AlfalfaGEDB | MsaG000676

M. sativa ssp. caerulea / MsaG000676

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	XP_003628107.1	91.561	237	20	0	1	237	1	237	7.57e-158	447

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	sp\|Q9FKK2\|AGL62_ARATH	54.255	188	79	3	5	189	3	186	5.78e-61	196

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	tr\|G7L6X5\|G7L6X5_MEDTR	91.561	237	20	0	1	237	1	237	3.62e-158	447

TFs/TRs:

Gene ID	Type	Classification
MsaG000676	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003749	MsaG000676	0.811795	1.005147e-50	1.793499e-48
MsaG003929	MsaG000676	0.801869	1.232331e-48	1.738162e-46
MsaG004293	MsaG000676	0.806694	1.232072e-49	1.943697e-47
MsaG004446	MsaG000676	0.811487	1.171813e-50	2.075159e-48
MsaG004507	MsaG000676	0.822563	3.906046e-53	9.196389e-51
MsaG004822	MsaG000676	0.835428	3.078323e-56	1.044432e-53
MsaG005214	MsaG000676	0.802131	1.089325e-48	1.545578e-46
MsaG005577	MsaG000676	0.814403	2.708432e-51	5.157621e-49
MsaG006255	MsaG000676	0.839607	2.643482e-57	1.019239e-54
MsaG006283	MsaG000676	0.823288	2.651273e-53	6.366000e-51
MsaG006861	MsaG000676	0.804895	2.929008e-49	4.429774e-47
MsaG007544	MsaG000676	0.841447	8.764956e-58	3.581254e-55
MsaG009301	MsaG000676	0.801320	1.595268e-48	2.222131e-46
MsaG011320	MsaG000676	0.803500	5.697843e-49	8.342985e-47
MsaG011366	MsaG000676	0.862468	9.825474e-64	8.398274e-61
MsaG011889	MsaG000676	0.834161	6.393622e-56	2.088443e-53
MsaG011971	MsaG000676	0.847983	1.548320e-59	7.836767e-57
MsaG042398	MsaG000676	0.812218	8.138019e-51	1.467231e-48
MsaG043190	MsaG000676	0.803666	5.265370e-49	7.739534e-47
MsaG045105	MsaG000676	0.842393	4.944965e-58	2.082447e-55
MsaG046530	MsaG000676	0.841498	8.498736e-58	3.478112e-55
MsaG046861	MsaG000676	0.861661	1.732672e-63	1.435023e-60
MsaG002250	MsaG000676	0.818917	2.665827e-52	5.698186e-50
MsaG000676	MsaG003009	0.816455	9.516053e-52	1.908728e-49
MsaG000676	MsaG023010	0.806076	1.660961e-49	2.582211e-47
MsaG000676	MsaG027534	0.855847	9.288514e-62	6.186996e-59
MsaG000676	MsaG033515	0.829119	1.103299e-54	3.113378e-52
MsaG000676	MsaG031767	0.809101	3.812263e-50	6.370634e-48
MsaG000676	MsaG030747	0.804690	3.232025e-49	4.864638e-47
MsaG000676	MsaG030908	0.813358	4.591245e-51	8.516636e-49
MsaG012643	MsaG000676	0.814982	2.019102e-51	3.901354e-49
MsaG016077	MsaG000676	0.814752	2.269330e-51	4.359466e-49
MsaG016293	MsaG000676	0.848705	9.799990e-60	5.081778e-57
MsaG016980	MsaG000676	0.827086	3.387607e-54	9.029378e-52
MsaG017128	MsaG000676	0.803021	7.151816e-49	1.035680e-46
MsaG017298	MsaG000676	0.844773	1.150815e-58	5.234217e-56
MsaG018044	MsaG000676	0.863220	5.772151e-64	5.081142e-61
MsaG018496	MsaG000676	0.856829	4.798798e-62	3.313669e-59
MsaG019793	MsaG000676	0.809341	3.388041e-50	5.694134e-48
MsaG020527	MsaG000676	0.842190	5.593888e-58	2.340261e-55
MsaG021904	MsaG000676	0.802619	8.652056e-49	1.241426e-46
MsaG022021	MsaG000676	0.834957	4.043022e-56	1.352463e-53
MsaG022065	MsaG000676	0.848560	1.074077e-59	5.542554e-57
MsaG022486	MsaG000676	0.840723	1.355565e-57	5.413116e-55
MsaG027732	MsaG000676	0.826424	4.865690e-54	1.273253e-51
MsaG027766	MsaG000676	0.808316	5.597666e-50	9.178861e-48
MsaG028031	MsaG000676	0.808549	4.996177e-50	8.238634e-48
MsaG029217	MsaG000676	0.840387	1.658202e-57	6.552608e-55
MsaG029473	MsaG000676	0.810303	2.108666e-50	3.627667e-48
MsaG029619	MsaG000676	0.825603	7.610578e-54	1.946445e-51
MsaG029653	MsaG000676	0.832147	2.016413e-55	6.209441e-53
MsaG033298	MsaG000676	0.818863	2.741361e-52	5.851349e-50
MsaG035059	MsaG000676	0.826588	4.449888e-54	1.169710e-51
MsaG041285	MsaG000676	0.822059	5.105267e-53	1.185819e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	MtrunA17_Chr8g0355091	91.561	237	20	0	1	237	1	237	6.96e-162	447
MsaG000676	MtrunA17_Chr1g0149391	93.249	237	16	0	1	237	1	237	2.10e-153	426
MsaG000676	MtrunA17_Chr1g0206701	89.451	237	25	0	1	237	1	237	4.47e-149	414
MsaG000676	MtrunA17_Chr1g0206721	89.035	228	25	0	1	228	1	228	4.32e-144	402
MsaG000676	MtrunA17_Chr2g0292791	87.342	237	30	0	1	237	1	237	1.13e-143	401
MsaG000676	MtrunA17_Chr1g0206691	85.455	220	32	0	18	237	1	220	3.53e-141	394
MsaG000676	MtrunA17_Chr3g0099421	84.932	219	33	0	1	219	26	244	1.43e-140	394
MsaG000676	MtrunA17_Chr3g0099411	79.452	219	26	1	1	219	1	200	2.03e-123	349
MsaG000676	MtrunA17_Chr5g0422941	67.511	237	77	0	1	237	1	237	1.37e-117	335
MsaG000676	MtrunA17_Chr3g0089141	72.340	235	47	3	1	225	1	227	1.32e-116	332
MsaG000676	MtrunA17_Chr2g0300441	69.620	237	71	1	1	237	1	236	8.23e-116	330
MsaG000676	MtrunA17_Chr1g0208561	72.340	235	47	3	1	225	1	227	8.56e-116	330
MsaG000676	MtrunA17_Chr2g0317451	66.525	236	79	0	1	236	1	236	9.83e-116	330
MsaG000676	MtrunA17_Chr1g0188671	69.778	225	68	0	1	225	39	263	9.93e-116	332
MsaG000676	MtrunA17_Chr1g0206991	86.813	182	24	0	1	182	1	182	1.12e-115	328
MsaG000676	MtrunA17_Chr2g0317481	66.525	236	79	0	1	236	1	236	2.44e-115	329
MsaG000676	MtrunA17_Chr5g0419601	70.886	237	69	0	1	237	1	237	7.84e-114	325
MsaG000676	MtrunA17_Chr1g0187361	69.778	225	68	0	1	225	1	225	4.94e-113	323
MsaG000676	MtrunA17_Chr2g0325971	70.638	235	51	3	1	225	1	227	2.56e-111	319
MsaG000676	MtrunA17_Chr1g0208581	69.362	235	54	3	1	225	1	227	4.58e-109	313
MsaG000676	MtrunA17_Chr5g0422421	68.000	225	72	0	1	225	1	225	7.45e-109	313
MsaG000676	MtrunA17_Chr7g0238991	61.864	236	88	2	3	237	14	248	2.91e-97	284
MsaG000676	MtrunA17_Chr2g0300421	78.906	128	27	0	1	128	1	128	5.70e-67	204
MsaG000676	MtrunA17_Chr3g0085241	51.323	189	82	1	3	191	35	213	1.24e-65	203
MsaG000676	MtrunA17_Chr3g0089151	75.194	129	32	0	1	129	1	129	1.13e-64	197
MsaG000676	MtrunA17_Chr3g0119901	50.262	191	91	1	7	193	7	197	3.63e-64	198
MsaG000676	MtrunA17_Chr3g0111931	67.647	102	33	0	21	122	2	103	2.14e-44	144
MsaG000676	MtrunA17_Chr2g0333981	40.351	171	92	2	5	172	8	171	5.29e-41	138
MsaG000676	MtrunA17_Chr8g0379021	40.462	173	89	3	5	170	8	173	4.00e-39	133
MsaG000676	MtrunA17_Chr4g0018951	45.161	155	73	3	5	159	8	150	2.28e-36	126
MsaG000676	MtrunA17_Chr1g0187351	81.818	66	12	0	18	83	1	66	2.38e-33	115
MsaG000676	MtrunA17_Chr3g0111841	86.441	59	8	0	15	73	2	60	9.80e-31	108
MsaG000676	MtrunA17_Chr4g0071601	38.122	181	92	4	5	172	8	181	2.38e-30	111
MsaG000676	MtrunA17_Chr3g0111831	72.131	61	17	0	16	76	11	71	3.52e-25	94.7
MsaG000676	MtrunA17_Chr1g0175601	45.946	111	57	2	9	118	2	110	2.02e-24	95.9
MsaG000676	MtrunA17_Chr1g0169761	40.559	143	67	4	9	135	2	142	3.79e-24	95.1
MsaG000676	MtrunA17_Chr4g0074101	33.529	170	86	5	9	162	2	160	5.87e-24	95.1
MsaG000676	MtrunA17_Chr8g0357771	37.195	164	85	3	9	169	2	150	1.30e-23	93.6
MsaG000676	MtrunA17_Chr8g0376821	44.643	112	57	3	9	118	2	110	2.09e-23	93.2
MsaG000676	MtrunA17_Chr1g0180591	45.536	112	56	3	9	118	2	110	2.57e-23	92.8
MsaG000676	MtrunA17_Chr1g0175611	43.363	113	62	1	9	121	2	112	5.31e-23	91.7
MsaG000676	MtrunA17_Chr8g0356071	36.620	142	82	2	9	147	2	138	9.38e-22	88.2
MsaG000676	MtrunA17_Chr4g0052061	41.509	106	60	1	9	114	2	105	2.41e-20	84.3
MsaG000676	MtrunA17_Chr3g0077501	52.941	68	32	0	9	76	2	69	4.20e-19	82.8
MsaG000676	MtrunA17_Chr8g0345001	33.544	158	92	3	8	159	17	167	5.08e-19	81.6
MsaG000676	MtrunA17_Chr4g0049901	57.576	66	28	0	10	75	29	94	1.02e-18	82.0
MsaG000676	MtrunA17_Chr3g0097101	51.351	74	36	0	3	76	11	84	2.48e-18	81.3
MsaG000676	MtrunA17_Chr4g0052081	41.509	106	61	1	9	113	2	107	2.87e-18	79.3
MsaG000676	MtrunA17_Chr4g0057151	50.685	73	36	0	10	82	3	75	3.31e-18	80.1
MsaG000676	MtrunA17_Chr2g0284911	32.558	172	100	4	9	170	17	182	6.10e-18	80.5
MsaG000676	MtrunA17_Chr5g0427401	51.471	68	33	0	9	76	2	69	1.34e-17	78.6
MsaG000676	MtrunA17_Chr3g0093131	34.266	143	77	4	26	159	36	170	2.04e-17	77.4
MsaG000676	MtrunA17_Chr6g0474371	49.275	69	34	1	9	76	2	70	2.24e-17	77.4
MsaG000676	MtrunA17_Chr8g0351041	47.436	78	41	0	10	87	3	80	2.30e-17	76.6
MsaG000676	MtrunA17_Chr8g0351051	51.471	68	33	0	9	76	2	69	2.71e-17	78.6
MsaG000676	MtrunA17_Chr8g0351031	27.111	225	132	5	10	220	3	209	3.24e-17	77.8
MsaG000676	MtrunA17_Chr5g0412271	30.405	148	86	2	9	156	2	132	3.76e-17	77.4
MsaG000676	MtrunA17_Chr8g0380021	51.471	68	33	0	9	76	18	85	4.77e-17	77.4
MsaG000676	MtrunA17_Chr3g0134451	42.308	104	57	3	9	111	2	103	5.50e-17	78.6
MsaG000676	MtrunA17_Chr2g0279821	48.529	68	35	0	9	76	2	69	1.09e-16	76.6
MsaG000676	MtrunA17_Chr4g0061691	47.826	69	35	1	9	76	2	70	1.13e-16	76.3
MsaG000676	MtrunA17_Chr5g0412461	48.529	68	35	0	9	76	2	69	1.66e-16	75.9
MsaG000676	MtrunA17_Chr1g0204111	50.000	68	34	0	9	76	18	85	1.81e-16	76.3
MsaG000676	MtrunA17_Chr7g0246431	38.182	110	66	1	10	119	3	110	2.33e-16	75.1
MsaG000676	MtrunA17_Chr4g0020221	51.471	68	33	0	9	76	2	69	6.04e-16	74.7
MsaG000676	MtrunA17_Chr4g0049541	47.059	68	36	0	9	76	2	69	7.76e-16	73.9
MsaG000676	MtrunA17_Chr8g0366231	36.792	106	63	2	9	114	2	103	9.69e-16	73.9
MsaG000676	MtrunA17_Chr6g0455511	49.275	69	34	1	9	76	2	70	1.04e-15	73.9
MsaG000676	MtrunA17_Chr7g0220111	49.275	69	34	1	9	76	2	70	1.18e-15	73.9
MsaG000676	MtrunA17_Chr5g0404951	50.000	70	33	1	9	76	2	71	1.72e-15	73.2
MsaG000676	MtrunA17_Chr1g0173161	52.459	61	29	0	9	69	2	62	2.03e-15	69.3
MsaG000676	MtrunA17_Chr5g0411691	48.529	68	35	0	9	76	2	69	2.34e-15	72.8
MsaG000676	MtrunA17_Chr5g0420081	45.070	71	36	1	9	79	2	69	2.82e-15	72.4
MsaG000676	MtrunA17_Chr5g0425191	56.604	53	23	0	9	61	2	54	2.95e-15	69.3
MsaG000676	MtrunA17_Chr2g0308251	47.826	69	36	0	9	77	2	70	3.41e-15	68.6
MsaG000676	MtrunA17_Chr5g0420091	47.826	69	35	1	9	76	2	70	8.04e-15	70.9
MsaG000676	MtrunA17_Chr4g0044071	52.632	57	27	0	9	65	2	58	9.37e-15	68.2
MsaG000676	MtrunA17_Chr8g0377561	53.571	56	26	0	9	64	2	57	1.48e-14	67.4
MsaG000676	MtrunA17_Chr1g0164791	47.143	70	35	1	9	76	2	71	1.85e-14	70.1
MsaG000676	MtrunA17_Chr7g0220121	43.478	69	38	1	9	76	2	70	1.86e-14	70.5
MsaG000676	MtrunA17_Chr3g0125241	44.286	70	37	1	9	76	27	96	2.54e-14	69.3
MsaG000676	MtrunA17_Chr1g0159661	46.970	66	34	1	9	74	2	66	2.78e-14	68.9
MsaG000676	MtrunA17_Chr4g0061671	50.877	57	28	0	9	65	2	58	3.07e-14	68.9
MsaG000676	MtrunA17_Chr7g0246381	52.632	57	27	0	9	65	2	58	3.93e-14	65.5
MsaG000676	MtrunA17_Chr5g0427921	49.123	57	29	0	9	65	2	58	4.20e-14	65.1
MsaG000676	MtrunA17_Chr3g0122251	47.826	69	35	1	9	76	2	70	5.66e-14	69.3
MsaG000676	MtrunA17_Chr3g0142191	26.339	224	130	7	9	226	2	196	7.01e-14	68.6
MsaG000676	MtrunA17_Chr4g0060841	28.977	176	103	7	9	172	2	167	2.14e-13	68.6
MsaG000676	MtrunA17_Chr4g0025531	31.765	170	96	3	1	170	1	150	1.09e-12	65.5
MsaG000676	MtrunA17_Chr2g0302091	30.303	165	83	7	7	159	36	180	2.27e-12	63.9
MsaG000676	MtrunA17_Chr5g0417661	42.029	69	34	1	9	77	57	119	4.50e-12	61.6
MsaG000676	MtrunA17_Chr4g0018421	30.872	149	86	6	9	156	2	134	1.01e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000676	AT5G60440.1	54.255	188	79	3	5	189	3	186	5.87e-62	196
MsaG000676	AT2G24840.1	49.390	164	72	4	6	163	60	218	6.50e-45	151
MsaG000676	AT1G65360.1	39.207	227	123	6	5	225	3	220	1.15e-42	144
MsaG000676	AT1G01530.1	42.708	192	98	4	4	192	2	184	7.98e-42	143
MsaG000676	AT4G36590.1	46.296	162	81	2	5	160	3	164	1.21e-39	137
MsaG000676	AT2G34440.1	37.349	166	92	4	9	169	2	160	2.92e-28	105
MsaG000676	AT3G66656.1	41.985	131	71	2	9	134	2	132	1.60e-25	99.0
MsaG000676	AT3G04100.1	30.864	162	108	3	2	159	7	168	1.54e-22	92.0
MsaG000676	AT1G72350.1	33.553	152	68	3	9	160	43	161	3.45e-22	91.3
MsaG000676	AT2G45660.2	34.524	168	82	6	10	162	3	157	7.39e-20	83.6
MsaG000676	AT1G28460.1	31.902	163	99	4	5	161	4	160	2.13e-19	82.8
MsaG000676	AT4G22950.2	49.351	77	39	0	10	86	3	79	2.81e-19	82.4
MsaG000676	AT2G45660.1	34.337	166	81	6	10	160	3	155	3.30e-19	83.2
MsaG000676	AT4G09960.2	46.512	86	45	1	9	93	2	87	3.39e-19	83.2
MsaG000676	AT4G09960.1	46.512	86	45	1	9	93	2	87	3.89e-19	83.2
MsaG000676	AT4G09960.6	46.512	86	45	1	9	93	3	88	4.31e-19	83.2
MsaG000676	AT4G09960.5	46.512	86	45	1	9	93	12	97	5.54e-19	83.2
MsaG000676	AT4G18960.1	31.092	238	138	9	5	226	15	242	7.05e-19	83.2
MsaG000676	AT4G09960.3	46.512	86	45	1	9	93	28	113	7.99e-19	83.2
MsaG000676	AT2G45650.1	52.941	68	32	0	9	76	2	69	1.33e-18	82.4
MsaG000676	AT4G22950.3	50.000	76	38	0	10	85	3	78	1.46e-18	81.6
MsaG000676	AT4G22950.1	50.000	76	38	0	10	85	3	78	1.46e-18	81.6
MsaG000676	AT4G24540.1	35.811	148	78	4	9	156	2	132	1.78e-18	81.3
MsaG000676	AT4G09960.4	46.512	86	45	1	9	93	97	182	2.53e-18	82.8
MsaG000676	AT2G22540.3	38.346	133	72	4	9	132	2	133	1.75e-17	79.0
MsaG000676	AT2G22540.1	38.346	133	72	4	9	132	2	133	1.75e-17	79.0
MsaG000676	AT5G51870.2	53.731	67	31	0	10	76	3	69	2.19e-17	77.4
MsaG000676	AT5G51870.1	53.731	67	31	0	10	76	3	69	3.20e-17	77.8
MsaG000676	AT3G57230.2	47.059	68	36	0	9	76	2	69	4.64e-17	75.9
MsaG000676	AT5G51870.5	50.000	72	36	0	5	76	21	92	5.12e-17	77.0
MsaG000676	AT2G42830.1	50.704	71	35	0	6	76	14	84	5.65e-17	77.8
MsaG000676	AT2G42830.2	50.704	71	35	0	6	76	14	84	6.25e-17	77.8
MsaG000676	AT3G58780.1	50.704	71	35	0	6	76	14	84	6.45e-17	77.8
MsaG000676	AT3G58780.5	50.704	71	35	0	6	76	20	90	7.11e-17	77.8
MsaG000676	AT5G51870.4	53.731	67	31	0	10	76	3	69	7.50e-17	77.0
MsaG000676	AT1G22130.1	37.143	105	65	1	9	112	2	106	7.52e-17	78.6
MsaG000676	AT5G51870.3	53.731	67	31	0	10	76	13	79	8.45e-17	77.0
MsaG000676	AT1G77980.1	38.095	105	64	1	9	112	2	106	8.68e-17	78.6
MsaG000676	AT3G61120.1	51.471	68	33	0	9	76	2	69	8.75e-17	77.4
MsaG000676	AT5G10140.2	50.725	69	33	1	9	76	2	70	9.91e-17	75.5
MsaG000676	AT5G62165.14	49.254	67	34	0	10	76	3	69	1.02e-16	73.6
MsaG000676	AT3G58780.4	50.704	71	35	0	6	76	14	84	1.13e-16	77.4
MsaG000676	AT1G29962.1	29.714	175	110	5	5	169	4	175	1.20e-16	75.5
MsaG000676	AT4G37940.4	48.529	68	35	0	9	76	2	69	1.23e-16	76.3
MsaG000676	AT3G57390.3	50.000	68	34	0	9	76	2	69	1.29e-16	76.6
MsaG000676	AT5G10140.4	50.725	69	33	1	9	76	2	70	1.36e-16	75.5
MsaG000676	AT5G62165.6	49.254	67	34	0	10	76	3	69	1.44e-16	74.7
MsaG000676	AT5G62165.9	49.254	67	34	0	10	76	3	69	1.44e-16	74.7
MsaG000676	AT5G62165.7	49.254	67	34	0	10	76	3	69	1.44e-16	74.7
MsaG000676	AT5G62165.8	49.254	67	34	0	10	76	3	69	1.44e-16	74.7
MsaG000676	AT5G62165.13	49.254	67	34	0	10	76	3	69	1.44e-16	74.7
MsaG000676	AT4G37940.1	48.529	68	35	0	9	76	2	69	1.47e-16	76.3
MsaG000676	AT1G77950.3	47.368	76	38	2	9	83	2	76	1.49e-16	76.6
MsaG000676	AT1G77950.2	47.368	76	38	2	9	83	2	76	1.49e-16	76.6
MsaG000676	AT1G77950.1	47.368	76	38	2	9	83	2	76	1.49e-16	76.6
MsaG000676	AT1G77950.4	47.368	76	38	2	9	83	2	76	1.49e-16	76.6
MsaG000676	AT5G62165.17	49.254	67	34	0	10	76	3	69	1.66e-16	74.7
MsaG000676	AT5G62165.12	49.254	67	34	0	10	76	3	69	1.66e-16	74.7
MsaG000676	AT5G62165.11	49.254	67	34	0	10	76	3	69	1.66e-16	74.7
MsaG000676	AT5G10140.1	50.725	69	33	1	9	76	2	70	1.67e-16	75.5
MsaG000676	AT5G10140.3	50.725	69	33	1	9	76	2	70	1.72e-16	75.1
MsaG000676	AT4G37940.3	48.529	68	35	0	9	76	2	69	1.74e-16	75.1
MsaG000676	AT3G57230.1	47.059	68	36	0	9	76	2	69	1.74e-16	76.3
MsaG000676	AT3G57230.4	47.059	68	36	0	9	76	2	69	1.74e-16	76.3
MsaG000676	AT3G54340.1	29.487	156	86	3	9	162	2	135	1.96e-16	76.3
MsaG000676	AT5G13790.2	43.011	93	44	1	9	101	2	85	2.22e-16	76.6
MsaG000676	AT5G13790.1	51.471	68	33	0	9	76	2	69	2.72e-16	76.3
MsaG000676	AT3G57390.1	50.000	68	34	0	9	76	2	69	3.27e-16	75.9
MsaG000676	AT4G11880.2	48.611	72	36	1	10	80	3	74	3.34e-16	74.3
MsaG000676	AT4G11880.3	48.611	72	36	1	10	80	3	74	3.34e-16	74.3
MsaG000676	AT1G69120.2	40.659	91	51	1	9	99	2	89	4.71e-16	75.1
MsaG000676	AT5G51860.2	52.239	67	32	0	10	76	3	69	5.11e-16	74.3
MsaG000676	AT2G22630.1	47.059	68	36	0	9	76	2	69	5.84e-16	74.7
MsaG000676	AT2G22630.2	47.059	68	36	0	9	76	2	69	5.84e-16	74.7
MsaG000676	AT5G62165.10	49.254	67	34	0	10	76	3	69	6.03e-16	73.9
MsaG000676	AT5G62165.4	49.254	67	34	0	10	76	3	69	6.03e-16	73.9
MsaG000676	AT5G51860.1	52.239	67	32	0	10	76	3	69	6.39e-16	74.3
MsaG000676	AT5G60910.1	49.296	71	33	1	9	79	2	69	7.14e-16	74.7
MsaG000676	AT5G62165.3	49.254	67	34	0	10	76	3	69	7.24e-16	73.9
MsaG000676	AT5G62165.1	49.254	67	34	0	10	76	3	69	7.24e-16	73.9
MsaG000676	AT5G62165.2	49.254	67	34	0	10	76	3	69	7.24e-16	73.9
MsaG000676	AT4G11880.4	48.611	72	36	1	10	80	3	74	8.13e-16	74.3
MsaG000676	AT4G11880.1	48.611	72	36	1	10	80	3	74	8.13e-16	74.3
MsaG000676	AT3G30260.1	29.091	165	99	4	9	172	2	149	8.64e-16	74.7
MsaG000676	AT1G69120.1	40.659	91	51	1	9	99	2	89	1.01e-15	74.7
MsaG000676	AT1G26310.1	47.826	69	35	1	9	76	2	70	1.16e-15	74.3
MsaG000676	AT5G23260.4	44.330	97	46	3	2	90	9	105	1.90e-15	73.9
MsaG000676	AT5G23260.1	44.330	97	46	3	2	90	9	105	1.96e-15	73.9
MsaG000676	AT5G15800.1	49.275	69	34	1	9	76	2	70	2.97e-15	73.2
MsaG000676	AT5G20240.2	47.143	70	35	1	9	76	2	71	3.49e-15	70.9
MsaG000676	AT5G23260.3	45.455	88	42	2	9	90	2	89	3.79e-15	72.8
MsaG000676	AT5G23260.2	45.455	88	42	2	9	90	2	89	4.07e-15	72.8
MsaG000676	AT5G15800.2	49.275	69	34	1	9	76	2	70	5.11e-15	72.8
MsaG000676	AT2G22540.2	37.594	133	68	5	9	132	2	128	5.82e-15	72.0
MsaG000676	AT1G17310.1	51.899	79	36	1	8	86	47	123	5.87e-15	71.6
MsaG000676	AT5G20240.1	47.143	70	35	1	9	76	2	71	6.59e-15	71.6
MsaG000676	AT1G17310.2	51.899	79	36	1	8	86	58	134	7.11e-15	71.6
MsaG000676	AT2G14210.1	46.377	69	36	1	9	76	2	70	8.34e-15	71.6
MsaG000676	AT2G14210.2	46.377	69	36	1	9	76	2	70	1.08e-14	71.2
MsaG000676	AT3G58780.2	53.333	60	28	0	6	65	14	73	1.97e-14	70.9
MsaG000676	AT3G02310.2	47.826	69	35	1	9	76	2	70	2.16e-14	69.7
MsaG000676	AT5G65050.2	46.377	69	36	1	9	76	2	70	2.17e-14	69.3
MsaG000676	AT3G58780.3	53.333	60	28	0	6	65	14	73	2.43e-14	70.9
MsaG000676	AT1G28450.1	29.518	166	102	6	5	161	4	163	2.55e-14	69.3
MsaG000676	AT5G65050.5	46.377	69	36	1	9	76	2	70	3.76e-14	68.9
MsaG000676	AT5G65050.3	46.377	69	36	1	9	76	2	70	3.97e-14	68.9
MsaG000676	AT2G03710.3	47.143	70	35	2	9	76	2	71	3.98e-14	68.9
MsaG000676	AT5G65050.1	46.377	69	36	1	9	76	2	70	4.19e-14	68.6
MsaG000676	AT3G02310.1	47.826	69	35	1	9	76	2	70	4.94e-14	69.7
MsaG000676	AT5G65060.3	46.377	69	36	1	9	76	2	70	6.24e-14	68.6
MsaG000676	AT5G65060.2	46.377	69	36	1	9	76	2	70	7.08e-14	68.2
MsaG000676	AT2G03710.1	47.143	70	35	2	9	76	2	71	8.75e-14	69.3
MsaG000676	AT5G65060.1	46.377	69	36	1	9	76	2	70	8.95e-14	68.2
MsaG000676	AT2G03710.2	47.143	70	35	2	9	76	2	71	9.00e-14	69.3
MsaG000676	AT1G24260.3	53.571	56	26	0	9	64	2	57	1.13e-13	68.6
MsaG000676	AT1G24260.1	53.571	56	26	0	9	64	2	57	1.16e-13	68.6
MsaG000676	AT1G71692.1	44.286	70	38	1	9	77	2	71	1.19e-13	68.2
MsaG000676	AT1G24260.2	53.571	56	26	0	9	64	2	57	1.24e-13	68.6
MsaG000676	AT1G47760.1	33.333	111	60	2	9	119	2	98	2.66e-13	66.6
MsaG000676	AT5G65070.4	42.029	69	39	1	9	76	2	70	2.94e-13	65.5
MsaG000676	AT5G65070.1	42.029	69	39	1	9	76	2	70	6.33e-13	65.9
MsaG000676	AT5G65070.5	42.029	69	39	1	9	76	2	70	1.02e-12	65.5
MsaG000676	AT5G65070.2	42.029	69	39	1	9	76	2	70	1.17e-12	65.5
MsaG000676	AT5G65070.3	47.368	57	30	0	9	65	2	58	5.25e-12	63.9
MsaG000676	AT4G37435.1	40.278	72	42	1	9	79	2	73	1.92e-11	61.6
MsaG000676	AT1G69540.1	37.778	90	52	3	9	95	2	90	2.21e-11	63.2
MsaG000676	AT1G69540.2	37.778	90	52	3	9	95	2	90	2.81e-11	62.8
MsaG000676	AT2G26320.1	40.000	70	40	1	9	76	18	87	3.52e-11	58.9
MsaG000676	AT1G18750.4	37.333	75	45	1	9	81	2	76	3.78e-11	62.4
MsaG000676	AT1G18750.3	37.333	75	45	1	9	81	2	76	4.06e-11	62.4
MsaG000676	AT1G18750.1	37.333	75	45	1	9	81	2	76	4.60e-11	62.4
MsaG000676	AT5G65080.3	42.029	69	39	1	9	76	9	77	4.76e-11	60.5
MsaG000676	AT5G65080.2	43.548	62	35	0	1	62	1	62	6.94e-11	60.5
MsaG000676	AT2G03060.2	39.286	84	48	3	9	90	2	84	7.04e-11	61.6
MsaG000676	AT2G03060.3	39.286	84	48	3	9	90	2	84	7.65e-11	61.6
MsaG000676	AT2G03060.7	39.286	84	48	3	9	90	2	84	7.65e-11	61.6
MsaG000676	AT2G03060.1	39.286	84	48	3	9	90	2	84	7.65e-11	61.6

Find 49 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGTTTGGTTTCAACAATA+TGG	0.234944	1:-8883520	MsaT000676.1:CDS
TGGTGGGCTGGTTCCGTTGA+TGG	0.307687	1:-8883771	MsaT000676.1:CDS
ATTGCATGGTACCATTGTTT+TGG	0.337688	1:+8883928	None:intergenic
AGGCAACCGAGACTCAATTT+TGG	0.344827	1:-8883791	MsaT000676.1:CDS
TTGTTTGGTTTCAACAATAT+GGG	0.345119	1:-8883519	MsaT000676.1:CDS
ATGTTGCAACCTCATTTGTT+TGG	0.384083	1:-8883534	MsaT000676.1:CDS
GACTCAGATCAACCAGCTAT+TGG	0.396679	1:-8883856	MsaT000676.1:CDS
GGTGGGCTGGTTCCGTTGAT+GGG	0.444286	1:-8883770	MsaT000676.1:CDS
TCTTCTCATTGTCCAATAGC+TGG	0.447890	1:+8883844	None:intergenic
TGCTAATAGACTTGTAATCC+AGG	0.468448	1:-8883679	MsaT000676.1:CDS
TTCCGTTGATGGGATGAATA+TGG	0.470577	1:-8883760	MsaT000676.1:CDS
TCTCGGTTGCCTTGCGCAAG+TGG	0.488530	1:+8883802	None:intergenic
AACAAATGAGGTTGCAACAT+AGG	0.496587	1:+8883537	None:intergenic
GGGCTCAGATCAAAAGAATC+CGG	0.502950	1:+8883473	None:intergenic
ATCTATGACCGTATCAACAT+TGG	0.506900	1:+8883974	None:intergenic
GCTGGAAATATTTGAGTTTG+CGG	0.509101	1:+8883576	None:intergenic
AGGTTTGAGTAGGAGCTCCC+TGG	0.512402	1:+8883661	None:intergenic
ACAGAGAGTGCAAAGCTCAC+TGG	0.525840	1:+8884058	None:intergenic
ACAAATGAGGTTGCAACATA+GGG	0.527904	1:+8883538	None:intergenic
TCTATGACCGTATCAACATT+GGG	0.542196	1:+8883975	None:intergenic
TGGCCAACCCAATGTTGATA+CGG	0.545005	1:-8883982	MsaT000676.1:CDS
CTTTCTCGAAGCGCCGTAGT+GGG	0.553366	1:-8884094	MsaT000676.1:CDS
TGTTTGGTTTCAACAATATG+GGG	0.556331	1:-8883518	MsaT000676.1:CDS
TTGTTGAAACCAAACAAATG+AGG	0.558095	1:+8883525	None:intergenic
GGAGGTGGATATGGACCCTC+CGG	0.560213	1:-8883492	MsaT000676.1:CDS
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	1:-8884095	MsaT000676.1:CDS
GCTCGCGCACGTTGGCACTA+CGG	0.576720	1:+8883892	None:intergenic
AATGAAAATACCTTCTCCCC+AGG	0.587583	1:+8884005	None:intergenic
GGCCATATTCATCCCATCAA+CGG	0.588307	1:+8883758	None:intergenic
AGCCCACCAAAATTGAGTCT+CGG	0.589062	1:+8883785	None:intergenic
AGAGCTGAGCCACTTGCGCA+AGG	0.589828	1:-8883811	MsaT000676.1:CDS
CTTCAACCATGTCAAGTGGA+AGG	0.599332	1:-8884181	None:intergenic
TGACCGTATCAACATTGGGT+TGG	0.600758	1:+8883979	None:intergenic
TGTGCTTCAACCATGTCAAG+TGG	0.601126	1:-8884185	None:intergenic
GTTTGGTTTCAACAATATGG+GGG	0.607401	1:-8883517	MsaT000676.1:CDS
CTTTCTTGAAGAGCCCACTA+CGG	0.610979	1:+8884081	None:intergenic
GCTAATAGACTTGTAATCCA+GGG	0.618189	1:-8883678	MsaT000676.1:CDS
GGATTTGCTTGATGATCGAG+AGG	0.624442	1:+8883600	None:intergenic
GGAAATATTTGAGTTTGCGG+AGG	0.627262	1:+8883579	None:intergenic
AGTGAGCTTTGCACTCTCTG+TGG	0.635156	1:-8884056	MsaT000676.1:CDS
TTTGGTTTCAACAATATGGG+GGG	0.638238	1:-8883516	MsaT000676.1:CDS
ATGATCGAGAGGCATGTCAG+AGG	0.638326	1:+8883611	None:intergenic
TGGTACCATGCAATTCATTG+AGG	0.638950	1:-8883919	MsaT000676.1:CDS
CGAGTCCCACCCCAAAACAA+TGG	0.639467	1:-8883939	MsaT000676.1:CDS
GTGAGCCTCAATGAATTGCA+TGG	0.640763	1:+8883914	None:intergenic
AATATTGAGCTCGCGCACGT+TGG	0.641144	1:+8883884	None:intergenic
CTCAGATCAAAAGAATCCGG+AGG	0.653378	1:+8883476	None:intergenic
TCAGATCAAAAGAATCCGGA+GGG	0.678771	1:+8883477	None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG	0.705721	1:-8884170	MsaT000676.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	8883482	8884195	8883482	ID=MsaG000676
Chr1	mRNA	8883482	8884195	8883482	ID=MsaT000676.1;Parent=MsaG000676
Chr1	exon	8883482	8884195	8883482	ID=MsaT000676.1.exon1;Parent=MsaT000676.1
Chr1	CDS	8883482	8884195	8883482	ID=cds.MsaT000676.1;Parent=MsaT000676.1

Gene Sequence

>MsaT000676.1

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGCGAGCTCAATATTCAGTTGACTCAGATCAACCAGCTATTGGACAATGAGAAGAAACGCGCTGAAGAGCTGAGCCACTTGCGCAAGGCAACCGAGACTCAATTTTGGTGGGCTGGTTCCGTTGATGGGATGAATATGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGATTAAGAAACTTGTTGCACATCATGCTAATAGACTTGTAATCCAGGGAGCTCCTACTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTGACATGCCTCTCGATCATCAAGCAAATCCTCCGCAAACTCAAATATTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA

Protein sequence

>MsaT000676.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRAEELSHLRKATETQFWWAGSVDGMNMAQLEFFKKALEEIKKLVAHHANRLVIQGAPTQTFPFFVGNGSSSDMPLDHQANPPQTQIFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF*