AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG000632


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000632 MtrunA17_Chr1g0149851 91.493 529 27 3 123 634 1 528 0.0 946
MsaG000632 MtrunA17_Chr1g0149841 64.943 522 102 13 123 589 1 496 0.0 574
MsaG000632 MtrunA17_Chr7g0275891 69.942 346 74 5 123 454 1 330 6.36e-154 447
MsaG000632 MtrunA17_Chr3g0137101 53.917 434 154 13 125 535 6 416 8.36e-132 402
MsaG000632 MtrunA17_Chr7g0275401 70.463 281 78 2 123 398 1 281 1.16e-121 363
MsaG000632 MtrunA17_Chr1g0149831 83.854 192 27 2 186 377 1 188 1.92e-95 293
MsaG000632 MtrunA17_Chr2g0304841 51.453 344 142 6 125 447 16 355 3.93e-95 307
MsaG000632 MtrunA17_Chr4g0067981 54.074 270 122 2 107 376 11 278 4.30e-86 283
MsaG000632 MtrunA17_Chr2g0294911 54.231 260 115 1 121 380 23 278 3.14e-83 274
MsaG000632 MtrunA17_Chr1g0161431 51.515 264 111 3 122 375 6 262 5.68e-81 268
MsaG000632 MtrunA17_Chr4g0074411 48.101 316 154 5 118 432 9 315 2.30e-80 266
MsaG000632 MtrunA17_Chr8g0376881 56.048 248 103 3 125 370 23 266 6.56e-80 263
MsaG000632 MtrunA17_Chr3g0123131 55.242 248 103 2 127 370 13 256 8.21e-80 264
MsaG000632 MtrunA17_Chr4g0074401 45.481 343 166 6 107 444 2 328 1.29e-78 261
MsaG000632 MtrunA17_Chr3g0134461 50.417 240 66 2 124 362 5 192 2.96e-61 202
MsaG000632 MtrunA17_Chr4g0074421 52.880 191 85 2 177 367 2 187 1.97e-56 189
MsaG000632 MtrunA17_Chr3g0134481 44.082 245 75 3 120 364 1 183 7.29e-51 174
MsaG000632 MtrunA17_Chr4g0009851 39.095 243 120 4 127 369 11 225 3.99e-49 174
MsaG000632 MtrunA17_Chr4g0009901 38.000 250 127 4 124 373 7 228 2.69e-46 165
MsaG000632 MtrunA17_Chr4g0009981 37.374 198 97 3 172 369 2 172 1.30e-35 135
MsaG000632 MtrunA17_Chr6g0471041 30.888 259 149 3 114 371 1 230 4.85e-33 132
MsaG000632 MtrunA17_Chr8g0391911 35.200 250 132 8 127 362 9 242 3.12e-30 119
MsaG000632 MtrunA17_Chr8g0350761 29.588 267 164 5 130 376 20 282 1.60e-26 113
MsaG000632 MtrunA17_Chr6g0473731 36.196 163 83 3 207 369 10 151 3.39e-24 106
MsaG000632 MtrunA17_Chr7g0275881 42.754 138 39 4 500 637 1 98 1.17e-22 94.0
MsaG000632 MtrunA17_Chr4g0031961 45.192 104 57 0 284 387 102 205 5.57e-22 97.4
MsaG000632 MtrunA17_Chr3g0127941 34.532 139 86 2 131 265 56 193 1.74e-21 99.4
MsaG000632 MtrunA17_Chr6g0456631 35.433 127 79 2 125 249 7 132 3.46e-21 91.3
MsaG000632 MtrunA17_Chr7g0276361 35.220 159 89 4 124 274 5 157 1.95e-20 95.5
MsaG000632 MtrunA17_Chr4g0011071 29.940 167 90 3 173 339 35 174 8.84e-20 87.4
MsaG000632 MtrunA17_Chr4g0009991 36.806 144 63 3 219 362 1 116 1.57e-19 85.1
MsaG000632 MtrunA17_Chr8g0383961 33.088 136 91 0 114 249 1 136 1.02e-18 86.7
MsaG000632 MtrunA17_Chr8g0345901 34.965 143 82 2 133 264 38 180 1.37e-18 90.1
MsaG000632 MtrunA17_Chr7g0255711 62.712 59 22 0 312 370 90 148 4.95e-18 85.5
MsaG000632 MtrunA17_Chr3g0091641 33.871 124 79 1 131 251 24 147 2.03e-17 86.3
MsaG000632 MtrunA17_Chr1g0181811 35.246 122 76 2 131 249 85 206 2.36e-17 86.3
MsaG000632 MtrunA17_Chr4g0030271 35.246 122 76 1 131 249 89 210 9.99e-17 84.3
MsaG000632 MtrunA17_Chr5g0423031 39.806 103 56 3 124 225 7 104 4.59e-16 76.6
MsaG000632 MtrunA17_Chr4g0061021 32.258 124 81 1 131 251 33 156 5.19e-16 81.6
MsaG000632 MtrunA17_Chr5g0400241 52.239 67 32 0 311 377 309 375 4.38e-15 78.6
MsaG000632 MtrunA17_Chr5g0400241 34.328 134 82 3 127 258 14 143 2.30e-11 66.6
MsaG000632 MtrunA17_Chr2g0324891 44.318 88 48 1 310 397 158 244 2.35e-14 75.9
MsaG000632 MtrunA17_Chr4g0054981 52.239 67 32 0 311 377 308 374 2.97e-14 75.9
MsaG000632 MtrunA17_Chr4g0040481 53.333 60 28 0 310 369 155 214 3.98e-14 75.1
MsaG000632 MtrunA17_Chr6g0469321 53.933 89 30 2 329 410 70 154 8.11e-14 70.1
MsaG000632 MtrunA17_Chr4g0010001 39.286 84 50 1 124 207 7 89 1.88e-12 63.5
MsaG000632 MtrunA17_Chr4g0059571 31.250 144 84 3 120 248 12 155 2.17e-12 67.0
MsaG000632 MtrunA17_Chr7g0256551 32.374 139 73 3 133 250 11 149 4.42e-12 66.6
MsaG000632 MtrunA17_Chr8g0352871 31.159 138 75 3 133 250 11 148 5.06e-12 65.1
MsaG000632 MtrunA17_Chr1g0190301 55.932 59 25 1 308 365 170 228 7.84e-12 67.8
MsaG000632 MtrunA17_Chr1g0198601 42.466 73 41 1 299 370 197 269 9.04e-12 67.4
MsaG000632 MtrunA17_Chr7g0274471 58.929 56 22 1 311 365 216 271 4.65e-11 65.5
MsaG000632 MtrunA17_Chr1g0175091 53.333 60 27 1 308 366 253 312 6.09e-11 65.1
MsaG000632 MtrunA17_Chr4g0062921 41.892 74 42 1 305 377 227 300 7.50e-11 64.7
MsaG000632 MtrunA17_Chr1g0175081 41.860 86 42 3 305 387 14 94 8.47e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000632 AT2G25180.1 57.742 310 122 5 125 431 11 314 8.01e-106 333
MsaG000632 AT4G31920.1 51.630 368 140 9 125 478 11 354 4.98e-101 319
MsaG000632 AT5G58080.1 47.912 407 146 14 125 509 12 374 1.78e-87 286
MsaG000632 AT3G16857.1 50.896 279 109 4 125 380 31 304 3.41e-82 273
MsaG000632 AT3G16857.2 50.179 279 111 3 125 380 31 304 6.27e-82 273
MsaG000632 AT1G67710.1 52.988 251 103 5 128 370 8 251 6.35e-71 239
MsaG000632 AT2G01760.1 48.881 268 129 4 123 383 3 269 6.01e-69 229
MsaG000632 AT3G16857.3 49.160 238 93 3 166 380 2 234 3.98e-65 226
MsaG000632 AT2G01760.2 44.257 296 129 5 123 383 3 297 4.13e-63 215
MsaG000632 AT5G49240.1 41.322 242 129 4 127 362 38 272 3.36e-50 176
MsaG000632 AT1G67710.2 51.295 193 79 5 186 370 1 186 1.01e-45 169
MsaG000632 AT3G62670.1 38.800 250 136 5 132 376 42 279 4.21e-43 161
MsaG000632 AT2G01760.3 46.341 205 102 4 186 383 1 204 2.43e-42 155
MsaG000632 AT1G49190.1 31.183 279 167 5 126 390 29 296 1.04e-35 139
MsaG000632 AT5G07210.2 31.164 292 154 6 129 382 14 296 2.15e-32 133
MsaG000632 AT1G67710.3 46.243 173 78 5 206 370 12 177 2.53e-32 130
MsaG000632 AT2G27070.1 30.000 300 150 7 129 382 14 299 2.33e-30 126
MsaG000632 AT5G07210.1 30.333 300 154 7 129 382 14 304 5.61e-30 125
MsaG000632 AT2G46790.3 39.024 123 70 2 131 249 37 158 5.51e-22 99.8
MsaG000632 AT2G46790.1 39.024 123 70 2 131 249 37 158 7.88e-22 99.8
MsaG000632 AT1G49190.2 38.400 125 77 0 126 250 29 153 2.05e-21 99.4
MsaG000632 AT5G59570.2 45.918 98 51 1 292 387 120 217 2.69e-20 92.4
MsaG000632 AT5G59570.1 45.918 98 51 1 292 387 120 217 2.69e-20 92.4
MsaG000632 AT3G46640.2 47.778 90 45 1 300 387 129 218 5.64e-20 92.0
MsaG000632 AT3G46640.1 47.778 90 45 1 300 387 129 218 5.64e-20 92.0
MsaG000632 AT3G46640.3 47.778 90 45 1 300 387 129 218 6.52e-20 91.7
MsaG000632 AT5G24470.1 36.719 128 76 2 129 252 48 174 6.80e-20 94.4
MsaG000632 AT2G40970.1 50.649 77 38 0 294 370 86 162 4.13e-19 87.8
MsaG000632 AT3G10760.1 50.575 87 43 0 312 398 104 190 8.48e-19 88.6
MsaG000632 AT5G60100.7 37.008 127 76 2 127 249 59 185 1.65e-18 89.0
MsaG000632 AT5G60100.6 37.008 127 76 2 127 249 59 185 1.65e-18 89.0
MsaG000632 AT5G60100.4 37.008 127 76 2 127 249 59 185 1.65e-18 89.0
MsaG000632 AT5G05090.1 54.286 70 32 0 301 370 69 138 1.70e-18 86.3
MsaG000632 AT5G60100.5 37.008 127 76 2 127 249 59 185 2.70e-18 89.0
MsaG000632 AT5G60100.3 37.008 127 76 2 127 249 59 185 2.70e-18 89.0
MsaG000632 AT5G60100.1 37.008 127 76 2 127 249 59 185 2.70e-18 89.0
MsaG000632 AT5G60100.2 37.008 127 76 2 127 249 59 185 4.72e-18 88.2
MsaG000632 AT5G61380.1 33.871 124 79 1 131 251 19 142 2.59e-17 86.3
MsaG000632 AT5G02810.1 35.246 122 76 1 131 249 78 199 3.28e-17 86.3
MsaG000632 AT5G44190.1 56.923 65 28 0 305 369 139 203 1.07e-16 83.2
MsaG000632 AT5G44190.2 56.923 65 28 0 305 369 139 203 1.08e-16 82.4
MsaG000632 AT2G20570.1 40.367 109 57 2 287 395 130 230 1.09e-14 77.0
MsaG000632 AT2G20570.2 46.914 81 38 1 315 395 171 246 1.27e-13 73.9
MsaG000632 AT4G18020.8 52.381 63 28 1 307 369 292 352 3.37e-12 69.7
MsaG000632 AT4G18020.11 52.381 63 28 1 307 369 292 352 3.37e-12 69.7
MsaG000632 AT4G18020.4 52.381 63 28 1 307 369 292 352 3.37e-12 69.7
MsaG000632 AT4G18020.5 52.381 63 28 1 307 369 292 352 3.37e-12 69.7
MsaG000632 AT4G18020.10 52.381 63 28 1 307 369 292 352 3.37e-12 69.7
MsaG000632 AT4G18020.7 52.381 63 28 1 307 369 292 352 3.37e-12 69.7
MsaG000632 AT4G18020.3 52.381 63 28 1 307 369 292 352 3.74e-12 69.7
MsaG000632 AT4G18020.2 52.381 63 28 1 307 369 292 352 3.74e-12 69.7
MsaG000632 AT4G18020.1 52.381 63 28 1 307 369 292 352 3.74e-12 69.7
MsaG000632 AT4G18020.6 52.381 63 28 1 307 369 292 352 3.74e-12 69.7
MsaG000632 AT4G18020.9 52.381 63 28 1 307 369 292 352 3.74e-12 69.7
MsaG000632 AT3G57040.2 28.395 162 94 2 133 272 11 172 9.49e-12 65.9
MsaG000632 AT3G57040.1 28.395 162 94 2 133 272 11 172 9.49e-12 65.9
MsaG000632 AT1G68670.1 37.624 101 59 2 296 392 198 298 1.66e-11 66.6
MsaG000632 AT1G59940.2 27.933 179 109 4 95 257 89 263 2.49e-11 65.9
MsaG000632 AT3G56380.2 31.298 131 76 2 131 247 20 150 3.55e-11 62.4
MsaG000632 AT1G25550.1 43.038 79 44 1 304 381 200 278 4.11e-11 65.5
MsaG000632 AT3G56380.1 31.538 130 76 2 131 247 20 149 6.30e-11 61.6
MsaG000632 AT3G25790.1 34.646 127 71 4 317 442 200 315 8.13e-11 64.7

Find 135 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAACATGTCTCAAGATTT+TGG 0.179210 1:-8336657 MsaT000632.1:CDS
GGAAGGTAAGAGTTTGTTTC+TGG 0.198817 1:+8334040 None:intergenic
AGCTAATATGGCCGAAGATT+TGG 0.235811 1:-8334434 MsaT000632.1:CDS
TTTAAGCTTCTTGAGCTTAT+TGG 0.242147 1:-8335882 MsaT000632.1:CDS
TTCGAAGCCGAAGGAAAATT+TGG 0.243246 1:-8338013 MsaT000632.1:CDS
ATTCCTTTCATCACCATCTT+TGG 0.253553 1:+8335720 None:intergenic
ACTCGACAGGTGATCATCTT+AGG 0.278334 1:-8334210 MsaT000632.1:CDS
GGCCAAGTTCAAGAGCAATT+TGG 0.297529 1:+8337873 None:intergenic
TGATGTCCCACCAGAGAAAT+TGG 0.298503 1:+8333489 None:intergenic
AATTTCCATCATGGTTGTTA+TGG 0.300876 1:+8333903 None:intergenic
TGTACCTCCTTCAATGTAAC+AGG 0.302320 1:+8335666 None:intergenic
CTTGCTGCTGTTAAACAATT+AGG 0.302670 1:-8335384 MsaT000632.1:CDS
ATGAATGATCAATTTCCTAT+TGG 0.313965 1:-8336707 MsaT000632.1:CDS
CCATTTCCACTATCAGAATT+AGG 0.318838 1:+8335582 None:intergenic
CCTAATTCTGATAGTGGAAA+TGG 0.330629 1:-8335582 MsaT000632.1:CDS
CACTTGATCCAATCTGTTTG+TGG 0.340924 1:+8338055 None:intergenic
GCTAATATGGCCGAAGATTT+GGG 0.348373 1:-8334433 MsaT000632.1:CDS
CTCCAAATTGCTCTTGAACT+TGG 0.351299 1:-8337875 MsaT000632.1:CDS
CATGTGGTTGGTAGTTCAAT+AGG 0.353197 1:-8333869 MsaT000632.1:CDS
GCATGGACAAAACCTTCTTT+TGG 0.354006 1:+8334019 None:intergenic
TGAAGGAGGTACAAATGATT+TGG 0.363320 1:-8335656 MsaT000632.1:CDS
TCTAATAATGTGCCATTTCA+AGG 0.366783 1:-8333938 MsaT000632.1:CDS
GTTGGAAAGAGGCAAACTTT+TGG 0.367278 1:-8338171 MsaT000632.1:CDS
TTCACAACATGAATCATAGA+AGG 0.379234 1:+8333845 None:intergenic
TCTTGAACTTGGCCTGAATC+AGG 0.380056 1:-8337864 MsaT000632.1:intron
TAGCCACATTCTCCCTTGTA+AGG 0.388290 1:+8334926 None:intergenic
GATATAACCCATTCTTGAAT+AGG 0.403697 1:+8334393 None:intergenic
AAAGAAGGTGCAATGACATT+TGG 0.412055 1:-8334084 MsaT000632.1:CDS
CAATTATATGCCAATTTCTC+TGG 0.412361 1:-8333499 MsaT000632.1:CDS
CTACTACTCATACCACTAGA+TGG 0.416526 1:+8334292 None:intergenic
AGAAGAAGCCTCGAGTTGTT+TGG 0.418038 1:-8335431 MsaT000632.1:CDS
TACCATGGTATTGACACCTT+TGG 0.419217 1:+8336624 None:intergenic
TTATTATTATGAAACTGTCT+AGG 0.422621 1:+8334334 None:intergenic
TATGAACATTGCTGATTACT+AGG 0.423694 1:+8335922 None:intergenic
TTATTATCCCATCCTTGAAA+TGG 0.424148 1:+8333926 None:intergenic
AGCTTAAACCCATCCATGTC+TGG 0.428879 1:+8335897 None:intergenic
AACTCTTACCTTCCAAAAGA+AGG 0.429300 1:-8334031 MsaT000632.1:CDS
GTTTCTGGTAATTGCAGCAT+AGG 0.430843 1:+8334055 None:intergenic
GTTTGTGGTTTAGACCAAAC+TGG 0.433803 1:+8338070 None:intergenic
GGTCTAAACCACAAACAGAT+TGG 0.437327 1:-8338063 MsaT000632.1:CDS
CACAATCTGATACTCCAGTT+TGG 0.441984 1:-8338084 MsaT000632.1:CDS
TGATAGATCCTATTCAAGAA+TGG 0.441988 1:-8334401 MsaT000632.1:CDS
GATAGATCCTATTCAAGAAT+GGG 0.444292 1:-8334400 MsaT000632.1:CDS
TTCAGATCCTTTCCATCTAG+TGG 0.445066 1:-8334304 MsaT000632.1:CDS
TCTTATCCAAGCTAACTCTA+TGG 0.447632 1:-8337957 MsaT000632.1:CDS
GCAAGAACACGCATTCCAAT+AGG 0.451965 1:+8336692 None:intergenic
TCTTTGAACATCATTCAGAT+TGG 0.469109 1:+8334165 None:intergenic
ATGAATAATCAGATGAAGGC+TGG 0.470466 1:-8333731 MsaT000632.1:CDS
ATGGGTTATATCAGTGGAGT+TGG 0.473556 1:-8334382 MsaT000632.1:CDS
GGGAAACATTCGGCTGGGAC+AGG 0.477461 1:-8335561 MsaT000632.1:CDS
GCTGAAACCTGTTACATTGA+AGG 0.477526 1:-8335673 MsaT000632.1:CDS
CTAATTCTGATAGTGGAAAT+GGG 0.482228 1:-8335581 MsaT000632.1:CDS
TGAGCTTATTGGACTTGAGA+TGG 0.484301 1:-8335871 MsaT000632.1:CDS
TTTCTGGTAATTGCAGCATA+GGG 0.484334 1:+8334056 None:intergenic
AGAATCATTACCCAAATCTT+CGG 0.485778 1:+8334423 None:intergenic
TGTGAGTTCATGTTATATGT+AGG 0.486197 1:+8333983 None:intergenic
GAAAGACCATAGAGTTAGCT+TGG 0.486599 1:+8337951 None:intergenic
GAATGCTATTGAAGGAAACT+TGG 0.492011 1:-8333825 MsaT000632.1:CDS
TGATTTGGCAACATGTAGTC+AGG 0.492304 1:-8335641 MsaT000632.1:CDS
TGATCATCTTAGGTTTCAAT+CGG 0.494786 1:-8334200 MsaT000632.1:CDS
CATGTTGTGAATGCTATTGA+AGG 0.494924 1:-8333833 MsaT000632.1:CDS
GTCCAATGCTATCTCGAAAA+CGG 0.497601 1:+8337981 None:intergenic
GATGCGCCTAATTCTGATAG+TGG 0.498616 1:-8335588 MsaT000632.1:CDS
TGAGAGTCTACAGAAGGAAA+TGG 0.499941 1:+8334139 None:intergenic
GCCAGTAGTGTTAATCTGCA+TGG 0.509822 1:-8334256 MsaT000632.1:CDS
TAGTGGAAATGGGAAACATT+CGG 0.510168 1:-8335571 MsaT000632.1:CDS
GGTTATATCAGTGGAGTTGG+TGG 0.511432 1:-8334379 MsaT000632.1:CDS
GGAAATGGGAAACATTCGGC+TGG 0.517134 1:-8335567 MsaT000632.1:CDS
GCCGAAGGAAAATTTGGTGT+TGG 0.519156 1:-8338007 MsaT000632.1:CDS
TGCACATGTTTATGCACTGC+AGG 0.520681 1:-8338207 MsaT000632.1:CDS
TACCATCCTTCTCATGTGGT+TGG 0.521062 1:-8333881 MsaT000632.1:CDS
GAAGAACGAAGATGATGATG+AGG 0.524981 1:-8335496 MsaT000632.1:CDS
TTGCATAACTTACTTATGAC+AGG 0.526242 1:+8335843 None:intergenic
TCCATGCAGATTAACACTAC+TGG 0.528713 1:+8334255 None:intergenic
AAGGATGGTAATTTCCATCA+TGG 0.529123 1:+8333894 None:intergenic
GCAGGTATGATACTGATTGT+TGG 0.530711 1:-8338189 MsaT000632.1:CDS
AATAACCATAACAACCATGA+TGG 0.531658 1:-8333908 MsaT000632.1:CDS
ATTCAGATTGGCGCGAGCTA+TGG 0.531857 1:+8334177 None:intergenic
TATTATTATGAAACTGTCTA+GGG 0.535599 1:+8334335 None:intergenic
TTCATATGCCAGACATGGAT+GGG 0.536690 1:-8335905 MsaT000632.1:CDS
TATGATGAATAATCAGATGA+AGG 0.541034 1:-8333735 MsaT000632.1:CDS
GAATGTGGCTAGCCATCTCC+AGG 0.545926 1:-8334914 MsaT000632.1:intron
GTTCATATGCCAGACATGGA+TGG 0.546140 1:-8335906 MsaT000632.1:CDS
ACCTCATGTGGTTTCAATGA+CGG 0.547065 1:+8333761 None:intergenic
TGATACTGATTGTTGGAAAG+AGG 0.548831 1:-8338182 MsaT000632.1:CDS
TAATGTGCCATTTCAAGGAT+GGG 0.550140 1:-8333933 MsaT000632.1:CDS
TTATATGCCAATTTCTCTGG+TGG 0.550617 1:-8333496 MsaT000632.1:CDS
GAGTTGTTCAAATTATGTGC+AGG 0.552747 1:+8334229 None:intergenic
CATAATTTGAACAACTCGAC+AGG 0.552801 1:-8334223 MsaT000632.1:CDS
TGGATGATGAAAACCTTACA+AGG 0.553288 1:-8334939 MsaT000632.1:CDS
GCAGCTGCAGTTGTAAAAGA+AGG 0.555599 1:+8337929 None:intergenic
CAAGTTCAAGAGCAATTTGG+AGG 0.556335 1:+8337876 None:intergenic
CAATGTTCATATGCCAGACA+TGG 0.556391 1:-8335910 MsaT000632.1:CDS
ATAATGTGCCATTTCAAGGA+TGG 0.556574 1:-8333934 MsaT000632.1:CDS
GGAAGAAGAAAACTAGCAAA+CGG 0.556828 1:-8335620 MsaT000632.1:CDS
TTCATCATATATACCTCATG+TGG 0.558721 1:+8333749 None:intergenic
TGATGATGAGGATGAGAATG+AGG 0.567738 1:-8335484 MsaT000632.1:CDS
CATGAGAGTCATGATCAAAC+CGG 0.571164 1:-8333666 MsaT000632.1:intron
TATATGCCAATTTCTCTGGT+GGG 0.573019 1:-8333495 MsaT000632.1:CDS
GAGTTCATGTTATATGTAGG+AGG 0.588472 1:+8333986 None:intergenic
ACTCATACCACTAGATGGAA+AGG 0.588967 1:+8334297 None:intergenic
GAACTACCAACCACATGAGA+AGG 0.589560 1:+8333875 None:intergenic
TGTTAGTGCACTTTGAGCAG+TGG 0.591132 1:+8335983 None:intergenic
AAACCTTACAAGGGAGAATG+TGG 0.595886 1:-8334929 MsaT000632.1:CDS
TCAAGAATGGGTTATATCAG+TGG 0.601175 1:-8334388 MsaT000632.1:CDS
TGCAGATTAACACTACTGGC+AGG 0.606997 1:+8334259 None:intergenic
GTGATGAAAGGAATTGATCA+TGG 0.607173 1:-8335711 MsaT000632.1:CDS
CAATTATTGTGATCGTATCG+CGG 0.612466 1:-8333798 MsaT000632.1:CDS
AAGTTCAAGAGCAATTTGGA+GGG 0.615313 1:+8337877 None:intergenic
TGCGAATGATGATCCAAAGA+TGG 0.615837 1:-8335733 MsaT000632.1:CDS
TGCATATTCTAATCTTGCCG+CGG 0.619450 1:+8333463 None:intergenic
GAAATGGGAAACATTCGGCT+GGG 0.620073 1:-8335566 MsaT000632.1:CDS
TAGGAGGCATAGCAGCAGCA+TGG 0.623883 1:+8334002 None:intergenic
GAATGTTGAGAGTCTACAGA+AGG 0.629708 1:+8334133 None:intergenic
AAATTACCATCCTTCTCATG+TGG 0.631597 1:-8333885 MsaT000632.1:CDS
GAAGCCTCGAGTTGTTTGGT+CGG 0.632069 1:-8335427 MsaT000632.1:CDS
TTGGAGGGCTTGTTGTATAG+CGG 0.635599 1:+8337892 None:intergenic
ACATGTTCTATCATCATCGA+CGG 0.636994 1:+8336670 None:intergenic
GATCCAAAGATGGTGATGAA+AGG 0.637771 1:-8335723 MsaT000632.1:CDS
TCACAACATGAATCATAGAA+GGG 0.643072 1:+8333846 None:intergenic
GTGCATCATCATTGAGATGG+TGG 0.647626 1:+8338104 None:intergenic
TACCAACCACATGAGAAGGA+TGG 0.647791 1:+8333879 None:intergenic
CTCCAAAGGTGTCAATACCA+TGG 0.650196 1:-8336626 MsaT000632.1:intron
AATCAAGCTCATTAGACATG+TGG 0.650925 1:+8333702 None:intergenic
TAACAGCAGCAAGAAACTTG+CGG 0.653136 1:+8335394 None:intergenic
TAATGAGCTTGATTCGCTCG+AGG 0.661321 1:-8333693 MsaT000632.1:CDS
TCGTGACAATGATGATTCGA+CGG 0.663799 1:-8335457 MsaT000632.1:CDS
ACATATAACATGAACTCACA+AGG 0.670292 1:-8333980 MsaT000632.1:CDS
CTGGTGGGACATCAATGCCG+CGG 0.675642 1:-8333480 MsaT000632.1:CDS
GGATGATGAAAACCTTACAA+GGG 0.676423 1:-8334938 MsaT000632.1:CDS
GAAACCTGTTACATTGAAGG+AGG 0.684192 1:-8335670 MsaT000632.1:CDS
TCAGCCGACCAAACAACTCG+AGG 0.687224 1:+8335423 None:intergenic
ATTGTGCATCATCATTGAGA+TGG 0.687657 1:+8338101 None:intergenic
AACTGTCTAGGGTCATTCAG+TGG 0.690957 1:+8334346 None:intergenic
TCCGTCATTGAAACCACATG+AGG 0.701079 1:-8333762 MsaT000632.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 8333471 8338230 8333471 ID=MsaG000632
Chr1 mRNA 8333471 8338230 8333471 ID=MsaT000632.1;Parent=MsaG000632
Chr1 exon 8333471 8333524 8333471 ID=MsaT000632.1.exon7;Parent=MsaT000632.1
Chr1 CDS 8333471 8333524 8333471 ID=cds.MsaT000632.1;Parent=MsaT000632.1
Chr1 exon 8333667 8334482 8333667 ID=MsaT000632.1.exon6;Parent=MsaT000632.1
Chr1 CDS 8333667 8334482 8333667 ID=cds.MsaT000632.1;Parent=MsaT000632.1
Chr1 exon 8334915 8334991 8334915 ID=MsaT000632.1.exon5;Parent=MsaT000632.1
Chr1 CDS 8334915 8334991 8334915 ID=cds.MsaT000632.1;Parent=MsaT000632.1
Chr1 exon 8335376 8335762 8335376 ID=MsaT000632.1.exon4;Parent=MsaT000632.1
Chr1 CDS 8335376 8335762 8335376 ID=cds.MsaT000632.1;Parent=MsaT000632.1
Chr1 exon 8335856 8336008 8335856 ID=MsaT000632.1.exon3;Parent=MsaT000632.1
Chr1 CDS 8335856 8336008 8335856 ID=cds.MsaT000632.1;Parent=MsaT000632.1
Chr1 exon 8336627 8336729 8336627 ID=MsaT000632.1.exon2;Parent=MsaT000632.1
Chr1 CDS 8336627 8336729 8336627 ID=cds.MsaT000632.1;Parent=MsaT000632.1
Chr1 exon 8337865 8338230 8337865 ID=MsaT000632.1.exon1;Parent=MsaT000632.1
Chr1 CDS 8337865 8338230 8337865 ID=cds.MsaT000632.1;Parent=MsaT000632.1
Gene Sequence

>MsaT000632.1

ATGCACATGTTTATGCACTGCAGGTATGATACTGATTGTTGGAAAGAGGCAAACTTTTGGGGCAAGATAGAGTCGTACGTGATGTCAAGCAGTAGTTTTTCATGCCACCATCTCAATGATGATGCACAATCTGATACTCCAGTTTGGTCTAAACCACAAACAGATTGGATCAAGTGTAACATTGATTGTGCCCTTTTCGAAGCCGAAGGAAAATTTGGTGTTGGCATCCGTTTTCGAGATAGCATTGGACATCTTATCCAAGCTAACTCTATGGTCTTTCCTTCTTTTACAACTGCAGCTGCTGAGTGTGCAGCTACCGCTATACAACAAGCCCTCCAAATTGCTCTTGAACTTGGCCTGAATCAGATGAATGATCAATTTCCTATTGGAATGCGTGTTCTTGCCGTCGATGATGATAGAACATGTCTCAAGATTTTGGAGAGACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAGTGCACTAACAGCACTGAACTTGTTGAGAGAAAATAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGGTTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAATGTTTTCTGCGAATGATGATCCAAAGATGGTGATGAAAGGAATTGATCATGGTGCTTGTGATTATCTGCTGAAACCTGTTACATTGAAGGAGGTACAAATGATTTGGCAACATGTAGTCAGGAAGAAGAAAACTAGCAAACGGAGCAATCTTGATGCGCCTAATTCTGATAGTGGAAATGGGAAACATTCGGCTGGGACAGGCAATTCTGATCAAATTGAAAAGCCATCTAGAAAAAGAAAGGAGAAGAACGAAGATGATGATGAGGATGAGAATGAGGATGATCGTGACAATGATGATTCGACGGCACAGAAGAAGCCTCGAGTTGTTTGGTCGGCTGACTTACACCGCAAGTTTCTTGCTGCTGTTAAACAATTAGGCTTTGAAAAGGCTGTGCCAAAAAAGATTCTTGACTTGATGGATGATGAAAACCTTACAAGGGAGAATGTGGCTAGCCATCTCCAGAAATACAGACTCTATCTGAAAAAACAAGCTAATATGGCCGAAGATTTGGGTAATGATTCTGATAGATCCTATTCAAGAATGGGTTATATCAGTGGAGTTGGTGGACATGTGCAGCCACTGAATGACCCTAGACAGTTTCATAATAATAACAGTGCTTTCAGATCCTTTCCATCTAGTGGTATGAGTAGTAGATTGTACACTCCTGCCAGTAGTGTTAATCTGCATGGATTTCCTGCACATAATTTGAACAACTCGACAGGTGATCATCTTAGGTTTCAATCGGCCATAGCTCGCGCCAATCTGAATGATGTTCAAAGAATGCCATTTCCTTCTGTAGACTCTCAACATTCACAGTTTTCTCATCCTTTACTTGAAAAAAGAAGGTGCAATGACATTTGGTCAAGCCCTATGCTGCAATTACCAGAAACAAACTCTTACCTTCCAAAAGAAGGTTTTGTCCATGCTGCTGCTATGCCTCCTACATATAACATGAACTCACAAGGTATTATTTTTAACAGCAGTTCTAATAATGTGCCATTTCAAGGATGGGATAATAACCATAACAACCATGATGGAAATTACCATCCTTCTCATGTGGTTGGTAGTTCAATAGGCCCTTCTATGATTCATGTTGTGAATGCTATTGAAGGAAACTTGGACAACAATTATTGTGATCGTATCGCGGAGTTACATGAAGTTCCGTCATTGAAACCACATGAGGTATATATGATGAATAATCAGATGAAGGCTGGAAATAGCCACATGTCTAATGAGCTTGATTCGCTCGAGGACGTCATGAGAGTCATGATCAAACCGAAACAATTATATGCCAATTTCTCTGGTGGGACATCAATGCCGCGGCAAGATTAG

Protein sequence

>MsaT000632.1

MHMFMHCRYDTDCWKEANFWGKIESYVMSSSSFSCHHLNDDAQSDTPVWSKPQTDWIKCNIDCALFEAEGKFGVGIRFRDSIGHLIQANSMVFPSFTTAAAECAATAIQQALQIALELGLNQMNDQFPIGMRVLAVDDDRTCLKILERLLQRCQYHVTTAQSALTALNLLRENKSNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGIDHGACDYLLKPVTLKEVQMIWQHVVRKKKTSKRSNLDAPNSDSGNGKHSAGTGNSDQIEKPSRKRKEKNEDDDEDENEDDRDNDDSTAQKKPRVVWSADLHRKFLAAVKQLGFEKAVPKKILDLMDDENLTRENVASHLQKYRLYLKKQANMAEDLGNDSDRSYSRMGYISGVGGHVQPLNDPRQFHNNNSAFRSFPSSGMSSRLYTPASSVNLHGFPAHNLNNSTGDHLRFQSAIARANLNDVQRMPFPSVDSQHSQFSHPLLEKRRCNDIWSSPMLQLPETNSYLPKEGFVHAAAMPPTYNMNSQGIIFNSSSNNVPFQGWDNNHNNHDGNYHPSHVVGSSIGPSMIHVVNAIEGNLDNNYCDRIAELHEVPSLKPHEVYMMNNQMKAGNSHMSNELDSLEDVMRVMIKPKQLYANFSGGTSMPRQD*