AlfalfaGEDB | MsaG000635

M. sativa ssp. caerulea / MsaG000635

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000635	KEH39870.1	96.310	271	10	0	1	271	1	271	1.27e-166	482

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000635	sp\|Q6H805\|ORR24_ORYSJ	62.633	281	91	3	3	275	23	297	3.44e-118	355

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000635	tr\|A0A072VP36\|A0A072VP36_MEDTR	96.310	271	10	0	1	271	1	271	6.09e-167	482

TFs/TRs:

Gene ID	Type	Classification
MsaG000635	TF	GARP-ARR-B

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001730	MsaG000635	0.808728	4.576245e-50	7.579191e-48
MsaG003422	MsaG000635	0.802903	7.564738e-49	1.092480e-46
MsaG005017	MsaG000635	0.816759	8.140553e-52	1.645675e-49
MsaG005410	MsaG000635	0.812011	9.024713e-51	1.618859e-48
MsaG005496	MsaG000635	0.807524	8.235347e-50	1.324964e-47
MsaG005603	MsaG000635	0.804596	3.379429e-49	5.075510e-47
MsaG006468	MsaG000635	0.814431	2.670898e-51	5.089703e-49
MsaG006555	MsaG000635	0.819005	2.546176e-52	5.455075e-50
MsaG007615	MsaG000635	0.800811	2.024092e-48	2.787314e-46
MsaG007817	MsaG000635	0.820108	1.430085e-52	3.154392e-50
MsaG007828	MsaG000635	0.813011	5.468002e-51	1.005547e-48
MsaG008234	MsaG000635	0.839374	3.035970e-57	1.162056e-54
MsaG009389	MsaG000635	0.816725	8.286138e-52	1.673573e-49
MsaG011600	MsaG000635	0.819310	2.172069e-52	4.691045e-50
MsaG043788	MsaG000635	0.836285	1.870959e-56	6.513580e-54
MsaG047069	MsaG000635	0.828334	1.704012e-54	4.703737e-52
MsaG001966	MsaG000635	0.806842	1.146769e-49	1.815347e-47
MsaG000635	MsaG014827	0.806552	1.319557e-49	2.074742e-47
MsaG000635	MsaG013252	0.801507	1.460658e-48	2.043292e-46
MsaG000635	MsaG013496	0.816480	9.394813e-52	1.885617e-49
MsaG000635	MsaG030607	0.845004	9.975245e-59	4.572022e-56
MsaG000635	MsaG030007	0.801958	1.181528e-48	1.669861e-46
MsaG000635	MsaG036233	0.816681	8.472784e-52	1.709374e-49
MsaG013839	MsaG000635	0.829874	7.245606e-55	2.089420e-52
MsaG014855	MsaG000635	0.802688	8.371850e-49	1.203123e-46
MsaG016215	MsaG000635	0.804840	3.007076e-49	4.542104e-47
MsaG017189	MsaG000635	0.810134	2.291891e-50	3.926609e-48
MsaG017324	MsaG000635	0.814550	2.514071e-51	4.805009e-49
MsaG017495	MsaG000635	0.804317	3.862661e-49	5.763960e-47
MsaG019267	MsaG000635	0.803735	5.095410e-49	7.501888e-47
MsaG019977	MsaG000635	0.803226	6.491351e-49	9.444922e-47
MsaG020598	MsaG000635	0.812078	8.724593e-51	1.567576e-48
MsaG024295	MsaG000635	0.804110	4.262227e-49	6.330091e-47
MsaG027987	MsaG000635	0.866236	6.628013e-65	6.580297e-62
MsaG029141	MsaG000635	0.844235	1.603297e-58	7.164225e-56
MsaG029204	MsaG000635	0.822004	5.256381e-53	1.219134e-50
MsaG029402	MsaG000635	0.826293	5.227970e-54	1.363014e-51
MsaG033051	MsaG000635	0.842876	3.685949e-58	1.576417e-55
MsaG035151	MsaG000635	0.818698	2.986829e-52	6.347785e-50
MsaG041800	MsaG000635	0.806572	1.307058e-49	2.056085e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000635	MtrunA17_Chr1g0149841	96.310	271	10	0	1	271	1	271	1.17e-170	482
MsaG000635	MtrunA17_Chr7g0275891	71.711	304	70	4	1	289	1	303	3.55e-140	399
MsaG000635	MtrunA17_Chr1g0149851	76.224	286	46	2	1	271	1	279	7.96e-140	405
MsaG000635	MtrunA17_Chr1g0149831	90.213	235	18	2	64	298	1	230	2.16e-134	380
MsaG000635	MtrunA17_Chr7g0275401	72.059	272	72	2	1	271	1	269	7.08e-129	368
MsaG000635	MtrunA17_Chr3g0137101	69.091	275	78	3	2	271	5	277	3.29e-123	366
MsaG000635	MtrunA17_Chr2g0304841	58.696	276	102	3	3	269	16	288	2.10e-98	303
MsaG000635	MtrunA17_Chr4g0067981	53.169	284	100	4	2	271	28	292	3.05e-95	295
MsaG000635	MtrunA17_Chr2g0294911	49.825	285	119	2	1	275	25	295	7.55e-93	287
MsaG000635	MtrunA17_Chr1g0161431	53.846	260	115	2	4	259	10	268	3.81e-91	283
MsaG000635	MtrunA17_Chr4g0074411	56.371	259	106	3	5	263	18	269	5.44e-89	277
MsaG000635	MtrunA17_Chr8g0376881	56.863	255	106	2	3	256	23	274	1.22e-88	274
MsaG000635	MtrunA17_Chr4g0074401	52.985	268	124	2	5	271	17	283	2.76e-86	270
MsaG000635	MtrunA17_Chr3g0123131	51.254	279	127	3	5	279	13	286	8.17e-85	265
MsaG000635	MtrunA17_Chr3g0134461	53.750	240	58	2	2	240	5	192	5.04e-71	218
MsaG000635	MtrunA17_Chr4g0074421	57.292	192	75	3	55	245	2	187	9.63e-66	204
MsaG000635	MtrunA17_Chr4g0009851	38.406	276	139	5	5	279	11	256	5.85e-57	186
MsaG000635	MtrunA17_Chr3g0134481	46.058	241	68	3	2	242	5	183	7.57e-56	179
MsaG000635	MtrunA17_Chr4g0009901	37.407	270	140	5	2	271	7	247	1.90e-50	167
MsaG000635	MtrunA17_Chr4g0009981	37.229	231	115	5	50	279	2	203	6.81e-42	145
MsaG000635	MtrunA17_Chr6g0471041	33.878	245	132	3	4	247	13	228	6.03e-38	139
MsaG000635	MtrunA17_Chr8g0391911	33.840	263	138	7	5	250	9	252	1.03e-32	121
MsaG000635	MtrunA17_Chr8g0350761	30.040	253	159	5	8	243	20	271	5.61e-29	115
MsaG000635	MtrunA17_Chr6g0473731	33.889	180	93	4	85	264	10	163	4.16e-25	104
MsaG000635	MtrunA17_Chr4g0031961	47.788	113	53	2	156	262	94	206	2.23e-23	97.4
MsaG000635	MtrunA17_Chr3g0127941	34.532	139	86	2	9	143	56	193	2.70e-23	99.8
MsaG000635	MtrunA17_Chr6g0456631	36.434	129	79	2	1	127	5	132	3.10e-23	94.0
MsaG000635	MtrunA17_Chr4g0011071	32.530	166	85	3	52	217	36	174	8.11e-23	92.8
MsaG000635	MtrunA17_Chr8g0345901	34.524	168	96	3	11	164	38	205	9.64e-23	98.2
MsaG000635	MtrunA17_Chr4g0009991	36.806	144	63	2	97	240	1	116	6.25e-22	89.0
MsaG000635	MtrunA17_Chr7g0276361	35.484	155	85	4	2	144	5	156	1.37e-21	94.7
MsaG000635	MtrunA17_Chr6g0469321	77.358	53	12	0	207	259	70	122	2.58e-21	89.0
MsaG000635	MtrunA17_Chr7g0255711	53.846	78	36	0	172	249	72	149	2.16e-20	89.0
MsaG000635	MtrunA17_Chr1g0181811	36.885	122	74	2	9	127	85	206	3.55e-20	90.9
MsaG000635	MtrunA17_Chr4g0030271	36.885	122	74	1	9	127	89	210	7.69e-20	89.7
MsaG000635	MtrunA17_Chr7g0223971	29.358	218	91	4	88	265	2	196	8.35e-20	89.4
MsaG000635	MtrunA17_Chr8g0383961	35.484	124	80	0	4	127	13	136	9.44e-20	86.7
MsaG000635	MtrunA17_Chr3g0091641	33.871	124	79	1	9	129	24	147	8.39e-19	86.7
MsaG000635	MtrunA17_Chr5g0400241	52.703	74	34	1	184	256	304	377	2.18e-17	82.4
MsaG000635	MtrunA17_Chr5g0400241	35.200	125	75	3	5	127	14	134	1.57e-12	67.8
MsaG000635	MtrunA17_Chr4g0061021	32.258	124	81	1	9	129	33	156	3.00e-17	82.0
MsaG000635	MtrunA17_Chr5g0423031	38.835	103	57	3	2	103	7	104	6.71e-17	77.0
MsaG000635	MtrunA17_Chr4g0054981	55.072	69	30	1	189	256	308	376	1.87e-16	79.3
MsaG000635	MtrunA17_Chr4g0054981	32.258	124	80	2	5	127	14	134	3.28e-11	63.5
MsaG000635	MtrunA17_Chr4g0040481	55.357	56	25	0	188	243	155	210	2.54e-15	75.9
MsaG000635	MtrunA17_Chr2g0324891	55.357	56	25	0	188	243	158	213	6.13e-15	74.7
MsaG000635	MtrunA17_Chr1g0198601	41.379	87	50	1	177	262	197	283	3.10e-14	72.4
MsaG000635	MtrunA17_Chr4g0062921	52.857	70	31	2	182	250	227	295	4.79e-14	72.0
MsaG000635	MtrunA17_Chr7g0274471	64.286	56	19	1	189	243	216	271	2.03e-13	70.1
MsaG000635	MtrunA17_Chr4g0045361	50.000	68	33	1	186	252	269	336	2.29e-13	70.1
MsaG000635	MtrunA17_Chr1g0190301	60.345	58	22	1	187	243	171	228	2.71e-13	69.7
MsaG000635	MtrunA17_Chr4g0010001	38.095	84	51	1	2	85	7	89	6.30e-13	63.5
MsaG000635	MtrunA17_Chr7g0261911	52.941	68	31	1	187	253	258	325	6.30e-13	68.9
MsaG000635	MtrunA17_Chr5g0422621	43.590	78	43	1	172	248	179	256	1.24e-12	67.4
MsaG000635	MtrunA17_Chr1g0197171	55.932	59	25	1	187	244	40	98	2.12e-12	66.2
MsaG000635	MtrunA17_Chr5g0402631	50.794	63	30	1	188	249	211	273	2.43e-12	66.6
MsaG000635	MtrunA17_Chr3g0128691	35.385	130	63	5	11	122	20	146	3.22e-12	63.5
MsaG000635	MtrunA17_Chr2g0321461	54.545	55	24	1	191	244	45	99	5.70e-12	65.9
MsaG000635	MtrunA17_Chr6g0461641	54.545	55	24	1	191	244	42	96	5.78e-12	65.9
MsaG000635	MtrunA17_Chr7g0256551	30.216	139	76	3	11	128	11	149	7.97e-12	63.9
MsaG000635	MtrunA17_Chr8g0352871	28.986	138	78	3	11	128	11	148	1.24e-11	62.4
MsaG000635	MtrunA17_Chr5g0409731	56.364	55	23	1	191	244	25	79	1.34e-11	63.9
MsaG000635	MtrunA17_Chr4g0059571	30.000	130	79	2	9	126	26	155	2.49e-11	62.0
MsaG000635	MtrunA17_Chr5g0417521	50.909	55	26	1	191	244	15	69	3.97e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000635	AT2G25180.1	63.953	258	87	3	3	259	11	263	2.25e-106	322
MsaG000635	AT4G31920.1	58.803	284	95	5	3	285	11	273	1.82e-102	310
MsaG000635	AT3G16857.1	49.477	287	127	2	3	271	31	317	5.71e-91	284
MsaG000635	AT3G16857.2	49.477	287	127	2	3	271	31	317	1.01e-90	284
MsaG000635	AT5G58080.1	55.396	278	98	5	3	271	12	272	7.36e-84	265
MsaG000635	AT1G67710.1	54.150	253	109	3	6	254	8	257	4.29e-80	252
MsaG000635	AT2G01760.1	47.138	297	138	5	1	282	3	295	4.51e-79	245
MsaG000635	AT3G16857.3	48.780	246	108	2	44	271	2	247	8.36e-74	238
MsaG000635	AT2G01760.2	43.077	325	138	6	1	282	3	323	4.83e-73	230
MsaG000635	AT1G67710.2	52.308	195	86	3	64	254	1	192	1.03e-53	181
MsaG000635	AT5G49240.1	38.819	237	142	2	5	240	38	272	1.08e-50	169
MsaG000635	AT2G01760.3	44.017	234	112	5	64	282	1	230	3.45e-50	169
MsaG000635	AT3G62670.1	34.628	309	159	9	10	292	42	333	1.17e-46	162
MsaG000635	AT1G67710.3	46.857	175	86	3	84	254	12	183	8.00e-39	142
MsaG000635	AT1G49190.1	31.206	282	175	4	4	274	29	302	2.05e-35	132
MsaG000635	AT5G07210.2	31.047	277	149	7	7	250	14	281	3.68e-33	128
MsaG000635	AT5G07210.1	30.175	285	149	8	7	250	14	289	1.44e-30	121
MsaG000635	AT2G27070.1	29.577	284	145	7	7	249	14	283	2.53e-28	114
MsaG000635	AT2G46790.3	39.837	123	69	2	9	127	37	158	5.33e-25	104
MsaG000635	AT2G46790.1	39.837	123	69	2	9	127	37	158	5.39e-25	104
MsaG000635	AT5G59570.2	48.214	112	50	2	170	278	120	226	9.81e-24	98.6
MsaG000635	AT5G59570.1	48.214	112	50	2	170	278	120	226	9.81e-24	98.6
MsaG000635	AT1G49190.2	37.600	125	78	0	4	128	29	153	1.60e-23	100
MsaG000635	AT2G40970.1	41.525	118	69	0	167	284	81	198	1.76e-23	97.1
MsaG000635	AT5G24470.1	36.719	128	76	2	7	130	48	174	2.26e-22	97.4
MsaG000635	AT3G46640.3	36.420	162	83	4	104	249	45	202	4.37e-22	94.7
MsaG000635	AT3G46640.2	37.107	159	86	4	104	249	45	202	4.53e-22	94.4
MsaG000635	AT3G46640.1	37.107	159	86	4	104	249	45	202	4.53e-22	94.4
MsaG000635	AT5G02810.1	38.525	122	72	1	9	127	78	199	2.80e-21	94.4
MsaG000635	AT5G05090.1	53.165	79	37	0	171	249	61	139	9.47e-21	89.7
MsaG000635	AT1G68210.1	25.632	277	177	3	9	257	13	288	1.23e-20	92.4
MsaG000635	AT5G60100.7	37.795	127	75	2	5	127	59	185	1.37e-20	91.3
MsaG000635	AT5G60100.6	37.795	127	75	2	5	127	59	185	1.37e-20	91.3
MsaG000635	AT5G60100.4	37.795	127	75	2	5	127	59	185	1.37e-20	91.3
MsaG000635	AT5G60100.5	37.795	127	75	2	5	127	59	185	1.47e-20	92.0
MsaG000635	AT5G60100.3	37.795	127	75	2	5	127	59	185	1.47e-20	92.0
MsaG000635	AT5G60100.1	37.795	127	75	2	5	127	59	185	1.47e-20	92.0
MsaG000635	AT5G60100.2	37.795	127	75	2	5	127	59	185	2.40e-20	91.3
MsaG000635	AT3G10760.1	65.000	60	21	0	190	249	104	163	2.44e-20	89.7
MsaG000635	AT5G44190.1	40.984	122	64	3	183	298	139	258	6.96e-19	86.3
MsaG000635	AT5G61380.1	33.871	124	79	1	9	129	19	142	7.86e-19	87.0
MsaG000635	AT5G44190.2	40.984	122	64	3	183	298	139	258	8.10e-19	85.9
MsaG000635	AT2G20570.1	44.330	97	43	1	153	249	126	211	1.92e-16	79.3
MsaG000635	AT2G20570.2	61.111	54	21	0	196	249	174	227	4.43e-15	75.5
MsaG000635	AT4G18020.8	55.932	59	26	0	196	254	301	359	1.25e-14	74.3
MsaG000635	AT4G18020.11	55.932	59	26	0	196	254	301	359	1.25e-14	74.3
MsaG000635	AT4G18020.4	55.932	59	26	0	196	254	301	359	1.25e-14	74.3
MsaG000635	AT4G18020.5	55.932	59	26	0	196	254	301	359	1.25e-14	74.3
MsaG000635	AT4G18020.10	55.932	59	26	0	196	254	301	359	1.25e-14	74.3
MsaG000635	AT4G18020.7	55.932	59	26	0	196	254	301	359	1.25e-14	74.3
MsaG000635	AT4G18020.3	55.932	59	26	0	196	254	301	359	1.40e-14	74.3
MsaG000635	AT4G18020.2	55.932	59	26	0	196	254	301	359	1.40e-14	74.3
MsaG000635	AT4G18020.1	55.932	59	26	0	196	254	301	359	1.40e-14	74.3
MsaG000635	AT4G18020.6	55.932	59	26	0	196	254	301	359	1.40e-14	74.3
MsaG000635	AT4G18020.9	55.932	59	26	0	196	254	301	359	1.40e-14	74.3
MsaG000635	AT2G03500.1	53.125	64	29	1	188	250	230	293	2.90e-13	70.1
MsaG000635	AT3G57040.2	28.395	162	94	2	11	150	11	172	9.29e-13	67.0
MsaG000635	AT3G57040.1	28.395	162	94	2	11	150	11	172	9.29e-13	67.0
MsaG000635	AT5G45580.2	43.182	88	47	2	181	265	11	98	3.96e-12	65.9
MsaG000635	AT3G04030.1	54.545	55	24	1	191	244	45	99	6.90e-12	65.9
MsaG000635	AT3G04030.3	54.545	55	24	1	191	244	45	99	7.55e-12	65.9
MsaG000635	AT3G56380.2	31.298	131	76	2	9	125	20	150	7.97e-12	62.8
MsaG000635	AT5G45580.1	44.737	76	41	1	191	265	7	82	1.07e-11	64.3
MsaG000635	AT3G04030.2	51.852	54	26	0	191	244	45	98	1.10e-11	65.1
MsaG000635	AT1G25550.1	51.667	60	28	1	190	248	208	267	1.25e-11	64.7
MsaG000635	AT3G56380.1	31.538	130	76	2	9	125	20	149	1.58e-11	62.0
MsaG000635	AT4G13640.1	39.048	105	54	3	187	281	33	137	2.13e-11	63.9
MsaG000635	AT4G13640.2	39.048	105	54	3	187	281	33	137	2.17e-11	63.9
MsaG000635	AT1G13300.1	47.692	65	33	1	185	248	175	239	2.45e-11	63.9
MsaG000635	AT3G24120.1	51.613	62	29	1	187	247	37	98	2.53e-11	63.5
MsaG000635	AT3G24120.2	51.613	62	29	1	187	247	37	98	2.58e-11	63.5
MsaG000635	AT2G40670.2	32.331	133	74	2	9	125	29	161	2.73e-11	61.6
MsaG000635	AT1G49560.1	45.833	72	38	1	186	256	187	258	4.42e-11	63.2
MsaG000635	AT4G37180.1	49.180	61	30	1	189	248	208	268	5.19e-11	63.2
MsaG000635	AT2G40670.1	32.576	132	74	2	9	125	29	160	5.82e-11	60.5
MsaG000635	AT4G37180.2	49.180	61	30	1	189	248	215	275	6.83e-11	62.8

Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGAACATGTCTCAAGATTT+TGG	0.179210	1:-8353845	MsaT000635.1:CDS
ATTCCTTTCATCACCATCTT+TGG	0.256348	1:+8352995	None:intergenic
CCATTTCCACTATCAGAATT+AGG	0.318838	1:+8352857	None:intergenic
ATATGTGAGACTGAGAAGTA+TGG	0.327860	1:+8351921	None:intergenic
ATGAATGATCAGTTTCCTAT+TGG	0.330551	1:-8353895	MsaT000635.1:CDS
CCTAATTCTGATAGTGGAAA+TGG	0.330629	1:-8352857	MsaT000635.1:CDS
TTTAAGCTTCTTGAGCTTGT+TGG	0.375182	1:-8353150	MsaT000635.1:CDS
AAAGGTGGCCAGCCATCTTC+AGG	0.376644	1:-8352367	MsaT000635.1:intron
ACATGGTGCGTGTGATTATC+TGG	0.387305	1:-8352969	MsaT000635.1:CDS
TAAAAGAGGTACAGATCATT+TGG	0.388547	1:-8352931	MsaT000635.1:CDS
TATGAACATTGCTGATTACT+AGG	0.423694	1:+8353190	None:intergenic
TACCATGGTATTGACACCTT+TGG	0.431203	1:+8353812	None:intergenic
AGAATGTCACTGGGAAAGAT+TGG	0.434197	1:+8351955	None:intergenic
TCATTTGGCAGCATGTAATC+AGG	0.452747	1:-8352916	MsaT000635.1:CDS
GACGCGCCTAATTCTGATAG+TGG	0.455329	1:-8352863	MsaT000635.1:CDS
AGAAGAAGCCTCGAACTGTT+TGG	0.455763	1:-8352706	MsaT000635.1:CDS
TGAGCTTGTTGGACTTGAGA+TGG	0.457732	1:-8353139	MsaT000635.1:CDS
GCAAGAACTCGCATTCCAAT+AGG	0.458411	1:+8353880	None:intergenic
AGCTTAAATCCATCCATGTC+TGG	0.471845	1:+8353165	None:intergenic
GTTGTTGCGGTCAATCAATT+AGG	0.476132	1:-8352659	MsaT000635.1:CDS
GGGAAAGATTCGGCTGGGAC+AGG	0.479650	1:-8352836	MsaT000635.1:CDS
CTAATTCTGATAGTGGAAAT+GGG	0.482228	1:-8352856	MsaT000635.1:CDS
TGAAAATCTGACAAGGGAAA+AGG	0.489796	1:-8352385	MsaT000635.1:CDS
TAGCTAAGGCTGCTTCCATA+TGG	0.490232	1:+8352009	None:intergenic
CACTGCTCAAAACGCGATAA+CGG	0.499559	1:-8353250	MsaT000635.1:CDS
TAGTGGAAATGGGAAAGATT+CGG	0.502507	1:-8352846	MsaT000635.1:CDS
GTCAATCAATTAGGCATTGA+CGG	0.502566	1:-8352650	MsaT000635.1:intron
GGGTGGGAAAAGAATGTCAC+TGG	0.506615	1:+8351945	None:intergenic
AGCATAAAAGTACCTGAAGA+TGG	0.509866	1:+8352355	None:intergenic
ACATCGCAAGTTTGTTGTTG+CGG	0.516543	1:-8352672	MsaT000635.1:CDS
TATGTGAGACTGAGAAGTAT+GGG	0.518755	1:+8351922	None:intergenic
GAAACCTGTTAGACTAAAAG+AGG	0.521944	1:-8352945	MsaT000635.1:CDS
TGACAGTGAGGAAGAAAATG+AGG	0.529313	1:-8352759	MsaT000635.1:CDS
GGAAATGGGAAAGATTCGGC+TGG	0.530128	1:-8352842	MsaT000635.1:CDS
TGCATCTGAACTACTAGCTA+AGG	0.539318	1:+8351995	None:intergenic
TATTGGAATGCGAGTTCTTG+CGG	0.540178	1:-8353878	MsaT000635.1:CDS
TTGTATAACTTACTTATGAC+AGG	0.544810	1:+8353111	None:intergenic
TAAAAGTACCTGAAGATGGC+TGG	0.546379	1:+8352359	None:intergenic
TCAGTGGACCAAACAGTTCG+AGG	0.556377	1:+8352698	None:intergenic
CAATGTTCATATGCCAGACA+TGG	0.556391	1:-8353178	MsaT000635.1:CDS
AGATTGGCTGCTGAGTTGAT+AGG	0.561182	1:+8351971	None:intergenic
TAAGAATGAAGATGACAGTG+AGG	0.570920	1:-8352771	MsaT000635.1:CDS
GGAAGACAGACAAGACCATA+TGG	0.582020	1:-8352024	MsaT000635.1:CDS
GTTCATATGCCAGACATGGA+TGG	0.584384	1:-8353174	MsaT000635.1:CDS
ATGTGAGACTGAGAAGTATG+GGG	0.595182	1:+8351923	None:intergenic
TGCGAATGATGATCCAAAGA+TGG	0.615837	1:-8353008	MsaT000635.1:CDS
GGTCTTGTCTGTCTTCCGCA+CGG	0.622559	1:+8352030	None:intergenic
GAAATGGGAAAGATTCGGCT+GGG	0.627002	1:-8352841	MsaT000635.1:CDS
AAATCTGACAAGGGAAAAGG+TGG	0.629315	1:-8352382	MsaT000635.1:CDS
GATCCAAAGATGGTGATGAA+AGG	0.637771	1:-8352998	MsaT000635.1:CDS
ATAACTTACTTATGACAGGT+AGG	0.639228	1:+8353115	None:intergenic
TGTGAGACTGAGAAGTATGG+GGG	0.643481	1:+8351924	None:intergenic
CTCCAAAGGTGTCAATACCA+TGG	0.650196	1:-8353814	MsaT000635.1:intron
AAACTTGCGATGTAAATCAG+TGG	0.662856	1:+8352682	None:intergenic
GTGAGACTGAGAAGTATGGG+GGG	0.686210	1:+8351925	None:intergenic
GAATGTTGAAAATCTGACAA+GGG	0.692411	1:-8352391	MsaT000635.1:CDS
TGAATGTTGAAAATCTGACA+AGG	0.698854	1:-8352392	MsaT000635.1:CDS
GGTGGGAAAAGAATGTCACT+GGG	0.701317	1:+8351946	None:intergenic
GTGATGAAAGGAATTGAACA+TGG	0.742148	1:-8352986	MsaT000635.1:CDS
TCTACAAAGAATTAGCCGTG+CGG	0.798557	1:-8352045	MsaT000635.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	8351905	8353917	8351905	ID=MsaG000635
Chr1	mRNA	8351905	8353917	8351905	ID=MsaT000635.1;Parent=MsaG000635
Chr1	exon	8351905	8352081	8351905	ID=MsaT000635.1.exon5;Parent=MsaT000635.1
Chr1	CDS	8351905	8352081	8351905	ID=cds.MsaT000635.1;Parent=MsaT000635.1
Chr1	exon	8352368	8352444	8352368	ID=MsaT000635.1.exon4;Parent=MsaT000635.1
Chr1	CDS	8352368	8352444	8352368	ID=cds.MsaT000635.1;Parent=MsaT000635.1
Chr1	exon	8352651	8353037	8352651	ID=MsaT000635.1.exon3;Parent=MsaT000635.1
Chr1	CDS	8352651	8353037	8352651	ID=cds.MsaT000635.1;Parent=MsaT000635.1
Chr1	exon	8353124	8353276	8353124	ID=MsaT000635.1.exon2;Parent=MsaT000635.1
Chr1	CDS	8353124	8353276	8353124	ID=cds.MsaT000635.1;Parent=MsaT000635.1
Chr1	exon	8353815	8353917	8353815	ID=MsaT000635.1.exon1;Parent=MsaT000635.1
Chr1	CDS	8353815	8353917	8353815	ID=cds.MsaT000635.1;Parent=MsaT000635.1

Gene Sequence

>MsaT000635.1

ATGAATGATCAGTTTCCTATTGGAATGCGAGTTCTTGCGGTTGATGATGATAGAACATGTCTCAAGATTTTGGAGAAACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAACGCGATAACGGCGTTGAACTTGTTGAGAGAAAACAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGCGAATGATGATCCAAAGATGGTGATGAAAGGAATTGAACATGGTGCGTGTGATTATCTGGTGAAACCTGTTAGACTAAAAGAGGTACAGATCATTTGGCAGCATGTAATCAGGAAGAAGAAAACTAGCAAACGAAGCAATCATGACGCGCCTAATTCTGATAGTGGAAATGGGAAAGATTCGGCTGGGACAGGAAATTCTGATAAGAATGAAAAACCATCTAGAAAAAGGAAGGATAAGAATGAAGATGACAGTGAGGAAGAAAATGAGGATGATTATGACAATGATGATCAAACTGCGCAGAAGAAGCCTCGAACTGTTTGGTCCACTGATTTACATCGCAAGTTTGTTGTTGCGGTCAATCAATTAGGCATTGACGAGGCTGTACCAAAAAAGATTCTTGAACTGATGAATGTTGAAAATCTGACAAGGGAAAAGGTGGCCAGCCATCTTCAGAAGTATAGACTCTATCTACAAAGAATTAGCCGTGCGGAAGACAGACAAGACCATATGGAAGCAGCCTTAGCTAGTAGTTCAGATGCATCCTATCAACTCAGCAGCCAATCTTTCCCAGTGACATTCTTTTCCCACCCCCCATACTTCTCAGTCTCACATATCTTTCGTGATTTGTAA

Protein sequence

>MsaT000635.1

MNDQFPIGMRVLAVDDDRTCLKILEKLLQRCQYHVTTAQNAITALNLLRENKSNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMVMKGIEHGACDYLVKPVRLKEVQIIWQHVIRKKKTSKRSNHDAPNSDSGNGKDSAGTGNSDKNEKPSRKRKDKNEDDSEEENEDDYDNDDQTAQKKPRTVWSTDLHRKFVVAVNQLGIDEAVPKKILELMNVENLTREKVASHLQKYRLYLQRISRAEDRQDHMEAALASSSDASYQLSSQSFPVTFFSHPPYFSVSHIFRDL*