AlfalfaGEDB | MsaG000676

M. sativa ssp. caerulea / MsaG000676

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	XP_003628107.1	91.561	237	20	0	1	237	1	237	7.57e-158	447

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	sp\|Q9FKK2\|AGL62_ARATH	54.255	188	79	3	5	189	3	186	5.78e-61	196

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	tr\|G7L6X5\|G7L6X5_MEDTR	91.561	237	20	0	1	237	1	237	3.62e-158	447

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000676	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000676	MsaG003009	0.816455	9.516053e-52	1.908728e-49
MsaG000676	MsaG023010	0.806076	1.660961e-49	2.582211e-47
MsaG000676	MsaG027534	0.855847	9.288514e-62	6.186996e-59
MsaG000676	MsaG033515	0.829119	1.103299e-54	3.113378e-52
MsaG000676	MsaG031767	0.809101	3.812263e-50	6.370634e-48
MsaG000676	MsaG030747	0.804690	3.232025e-49	4.864638e-47
MsaG000676	MsaG030908	0.813358	4.591245e-51	8.516636e-49
MsaG002250	MsaG000676	0.818917	2.665827e-52	5.698186e-50
MsaG003749	MsaG000676	0.811795	1.005147e-50	1.793499e-48
MsaG003929	MsaG000676	0.801869	1.232331e-48	1.738162e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	MtrunA17_Chr8g0355091	91.561	237	20	0	1	237	1	237	6.96e-162	447
MsaG000676	MtrunA17_Chr1g0149391	93.249	237	16	0	1	237	1	237	2.10e-153	426
MsaG000676	MtrunA17_Chr1g0206701	89.451	237	25	0	1	237	1	237	4.47e-149	414
MsaG000676	MtrunA17_Chr1g0206721	89.035	228	25	0	1	228	1	228	4.32e-144	402
MsaG000676	MtrunA17_Chr2g0292791	87.342	237	30	0	1	237	1	237	1.13e-143	401
MsaG000676	MtrunA17_Chr1g0206691	85.455	220	32	0	18	237	1	220	3.53e-141	394
MsaG000676	MtrunA17_Chr3g0099421	84.932	219	33	0	1	219	26	244	1.43e-140	394
MsaG000676	MtrunA17_Chr3g0099411	79.452	219	26	1	1	219	1	200	2.03e-123	349
MsaG000676	MtrunA17_Chr5g0422941	67.511	237	77	0	1	237	1	237	1.37e-117	335
MsaG000676	MtrunA17_Chr3g0089141	72.340	235	47	3	1	225	1	227	1.32e-116	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	AT5G60440.1	54.255	188	79	3	5	189	3	186	5.87e-62	196
MsaG000676	AT2G24840.1	49.390	164	72	4	6	163	60	218	6.50e-45	151
MsaG000676	AT1G65360.1	39.207	227	123	6	5	225	3	220	1.15e-42	144
MsaG000676	AT1G01530.1	42.708	192	98	4	4	192	2	184	7.98e-42	143
MsaG000676	AT4G36590.1	46.296	162	81	2	5	160	3	164	1.21e-39	137
MsaG000676	AT2G34440.1	37.349	166	92	4	9	169	2	160	2.92e-28	105
MsaG000676	AT3G66656.1	41.985	131	71	2	9	134	2	132	1.60e-25	99.0
MsaG000676	AT3G04100.1	30.864	162	108	3	2	159	7	168	1.54e-22	92.0
MsaG000676	AT1G72350.1	33.553	152	68	3	9	160	43	161	3.45e-22	91.3
MsaG000676	AT2G45660.2	34.524	168	82	6	10	162	3	157	7.39e-20	83.6

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Find 49 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGAGGTTGCAACAT+AGG	0.496587	1:+8883537	None:intergenic
AATATTGAGCTCGCGCACGT+TGG	0.641144	1:+8883884	None:intergenic
AATGAAAATACCTTCTCCCC+AGG	0.587583	1:+8884005	None:intergenic
ACAAATGAGGTTGCAACATA+GGG	0.527904	1:+8883538	None:intergenic
ACAGAGAGTGCAAAGCTCAC+TGG	0.525840	1:+8884058	None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	1:-8884095	MsaT000676.1:CDS
AGAGCTGAGCCACTTGCGCA+AGG	0.589828	1:-8883811	MsaT000676.1:CDS
AGCCCACCAAAATTGAGTCT+CGG	0.589062	1:+8883785	None:intergenic
AGGCAACCGAGACTCAATTT+TGG	0.344827	1:-8883791	MsaT000676.1:CDS
AGGTTTGAGTAGGAGCTCCC+TGG	0.512402	1:+8883661	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	8883482	8884195	8883482	ID=MsaG000676
Chr1	mRNA	8883482	8884195	8883482	ID=MsaT000676.1;Parent=MsaG000676
Chr1	exon	8883482	8884195	8883482	ID=MsaT000676.1.exon1;Parent=MsaT000676.1
Chr1	CDS	8883482	8884195	8883482	ID=cds.MsaT000676.1;Parent=MsaT000676.1

Gene Sequence

>MsaT000676.1

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGCGAGCTCAATATTCAGTTGACTCAGATCAACCAGCTATTGGACAATGAGAAGAAACGCGCTGAAGAGCTGAGCCACTTGCGCAAGGCAACCGAGACTCAATTTTGGTGGGCTGGTTCCGTTGATGGGATGAATATGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGATTAAGAAACTTGTTGCACATCATGCTAATAGACTTGTAATCCAGGGAGCTCCTACTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTGACATGCCTCTCGATCATCAAGCAAATCCTCCGCAAACTCAAATATTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA

Protein sequence

>MsaT000676.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRAEELSHLRKATETQFWWAGSVDGMNMAQLEFFKKALEEIKKLVAHHANRLVIQGAPTQTFPFFVGNGSSSDMPLDHQANPPQTQIFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF*