AlfalfaGEDB | MsaG000750

M. sativa ssp. caerulea / MsaG000750

KEGG: -
GO: GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000750	XP_013465771.2	89.286	700	66	4	1	695	23	718	0.0	1283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000750	sp\|Q9LMN7\|WAK5_ARATH	46.639	714	328	19	6	695	6	690	0.0	576

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000750	tr\|A0A396JF43\|A0A396JF43_MEDTR	89.286	700	66	4	1	695	23	718	0.0	1283

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000745	MsaG000750	0.968000	1.855380e-127	1.707257e-121
MsaG000750	MsaG001248	0.809998	2.451810e-50	4.186790e-48
MsaG000750	MsaG001531	0.802756	8.108684e-49	1.167095e-46
MsaG000750	MsaG005435	0.801235	1.659911e-48	2.307681e-46
MsaG000750	MsaG005438	0.805913	1.796067e-49	2.781553e-47
MsaG000750	MsaG006777	0.813815	3.647727e-51	6.844648e-49
MsaG000750	MsaG007387	0.812726	6.308068e-51	1.151816e-48
MsaG000750	MsaG012424	0.834165	6.377301e-56	2.083410e-53
MsaG000750	MsaG014927	0.806343	1.459738e-49	2.283867e-47
MsaG000750	MsaG016724	0.811679	1.064859e-50	1.894661e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG000750	MtrunA17_Chr1g0148461	89.286	700	66	4	1	695	23	718	1283
MsaG000750	MtrunA17_Chr1g0148501	80.256	704	127	4	4	695	8	711	1150
MsaG000750	MtrunA17_Chr1g0158201	64.697	677	216	10	25	695	34	693	871
MsaG000750	MtrunA17_Chr1g0158261	63.368	677	220	12	25	695	35	689	852
MsaG000750	MtrunA17_Chr1g0148511	62.136	721	223	20	2	695	8	705	832
MsaG000750	MtrunA17_Chr1g0158251	59.201	701	260	12	6	695	13	698	815
MsaG000750	MtrunA17_Chr1g0148491	65.571	639	181	16	76	695	1	619	791
MsaG000750	MtrunA17_Chr3g0125461	46.983	696	326	15	20	692	46	721	608
MsaG000750	MtrunA17_Chr3g0125451	45.265	718	344	14	6	695	5	701	596
MsaG000750	MtrunA17_Chr3g0125431	44.847	718	350	15	5	695	8	706	595

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000750	AT1G21230.1	46.639	714	328	19	6	695	6	690	0.0	576
MsaG000750	AT1G21270.1	45.339	708	342	18	4	695	8	686	0.0	568
MsaG000750	AT1G21240.1	44.958	714	343	17	5	695	11	697	0.0	558
MsaG000750	AT1G21250.1	44.492	708	348	16	5	695	12	691	0.0	548
MsaG000750	AT1G21210.1	44.842	698	332	19	23	695	23	692	0.0	547
MsaG000750	AT1G16130.1	39.038	707	382	18	3	688	12	690	4.89e-155	467
MsaG000750	AT1G16120.1	39.246	716	382	19	4	688	10	703	8.79e-150	453
MsaG000750	AT1G69730.1	38.114	753	360	24	4	689	10	723	1.72e-143	439
MsaG000750	AT1G16260.1	38.659	701	370	19	4	688	8	664	4.44e-142	432
MsaG000750	AT1G16260.2	38.659	701	370	19	4	688	8	664	4.44e-142	432

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Find 137 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGACGTCTATAGCTT+TGG	0.412009	1:+10379220	MsaT000750.1:CDS
AAACAAACAAGAGATCAAGA+AGG	0.606429	1:+10379390	MsaT000750.1:CDS
AAATCATACACCATGTTACA+TGG	0.474621	1:+10377147	MsaT000750.1:CDS
AACAACTCAAAATTAGTCCG+TGG	0.661722	1:+10377196	MsaT000750.1:CDS
AAGACCAAGCATGAAGGAAG+TGG	0.554397	1:+10379456	MsaT000750.1:CDS
AAGCATGAAGGAAGTGGCTA+TGG	0.511787	1:+10379462	MsaT000750.1:CDS
AAGTGTAATTGCAGCCAGGT+AGG	0.629035	1:-10377072	None:intergenic
AAGTTATTCAAGATGGTATG+TGG	0.467150	1:+10379359	MsaT000750.1:CDS
AAGTTCTTTAAGCAGAATGG+AGG	0.586504	1:+10378560	MsaT000750.1:CDS
AATAACAATGGAAAATGCAC+AGG	0.546578	1:+10377505	MsaT000750.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	10377001	10379531	10377001	ID=MsaG000750
Chr1	mRNA	10377001	10379531	10377001	ID=MsaT000750.1;Parent=MsaG000750
Chr1	exon	10377001	10377880	10377001	ID=MsaT000750.1.exon1;Parent=MsaT000750.1
Chr1	CDS	10377001	10377880	10377001	ID=cds.MsaT000750.1;Parent=MsaT000750.1
Chr1	exon	10378172	10378336	10378172	ID=MsaT000750.1.exon2;Parent=MsaT000750.1
Chr1	CDS	10378172	10378336	10378172	ID=cds.MsaT000750.1;Parent=MsaT000750.1
Chr1	exon	10378483	10379531	10378483	ID=MsaT000750.1.exon3;Parent=MsaT000750.1
Chr1	CDS	10378483	10379531	10378483	ID=cds.MsaT000750.1;Parent=MsaT000750.1

Gene Sequence

>MsaT000750.1

ATGCATCCATTCATAATTTTTTCATTAGCACTTTTGATAGAAACAGTTGCATATGATCAACCTCAACAAGTCCTACCTGGCTGCAATTACACTTGTGGAGATGTAACAATTCCATATCCATTTGGCATAGGAAATTCAACAGCACAAAATCATACACCATGTTACATGGATTCAAAATTTGAACTCACCTGTGTAAACAACTCAAAATTAGTCCGTGGTACGAATCTAGAAGTCCTAGACATAAATCCCCAAGGCCAAATGGAAATGAATTTTTTCGTCTCACATCTCTGTACGAATAGTAGTAGTAGTAGTAGTAATAATACCGAAGAAGCGAATATAGCTTATCTCAGAGTTTCTCCTCACACAATTTCAAGTACAAAAAACAAATTCATAACCGTTGGTTGTGACAGTTACGGATATCTCAACAGTAATTTCACAGGTGCCACTTATTCAACAGGGTGCTTAACAAGATGTTATGATTATGATCCTAAAATAGTAATTGGGAATAACAATGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTGGATATTCCTTCTAGTATGAAAAATATCACTATTGAAGCATTTAAATTCCCAACTTCTACACTATCTCAGGAAAATTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAAATTTTCTGTAGACCATATAGATAATCTACCTTATCAAACTTTCCCTGTAGTTCTTAATTGGGCTGTTGCAAATGAATCATGTCAAATAGCACAAACTACAGATAACTACGCCTGCAAAAAAAATAGTGAATGTGTCGATGATGATTCAGATTATGACGGTTACAGATGCAAGTGTTTAGAAGGTTTTGAAGGAAATCCGTACCTTCCTGGAGGCTGCACAGACATTGACGAATGTGCCACAAAAACTCATGTATGCAAAAATAAAGCAAATTGTATGAACACTTTGGGGAATCACACTTGTTTCTGTCCCAAGGGGCAAACCGGAGATGGAACAAAGGAAGGAGGATGCCAACCAGTTCATCTAAATGCCACTCAAATTGTCCTCGGAGCAGGAGCAGTACTATTTGTGGGGATAGTTTTCTTCATAATATACCAAAAAAGGAAATTTACCAAATTAAAAGAGAAGTTCTTTAAGCAGAATGGAGGTTCTATTTTGGAACAAAAACTTCTTCAAAGAAAAGACTCGTCTCAAATAGCTCACATTTTCAAAGAAAGTGAACTAAAGAAAGCCACTAACAACTTTGATGAGAGCTTAATCATAGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGGGAACTTGATGATAATAGAATTGTTGCTATCAAAAAGTCCAAAACTATAGACGAAAGCCAAATTGAACAATTCATTAATGAGGTGGATGTTGTCTCTCAAATAAATCATAGGAATGTGGTCAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTAGCAATGGTACTCTTTCTGAATTTATACACACACAAGGTGAGACGAACGATCTAACTTGGATAACTCGTCTTAGGATAGCTGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCAGCTGCCTCAATACCCATTATCCATAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCAGATTTTGGAGCTTCAAGATTGATTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCTAACAAGCCAATTGACTGAAAAAAGTGACGTCTATAGCTTTGGAGTAGTTCTTGTGGAGTTGCTAACGGGGGAGAAACCTTTTTGTTTTGGTAGGTCGGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTATCTTGCTTGAAAAATGATAATGTGTTTGAAGTTATTCAAGATGGTATGTGGAATGAAGAAAACAAACAAGAGATCAAGAAGGTAGCTGTTCTTGCGGCGAACTGCTTGAGACTTATAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGAGACCTTAA

Protein sequence

>MsaT000750.1

MHPFIIFSLALLIETVAYDQPQQVLPGCNYTCGDVTIPYPFGIGNSTAQNHTPCYMDSKFELTCVNNSKLVRGTNLEVLDINPQGQMEMNFFVSHLCTNSSSSSSNNTEEANIAYLRVSPHTISSTKNKFITVGCDSYGYLNSNFTGATYSTGCLTRCYDYDPKIVIGNNNGKCTGLGCCQVDIPSSMKNITIEAFKFPTSTLSQENCSYSFIAKQGSYKFSVDHIDNLPYQTFPVVLNWAVANESCQIAQTTDNYACKKNSECVDDDSDYDGYRCKCLEGFEGNPYLPGGCTDIDECATKTHVCKNKANCMNTLGNHTCFCPKGQTGDGTKEGGCQPVHLNATQIVLGAGAVLFVGIVFFIIYQKRKFTKLKEKFFKQNGGSILEQKLLQRKDSSQIAHIFKESELKKATNNFDESLIIGRGGFGTVFKGELDDNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSEFIHTQGETNDLTWITRLRIAAEVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFGASRLIPLDQTEVATMVQGTIGYLDPEYMLTSQLTEKSDVYSFGVVLVELLTGEKPFCFGRSEERRSLAMHFLSCLKNDNVFEVIQDGMWNEENKQEIKKVAVLAANCLRLIGEERPSMKEVAMELEGMRLMDKHSWRP*