MsaG033264	0.826984	3.582801e-54	9.522167e-52
MsaG000570	MsaG033487	0.806054	1.678423e-49	2.608042e-47
MsaG000570	MsaG033570	0.827619	2.527452e-54	6.838306e-52
MsaG000570	MsaG033578	0.808211	5.894425e-50	9.641056e-48
MsaG000570	MsaG033579	0.804250	3.986638e-49	5.939954e-47
MsaG000570	MsaG034510	0.803340	6.147255e-49	8.967841e-47
MsaG000570	MsaG035531	0.891064	1.233304e-73	3.842168e-70
MsaG000570	MsaG035553	0.848532	1.093727e-59	5.638077e-57
MsaG000570	MsaG035715	0.841824	6.979863e-58	2.886281e-55
MsaG000570	MsaG037735	0.819380	2.093883e-52	4.530548e-50
MsaG000570	MsaG038752	0.830669	4.640796e-55	1.368978e-52
MsaG000570	MsaG040450	0.808076	6.295930e-50	1.026447e-47
MsaG000570	MsaG041814	0.813606	4.053493e-51	7.566010e-49
MsaG000570	MsaG042634	0.810818	1.634204e-50	2.846947e-48
MsaG000570	MsaG042790	0.819049	2.488002e-52	5.336768e-50
MsaG000570	MsaG044570	0.851077	2.142503e-60	1.205133e-57
MsaG000570	MsaG044602	0.830369	5.491532e-55	1.606132e-52
MsaG000570	MsaG044993	0.847776	1.764233e-59	8.868002e-57
MsaG000570	MsaG045234	0.830443	5.268232e-55	1.544065e-52
MsaG000570	MsaG045242	0.809635	2.932037e-50	4.963056e-48
MsaG000570	MsaG045302	0.831459	2.976216e-55	8.982254e-53
MsaG000570	MsaG045275	0.819861	1.627638e-52	3.566479e-50
MsaG000570	MsaG045326	0.841548	8.246872e-58	3.380447e-55
MsaG000570	MsaG045454	0.803021	7.151816e-49	1.035680e-46
MsaG000570	MsaG045456	0.837570	8.820590e-57	3.192623e-54
MsaG000570	MsaG045868	0.820690	1.053237e-52	2.359004e-50
MsaG000570	MsaG045994	0.857477	3.096443e-62	2.189734e-59
MsaG000570	MsaG046108	0.803541	5.588239e-49	8.190485e-47
MsaG000570	MsaG046172	0.836616	1.542620e-56	5.423880e-54
MsaG000570	MsaG046687	0.812869	5.871598e-51	1.075938e-48
MsaG000570	MsaG046740	0.817158	6.630987e-52	1.354372e-49
MsaG000570	MsaG046755	0.808535	5.030644e-50	8.292762e-48
MsaG000570	MsaG046784	0.820601	1.104006e-52	2.466930e-50
MsaG000570	MsaG046973	0.803842	4.843172e-49	7.147931e-47
MsaG000570	MsaG001761	0.834338	5.773376e-56	1.896036e-53
MsaG000570	MsaG002107	0.824559	1.338971e-53	3.327924e-51
MsaG000570	MsaG003008	0.810485	1.926484e-50	3.329083e-48
MsaG000570	MsaG000782	0.803770	5.012474e-49	7.385469e-47
MsaG000570	MsaG003314	0.830784	4.351409e-55	1.287886e-52
MsaG000570	MsaG002432	0.805069	2.695042e-49	4.092377e-47
MsaG000570	MsaG001760	0.853183	5.432552e-61	3.289718e-58
MsaG000570	MsaG013040	0.817983	4.329455e-52	9.032832e-50
MsaG000570	MsaG012731	0.804865	2.972297e-49	4.492105e-47
MsaG000570	MsaG015535	0.814946	2.056079e-51	3.969202e-49
MsaG000570	MsaG014169	0.800856	1.982434e-48	2.732644e-46
MsaG000570	MsaG013414	0.825448	8.277007e-54	2.107912e-51
MsaG000570	MsaG019320	0.823311	2.618840e-53	6.291878e-51
MsaG000570	MsaG019481	0.804301	3.891028e-49	5.804381e-47
MsaG000570	MsaG019406	0.829209	1.049019e-54	2.967708e-52
MsaG000570	MsaG028138	0.812545	6.909216e-51	1.255919e-48
MsaG000570	MsaG031529	0.830650	4.692651e-55	1.383473e-52
MsaG000570	MsaG031608	0.841541	8.285135e-58	3.395280e-55
MsaG000570	MsaG033833	0.820385	1.236522e-52	2.747450e-50
MsaG000570	MsaG031895	0.800547	2.290973e-48	3.136015e-46
MsaG000570	MsaG030622	0.810528	1.886740e-50	3.263776e-48
MsaG000570	MsaG032721	0.873307	3.347947e-67	4.470044e-64
MsaG000570	MsaG038135	0.850123	3.960212e-60	2.155169e-57
MsaG000570	MsaG036891	0.846272	4.534340e-59	2.167069e-56
MsaG000570	MsaG037829	0.811257	1.313841e-50	2.313593e-48
MsaG000570	MsaG036344	0.802817	7.878532e-49	1.135552e-46
MsaG000570	MsaG043789	0.840406	1.639274e-57	6.481513e-55
MsaG000570	MsaG045902	0.847547	2.038196e-59	1.016597e-56
MsaG000570	MsaG043768	0.804898	2.925426e-49	4.424626e-47
MsaG000570	MsaG041725	0.826900	3.751009e-54	9.946250e-52
MsaG000570	MsaG046904	0.805732	1.960130e-49	3.022746e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000570	MtrunA17_Chr1g0150471	95.268	317	14	1	1	317	1	316	0.0	628
MsaG000570	MtrunA17_Chr3g0136701	55.077	325	103	8	1	317	1	290	8.16e-103	303
MsaG000570	MtrunA17_Chr4g0072871	45.810	358	146	7	4	316	20	374	9.17e-94	283
MsaG000570	MtrunA17_Chr7g0220721	62.500	88	33	0	4	91	24	111	5.50e-35	130
MsaG000570	MtrunA17_Chr7g0220721	66.216	74	17	1	251	316	322	395	9.19e-24	100
MsaG000570	MtrunA17_Chr1g0155811	46.392	97	42	1	6	92	5	101	1.39e-22	95.1
MsaG000570	MtrunA17_Chr5g0429341	37.692	130	76	2	5	131	4	131	4.14e-21	92.8
MsaG000570	MtrunA17_Chr5g0405151	44.565	92	41	2	5	88	4	93	3.65e-19	83.6
MsaG000570	MtrunA17_Chr4g0035651	43.299	97	45	1	6	92	5	101	5.90e-19	84.0
MsaG000570	MtrunA17_Chr2g0314671	41.667	96	47	1	6	92	5	100	3.73e-18	83.2
MsaG000570	MtrunA17_Chr4g0033641	42.391	92	44	1	6	88	5	96	4.83e-18	81.6
MsaG000570	MtrunA17_Chr3g0120711	37.500	104	64	1	5	108	4	106	5.68e-18	84.0
MsaG000570	MtrunA17_Chr3g0145061	41.237	97	47	1	6	92	5	101	1.74e-17	80.1
MsaG000570	MtrunA17_Chr7g0268691	39.326	89	53	1	6	94	20	107	7.09e-17	80.5
MsaG000570	MtrunA17_Chr7g0268691	35.659	129	69	4	172	297	252	369	6.04e-12	65.9
MsaG000570	MtrunA17_Chr3g0142221	37.864	103	53	1	6	97	5	107	2.19e-16	77.0
MsaG000570	MtrunA17_Chr2g0329511	40.217	92	46	1	6	88	5	96	6.85e-16	75.9
MsaG000570	MtrunA17_Chr7g0251781	38.710	93	52	1	6	98	5	92	1.74e-14	73.6
MsaG000570	MtrunA17_Chr2g0322941	29.245	212	117	8	5	206	43	231	1.40e-13	69.3
MsaG000570	MtrunA17_Chr5g0431351	49.275	69	32	1	233	298	148	216	6.61e-13	67.0
MsaG000570	MtrunA17_Chr1g0209071	36.486	74	47	0	4	77	3	76	1.43e-12	67.4
MsaG000570	MtrunA17_Chr1g0209861	46.341	82	37	2	222	301	351	427	1.16e-11	65.1
MsaG000570	MtrunA17_Chr8g0390971	68.182	44	14	0	256	299	358	401	1.72e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000570	AT5G24930.1	53.714	350	105	14	1	302	1	341	1.59e-96	290
MsaG000570	AT2G24790.1	53.074	309	104	11	2	304	4	277	9.30e-95	283
MsaG000570	AT3G02380.1	42.899	338	163	7	4	316	14	346	2.57e-82	253
MsaG000570	AT5G57660.1	43.103	348	154	10	2	316	18	354	3.12e-73	230
MsaG000570	AT5G15850.1	40.230	348	166	9	6	316	12	354	3.98e-70	222
MsaG000570	AT5G15840.1	39.335	361	161	13	6	316	20	372	7.35e-70	222
MsaG000570	AT2G24790.2	50.237	211	75	7	2	208	4	188	1.11e-57	186
MsaG000570	AT5G15840.2	35.000	240	114	9	6	211	20	251	1.23e-34	127
MsaG000570	AT2G21320.1	44.211	95	43	2	5	91	4	96	5.09e-19	83.2
MsaG000570	AT4G38960.1	43.158	95	44	2	5	91	4	96	1.05e-18	82.8
MsaG000570	AT4G38960.6	43.158	95	44	2	5	91	4	96	1.05e-18	82.8
MsaG000570	AT1G78600.1	42.708	96	46	1	6	92	5	100	1.84e-18	84.3
MsaG000570	AT1G78600.2	42.708	96	46	1	6	92	5	100	2.39e-18	84.3
MsaG000570	AT1G75540.1	40.404	99	47	1	6	92	5	103	1.19e-17	82.8
MsaG000570	AT2G47890.3	40.659	91	52	1	4	94	11	99	1.61e-17	82.0
MsaG000570	AT2G47890.1	40.659	91	52	1	4	94	11	99	1.72e-17	82.0
MsaG000570	AT2G47890.1	56.000	50	22	0	251	300	282	331	6.19e-11	62.8
MsaG000570	AT2G47890.2	40.659	91	52	1	4	94	11	99	2.61e-17	80.1
MsaG000570	AT2G33500.1	40.449	89	53	0	6	94	12	100	4.61e-17	81.6
MsaG000570	AT2G33500.1	50.794	63	30	1	239	300	339	401	5.66e-11	63.5
MsaG000570	AT2G33500.2	40.449	89	53	0	6	94	12	100	4.67e-17	81.6
MsaG000570	AT2G33500.2	50.794	63	30	1	239	300	338	400	5.86e-11	63.5
MsaG000570	AT1G06040.1	43.478	92	43	1	6	88	5	96	1.13e-16	78.6
MsaG000570	AT1G06040.2	43.478	92	43	1	6	88	5	96	2.04e-16	76.3
MsaG000570	AT1G28050.1	40.449	89	53	0	6	94	9	97	2.10e-16	79.7
MsaG000570	AT5G48250.1	42.667	75	43	0	5	79	4	78	2.41e-16	79.3
MsaG000570	AT2G31380.1	29.798	198	80	6	6	144	5	202	1.15e-15	75.5
MsaG000570	AT3G07650.3	42.466	73	42	0	5	77	4	76	2.36e-15	76.3
MsaG000570	AT3G07650.2	42.466	73	42	0	5	77	4	76	2.36e-15	76.3
MsaG000570	AT3G07650.4	42.466	73	42	0	5	77	4	76	2.36e-15	76.3
MsaG000570	AT3G07650.1	42.466	73	42	0	5	77	4	76	2.36e-15	76.3
MsaG000570	AT4G15250.1	40.476	84	50	0	6	89	5	88	3.28e-15	75.5
MsaG000570	AT4G39070.1	38.776	98	50	1	5	92	4	101	2.46e-14	72.0
MsaG000570	AT1G68190.1	36.264	91	56	1	4	94	12	100	7.89e-14	71.6
MsaG000570	AT1G68190.3	36.264	91	56	1	4	94	12	100	7.89e-14	71.6
MsaG000570	AT1G68190.2	38.961	77	47	0	4	80	41	117	8.58e-14	71.6
MsaG000570	AT1G49130.1	53.968	63	29	0	237	299	259	321	1.24e-13	70.9
MsaG000570	AT1G49130.2	53.968	63	29	0	237	299	252	314	1.39e-13	70.9
MsaG000570	AT4G10240.1	36.275	102	46	2	6	92	5	102	2.10e-13	67.4
MsaG000570	AT1G73870.1	70.213	47	14	0	255	301	344	390	2.19e-13	70.5
MsaG000570	AT3G21880.3	36.364	88	46	1	6	83	9	96	6.76e-13	68.9
MsaG000570	AT3G21880.2	36.364	88	46	1	6	83	9	96	6.76e-13	68.9
MsaG000570	AT3G21880.1	36.364	88	46	1	6	83	5	92	7.35e-13	68.9
MsaG000570	AT1G68520.1	64.583	48	17	0	256	303	357	404	5.35e-12	66.6
MsaG000570	AT5G14370.1	66.667	45	15	0	256	300	294	338	1.09e-11	65.1
MsaG000570	AT1G25440.1	69.767	43	13	0	256	298	361	403	2.96e-11	64.3

Find 87 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAATTGAGATCAGGGAATTT+AGG	0.162993	1:-7470806	None:intergenic
AGCAGCTGCGTCGGCTTTGC+AGG	0.207136	1:-7470591	None:intergenic
GCGAACCTTCCTTTAATTCT+AGG	0.234127	1:-7471382	None:intergenic
GAAACTAGACCTAGAATTAA+AGG	0.239849	1:+7471373	MsaT000570.1:CDS
ATTTAGGGTTTGAAGGAGTT+TGG	0.272290	1:-7470790	None:intergenic
AATTGAGATCAGGGAATTTA+GGG	0.282604	1:-7470805	None:intergenic
GTGACGAAATCGTCAATTTC+GGG	0.319268	1:-7470845	None:intergenic
TGTTGCTTTGGATGACTTGC+AGG	0.340517	1:-7470435	None:intergenic
AAGAAGCAGAAGCTGCTTCC+TGG	0.355450	1:+7470762	MsaT000570.1:CDS
TCAGGGAATTTAGGGTTTGA+AGG	0.367060	1:-7470797	None:intergenic
AGTGACGAAATCGTCAATTT+CGG	0.368521	1:-7470846	None:intergenic
GACGCCATCTGCGGTGGTGC+CGG	0.374473	1:-7470906	None:intergenic
CACCGCAGATGGCGTCGTTC+CGG	0.376246	1:+7470913	MsaT000570.1:CDS
GTGGCGGGAGGCGAGTTTGT+TGG	0.388480	1:-7470519	None:intergenic
GTTGTTGTTGTGGTGGTGGA+AGG	0.394821	1:-7470690	None:intergenic
GAGAGAAAAGAAAGAATAGA+AGG	0.401420	1:+7471308	MsaT000570.1:CDS
GAGTGTGACGCGGTGGTGGC+GGG	0.403622	1:-7470534	None:intergenic
TAGTGAGAGTAATTGAGATC+AGG	0.412297	1:-7470815	None:intergenic
ACGGCAGAATAGTGTTGCTT+TGG	0.415438	1:-7470447	None:intergenic
CAGAGAAGAATGATTGTTGT+TGG	0.418301	1:-7470715	None:intergenic
AGCTTCTGCTTCTTCGTTGG+TGG	0.421356	1:-7470753	None:intergenic
GGCTGTTGTTGTTGTGGTGG+TGG	0.426525	1:-7470694	None:intergenic
CCGTCTCTGTCGCCGTCGTT+TGG	0.426542	1:-7471222	None:intergenic
ACGCCATCTGCGGTGGTGCC+GGG	0.428709	1:-7470905	None:intergenic
AGAGTGTGACGCGGTGGTGG+CGG	0.429623	1:-7470535	None:intergenic
AACTTCATACATAGTTCAAC+AGG	0.431616	1:-7471464	None:intergenic
AGTGAGAGTAATTGAGATCA+GGG	0.433298	1:-7470814	None:intergenic
TCCGTCATCACGTTTCCGTC+TGG	0.440194	1:-7471181	None:intergenic
CGTTCGTGGCGGCGAGCTAG+TGG	0.441707	1:-7470653	None:intergenic
ATCGGAACCGCCACCGTCAT+CGG	0.447848	1:-7471247	None:intergenic
CCGGAGCTTGTTCACAGACT+TGG	0.464846	1:-7470559	None:intergenic
TTAGGTATCTTCGCCGTCGA+TGG	0.464857	1:+7471144	MsaT000570.1:intron
TGGTGGTGGAAGGTGGTGAG+AGG	0.469506	1:-7470680	None:intergenic
TCTCTTTCCACCGCCGTCAT+CGG	0.470887	1:-7471265	None:intergenic
AGCAGCTTCTGCTTCTTCGT+TGG	0.474181	1:-7470756	None:intergenic
GCTTTGCAGGTGACGTGAGC+CGG	0.474575	1:-7470578	None:intergenic
GGCGGTTCCGATGACGGCGG+TGG	0.476197	1:+7471258	MsaT000570.1:CDS
GACGGTGGCGGTTCCGATGA+CGG	0.482863	1:+7471252	MsaT000570.1:CDS
GACGATTTCGTCACTGTCAA+CGG	0.491915	1:+7470854	MsaT000570.1:CDS
TTAATTGCAGAGGATGAATA+CGG	0.494889	1:+7471430	MsaT000570.1:CDS
TGAAGGAGTTTGGAGAAGCC+AGG	0.505414	1:-7470780	None:intergenic
GGCAGAGTGTGACGCGGTGG+TGG	0.506125	1:-7470538	None:intergenic
GTAGTGTTCGTGTTCGTGTT+CGG	0.509358	1:-7470960	None:intergenic
GTTGTTGTGGTGGTGGAAGG+TGG	0.511007	1:-7470687	None:intergenic
TGGTGAGAGGGACACGTTCG+TGG	0.516914	1:-7470667	None:intergenic
GTTGGCTGTTGTTGTTGTGG+TGG	0.517079	1:-7470697	None:intergenic
GGTATCTTCGCCGTCGATGG+AGG	0.526645	1:+7471147	MsaT000570.1:intron
CCAAGTCTGTGAACAAGCTC+CGG	0.534270	1:+7470559	MsaT000570.1:CDS
AAATATGAATTTAATTGCAG+AGG	0.534945	1:+7471420	MsaT000570.1:CDS
TTCGTGTTCGTGTTCGGTGG+TGG	0.536195	1:-7470954	None:intergenic
AGTCCCGGCACCACCGCAGA+TGG	0.542153	1:+7470902	MsaT000570.1:CDS
CGGCGGTGGAAAGAGAAGCT+AGG	0.543681	1:+7471272	MsaT000570.1:CDS
GTTCGTGGCGGCGAGCTAGT+GGG	0.545982	1:-7470652	None:intergenic
GTTGTTGGCTGTTGTTGTTG+TGG	0.546859	1:-7470700	None:intergenic
GGTGGTGGAAGGTGGTGAGA+GGG	0.548296	1:-7470679	None:intergenic
AGGCGAGTTTGTTGGCAGCA+TGG	0.549459	1:-7470511	None:intergenic
AGAGTGGATGTCATGATCAC+AGG	0.550527	1:-7470624	None:intergenic
TCTTCGCCGTCGATGGAGGT+TGG	0.551535	1:+7471151	MsaT000570.1:CDS
ACGCCGGAGCAAAACAGTCC+CGG	0.553478	1:+7470887	MsaT000570.1:CDS
CGGAACGACGCCATCTGCGG+TGG	0.553872	1:-7470912	None:intergenic
GGCGGTGGAAAGAGAAGCTA+GGG	0.558883	1:+7471273	MsaT000570.1:CDS
GACGGCGCCGATGACGGTGG+CGG	0.560155	1:+7471240	MsaT000570.1:CDS
ACCAGACGGAAACGTGATGA+CGG	0.572547	1:+7471180	MsaT000570.1:CDS
TGATTGAAATTGTAAGTGAA+AGG	0.578430	1:-7471016	None:intergenic
TGTGACGCGGTGGTGGCGGG+AGG	0.581988	1:-7470531	None:intergenic
TTTGTTGGCAGCATGGATGT+TGG	0.587996	1:-7470504	None:intergenic
CACCGGAACGACGCCATCTG+CGG	0.589463	1:-7470915	None:intergenic
GACAGAGACGGCGCCGATGA+CGG	0.593724	1:+7471234	MsaT000570.1:CDS
CCAAACGACGGCGACAGAGA+CGG	0.604022	1:+7471222	MsaT000570.1:CDS
TGGAATCACATGTGAGACAA+AGG	0.606070	1:-7470484	None:intergenic
GATACATAGAGCAGCTGCGT+CGG	0.618915	1:-7470600	None:intergenic
CTAGACCTAGAATTAAAGGA+AGG	0.629185	1:+7471377	MsaT000570.1:CDS
AAAGGAAAGCTGAATCAGAA+CGG	0.631900	1:-7470466	None:intergenic
ACAACTCCAACCTCCATCGA+CGG	0.637687	1:-7471157	None:intergenic
GTGTTCGTGTTCGTGTTCGG+TGG	0.637730	1:-7470957	None:intergenic
GAGCTAGTGGGTTAGCAGAG+TGG	0.641063	1:-7470640	None:intergenic
TCATACATAGTTCAACAGGA+AGG	0.676360	1:-7471460	None:intergenic
AGAGACGGCGCCGATGACGG+TGG	0.685333	1:+7471237	MsaT000570.1:CDS
GAGGTTGGAGTTGTACCAGA+CGG	0.695762	1:+7471166	MsaT000570.1:CDS
TGAGAGGGACACGTTCGTGG+CGG	0.705181	1:-7470664	None:intergenic
CAACGGTAAAACAGACACGC+CGG	0.705434	1:+7470871	MsaT000570.1:CDS
CTTGGCAGAGTGTGACGCGG+TGG	0.706255	1:-7470541	None:intergenic
AGACTTGGCAGAGTGTGACG+CGG	0.706454	1:-7470544	None:intergenic
TGACGAAATCGTCAATTTCG+GGG	0.717237	1:-7470844	None:intergenic
GTACTGCGGTTACCAAACGA+CGG	0.762753	1:+7471210	MsaT000570.1:CDS
GGTGGCGGTTCCGATGACGG+CGG	0.772550	1:+7471255	MsaT000570.1:CDS
ATGACGGAGATATCGTACTG+CGG	0.812252	1:+7471196	MsaT000570.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	7470413	7471471	7470413	ID=MsaG000570
Chr1	mRNA	7470413	7471471	7470413	ID=MsaT000570.1;Parent=MsaG000570
Chr1	exon	7470413	7471042	7470413	ID=MsaT000570.1.exon1;Parent=MsaT000570.1
Chr1	CDS	7470413	7471042	7470413	ID=cds.MsaT000570.1;Parent=MsaT000570.1
Chr1	exon	7471148	7471471	7471148	ID=MsaT000570.1.exon2;Parent=MsaT000570.1
Chr1	CDS	7471148	7471471	7471148	ID=cds.MsaT000570.1;Parent=MsaT000570.1

Gene Sequence

>MsaT000570.1

ATGGCTACTAAGCTATGTGATTCCTGCAAGTCATCCAAAGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTTTGTCTCACATGTGATTCCAACATCCATGCTGCCAACAAACTCGCCTCCCGCCACCACCGCGTCACACTCTGCCAAGTCTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGCTCTATGTATCTCCTGTGATCATGACATCCACTCTGCTAACCCACTAGCTCGCCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAACAGCCAACAACAATCATTCTTCTCTGAAAATGATCACGATGCCACCAACGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATTGACGATTTCGTCACTGTCAACGGTAAAACAGACACGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTATCTTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGACGGAGATATCGTACTGCGGTTACCAAACGACGGCGACAGAGACGGCGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTTAAGGTACAGAGAGAAAAGAAAGAATAGAAGGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCGTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCAGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCCTGTTGA

Protein sequence

>MsaT000570.1

MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAALCISCDHDIHSANPLARRHERVPLTTFHHHNNNSQQQSFFSENDHDATNEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNGKTDTPEQNSPGTTADGVVPVQSQSKTTTEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTVAVPMTAVEREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC*