AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG000811

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000811 MtrunA17_Chr1g0147881 98.020 101 2 0 21 121 240 340 2.19e-70 214
MsaG000811 MtrunA17_Chr4g0053281 70.588 102 24 1 20 121 243 338 2.40e-48 157
MsaG000811 MtrunA17_Chr4g0071521 85.000 80 12 0 21 100 223 302 3.43e-47 154
MsaG000811 MtrunA17_Chr5g0401821 66.337 101 28 1 21 121 177 271 8.65e-46 149
MsaG000811 MtrunA17_Chr1g0184691 79.012 81 17 0 21 101 271 351 1.95e-45 150
MsaG000811 MtrunA17_Chr3g0139021 70.787 89 25 1 21 109 292 379 6.11e-41 139
MsaG000811 MtrunA17_Chr7g0228941 65.823 79 27 0 22 100 31 109 1.22e-36 121
MsaG000811 MtrunA17_Chr2g0284321 55.422 83 36 1 21 102 12 94 2.56e-29 105
MsaG000811 MtrunA17_Chr2g0293481 54.118 85 34 1 21 100 240 324 6.33e-28 106
MsaG000811 MtrunA17_Chr7g0248691 60.000 80 27 2 21 100 137 211 3.19e-27 102
MsaG000811 MtrunA17_Chr8g0379461 51.724 87 35 1 21 100 47 133 1.14e-26 99.4
MsaG000811 MtrunA17_Chr2g0319961 50.515 97 42 2 21 111 52 148 2.52e-26 98.6
MsaG000811 MtrunA17_Chr7g0270051 57.333 75 30 1 28 100 36 110 7.46e-26 97.4
MsaG000811 MtrunA17_Chr8g0348311 56.250 80 30 1 21 100 138 212 1.16e-24 95.9
MsaG000811 MtrunA17_Chr2g0289181 55.263 76 31 1 40 115 11 83 6.24e-24 92.0
MsaG000811 MtrunA17_Chr5g0418191 56.098 82 32 2 27 105 301 381 9.90e-23 91.3
MsaG000811 MtrunA17_Chr5g0418191 50.725 69 31 3 35 102 142 208 4.05e-14 67.4
MsaG000811 MtrunA17_Chr5g0445311 40.000 115 55 3 4 105 312 425 1.99e-22 90.9
MsaG000811 MtrunA17_Chr5g0445311 50.877 57 26 2 44 100 201 255 2.74e-11 59.3
MsaG000811 MtrunA17_Chr5g0432161 54.762 84 34 2 25 105 400 482 2.82e-22 90.5
MsaG000811 MtrunA17_Chr5g0432161 54.386 57 24 2 44 100 245 299 5.49e-13 63.9
MsaG000811 MtrunA17_Chr1g0202461 48.780 82 41 1 20 100 237 318 3.26e-22 89.7
MsaG000811 MtrunA17_Chr3g0101131 39.344 122 62 4 4 115 366 485 3.52e-22 90.5
MsaG000811 MtrunA17_Chr4g0042831 53.659 82 34 2 27 105 259 339 3.95e-22 89.4
MsaG000811 MtrunA17_Chr4g0042831 50.877 57 27 1 44 100 146 201 1.64e-11 59.7
MsaG000811 MtrunA17_Chr4g0051881 45.238 84 45 1 30 113 165 247 1.27e-21 87.4
MsaG000811 MtrunA17_Chr3g0106491 53.659 82 37 1 23 104 345 425 1.59e-21 88.2
MsaG000811 MtrunA17_Chr3g0106491 50.000 68 32 2 44 111 199 264 8.54e-14 66.2
MsaG000811 MtrunA17_Chr7g0270191 48.649 74 37 1 27 100 129 201 2.54e-21 86.3
MsaG000811 MtrunA17_Chr7g0218081 51.807 83 36 2 26 105 390 471 3.52e-21 87.4
MsaG000811 MtrunA17_Chr7g0218081 53.731 67 28 3 35 100 219 283 8.94e-15 69.3
MsaG000811 MtrunA17_Chr3g0079691 51.220 82 39 1 24 105 476 556 1.45e-20 85.9
MsaG000811 MtrunA17_Chr3g0079691 54.386 57 24 2 44 100 281 335 2.19e-13 65.1
MsaG000811 MtrunA17_Chr7g0263531 51.471 68 32 1 35 102 353 419 1.66e-20 85.1
MsaG000811 MtrunA17_Chr7g0263531 46.512 86 43 3 35 119 180 263 1.89e-17 76.6
MsaG000811 MtrunA17_Chr8g0387501 59.649 57 23 0 44 100 130 186 1.69e-20 83.6
MsaG000811 MtrunA17_Chr4g0004911 51.899 79 34 2 27 102 317 394 1.86e-20 85.5
MsaG000811 MtrunA17_Chr4g0004911 39.815 108 53 3 4 100 134 240 9.84e-15 68.9
MsaG000811 MtrunA17_Chr7g0238921 42.056 107 47 4 3 100 80 180 2.84e-20 83.6
MsaG000811 MtrunA17_Chr7g0249301 48.193 83 39 2 26 105 272 353 3.97e-20 84.0
MsaG000811 MtrunA17_Chr7g0249301 53.448 58 25 2 44 101 63 118 3.65e-13 64.3
MsaG000811 MtrunA17_Chr2g0322391 46.341 82 44 0 27 108 333 414 5.16e-20 84.0
MsaG000811 MtrunA17_Chr5g0443131 45.679 81 43 1 30 110 144 223 5.82e-20 82.8
MsaG000811 MtrunA17_Chr2g0288871 41.414 99 56 1 6 102 266 364 6.78e-20 84.0
MsaG000811 MtrunA17_Chr7g0249311 47.368 95 47 2 24 116 373 466 7.21e-20 83.6
MsaG000811 MtrunA17_Chr7g0249311 49.275 69 30 3 33 101 172 235 3.09e-13 64.7
MsaG000811 MtrunA17_Chr4g0001361 50.649 77 37 1 36 112 155 230 9.65e-20 82.4
MsaG000811 MtrunA17_Chr7g0243891 50.000 84 38 2 25 105 353 435 2.63e-19 82.0
MsaG000811 MtrunA17_Chr7g0243891 54.386 57 24 2 44 100 217 271 4.83e-12 61.2
MsaG000811 MtrunA17_Chr1g0150281 52.632 57 27 0 44 100 141 197 2.91e-19 80.5
MsaG000811 MtrunA17_Chr2g0333851 50.000 66 33 0 35 100 161 226 3.45e-19 80.9
MsaG000811 MtrunA17_Chr3g0099641 41.176 85 50 0 27 111 235 319 3.79e-19 81.6
MsaG000811 MtrunA17_Chr2g0294231 43.023 86 48 1 26 111 186 270 4.00e-19 81.3
MsaG000811 MtrunA17_Chr1g0194481 44.578 83 43 2 20 100 133 214 5.53e-19 80.1
MsaG000811 MtrunA17_Chr4g0075201 45.570 79 43 0 27 105 251 329 8.04e-19 80.5
MsaG000811 MtrunA17_Chr4g0051181 38.235 102 44 1 18 100 199 300 8.43e-19 80.5
MsaG000811 MtrunA17_Chr7g0216891 41.584 101 58 1 3 103 180 279 1.61e-18 79.7
MsaG000811 MtrunA17_Chr4g0025061 52.239 67 32 0 44 110 361 427 1.91e-18 79.7
MsaG000811 MtrunA17_Chr7g0270831 45.570 79 43 0 27 105 200 278 2.59e-18 79.0
MsaG000811 MtrunA17_Chr3g0129361 44.186 86 44 2 29 111 127 211 2.67e-18 77.0
MsaG000811 MtrunA17_Chr3g0136961 47.222 72 38 0 29 100 124 195 3.44e-18 77.8
MsaG000811 MtrunA17_Chr5g0418781 47.297 74 38 1 27 100 108 180 5.06e-18 77.0
MsaG000811 MtrunA17_Chr8g0335811 45.783 83 41 2 22 101 130 211 7.36e-18 75.9
MsaG000811 MtrunA17_Chr1g0188941 44.578 83 45 1 24 106 32 113 8.08e-18 73.2
MsaG000811 MtrunA17_Chr8g0383351 42.529 87 45 2 29 111 142 227 8.75e-18 75.9
MsaG000811 MtrunA17_Chr4g0068541 39.773 88 52 1 27 114 192 278 1.07e-17 77.4
MsaG000811 MtrunA17_Chr1g0150801 49.296 71 35 1 30 100 89 158 1.43e-17 73.6
MsaG000811 MtrunA17_Chr7g0248721 43.678 87 44 3 24 107 119 203 1.78e-17 74.7
MsaG000811 MtrunA17_Chr4g0060271 52.542 59 28 0 44 102 256 314 2.16e-17 76.6
MsaG000811 MtrunA17_Chr4g0074001 56.140 57 24 1 44 100 360 415 2.93e-17 76.3
MsaG000811 MtrunA17_Chr3g0126391 50.000 74 28 2 44 115 134 200 5.47e-17 75.1
MsaG000811 MtrunA17_Chr3g0129321 45.000 80 43 1 21 100 96 174 7.41e-17 72.8
MsaG000811 MtrunA17_Chr2g0302391 48.529 68 35 0 44 111 212 279 7.54e-17 75.1
MsaG000811 MtrunA17_Chr8g0383251 52.381 63 29 1 40 102 105 166 1.44e-16 71.6
MsaG000811 MtrunA17_Chr1g0150271 46.774 62 33 0 41 102 99 160 1.51e-16 72.8
MsaG000811 MtrunA17_Chr5g0447701 54.386 57 25 1 44 100 253 308 3.37e-16 73.2
MsaG000811 MtrunA17_Chr5g0402931 60.345 58 20 2 43 100 123 177 3.97e-16 70.5
MsaG000811 MtrunA17_Chr7g0224801 47.692 65 33 1 39 103 89 152 5.03e-16 70.1
MsaG000811 MtrunA17_Chr7g0275531 51.562 64 29 1 44 105 119 182 6.47e-16 72.0
MsaG000811 MtrunA17_Chr1g0189391 58.065 62 24 2 40 100 94 154 1.20e-15 71.2
MsaG000811 MtrunA17_Chr4g0025051 49.254 67 34 0 44 110 336 402 1.24e-15 71.6
MsaG000811 MtrunA17_Chr6g0485431 49.254 67 32 2 44 109 155 220 1.51e-15 71.2
MsaG000811 MtrunA17_Chr8g0387981 49.123 57 27 1 44 98 133 189 2.32e-14 67.8
MsaG000811 MtrunA17_Chr8g0347251 40.476 84 47 2 21 101 113 196 3.12e-13 64.7
MsaG000811 MtrunA17_Chr8g0386241 38.235 68 41 1 40 107 100 166 3.66e-13 62.8
MsaG000811 MtrunA17_Chr2g0315381 32.727 110 63 4 22 121 123 231 5.71e-12 60.8
MsaG000811 MtrunA17_Chr4g0024391 40.964 83 47 1 26 108 214 294 1.07e-11 60.5
MsaG000811 MtrunA17_Chr2g0315361 37.333 75 45 1 26 98 131 205 1.67e-11 59.7
MsaG000811 MtrunA17_Chr5g0428351 41.558 77 40 2 24 98 167 240 2.57e-11 58.9
MsaG000811 MtrunA17_Chr5g0431811 44.068 59 31 1 42 98 671 729 3.98e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000811 AT4G31550.1 82.524 103 15 2 20 120 223 324 3.83e-56 177
MsaG000811 AT4G31550.2 83.333 102 14 2 21 120 223 323 7.06e-56 176
MsaG000811 AT2G24570.1 78.431 102 20 2 20 120 220 320 1.68e-52 168
MsaG000811 AT4G24240.1 79.268 82 17 0 21 102 259 340 8.36e-45 149
MsaG000811 AT2G30590.1 80.000 80 16 0 21 100 291 370 8.50e-45 149
MsaG000811 AT3G04670.1 80.247 81 16 0 21 101 240 320 1.22e-44 148
MsaG000811 AT5G28650.1 79.012 81 17 0 21 101 240 320 2.78e-44 147
MsaG000811 AT2G23320.1 74.390 82 21 0 21 102 218 299 3.44e-44 146
MsaG000811 AT1G29280.1 56.322 87 32 2 20 100 45 131 9.04e-29 105
MsaG000811 AT2G34830.1 54.118 85 34 2 21 100 188 272 1.93e-27 104
MsaG000811 AT2G34830.2 54.118 85 34 2 21 100 197 281 2.00e-27 104
MsaG000811 AT1G30650.1 52.941 85 35 2 21 100 190 274 1.05e-26 102
MsaG000811 AT3G58710.1 54.023 87 34 2 20 100 42 128 1.88e-25 97.1
MsaG000811 AT3G58710.2 54.651 86 33 2 21 100 42 127 3.38e-25 96.3
MsaG000811 AT4G01250.1 70.175 57 17 0 44 100 129 185 2.27e-24 94.7
MsaG000811 AT5G52830.1 55.000 80 32 1 21 100 147 222 2.72e-24 95.1
MsaG000811 AT2G38470.1 56.098 82 32 2 27 105 343 423 7.61e-23 92.4
MsaG000811 AT2G38470.1 54.386 57 24 2 44 100 185 239 5.86e-13 64.3
MsaG000811 AT2G03340.1 54.878 82 33 2 27 105 396 476 2.13e-22 91.3
MsaG000811 AT2G03340.1 50.746 67 30 3 37 102 243 307 6.94e-15 69.7
MsaG000811 AT4G31550.3 90.698 43 4 0 21 63 223 265 4.09e-22 88.2
MsaG000811 AT5G45050.2 48.750 80 37 1 21 100 1134 1209 1.20e-21 89.4
MsaG000811 AT5G45050.4 48.750 80 37 1 21 100 1023 1098 1.20e-21 89.4
MsaG000811 AT5G45050.1 48.750 80 37 1 21 100 1162 1237 1.21e-21 89.4
MsaG000811 AT1G29860.1 48.148 81 41 1 27 107 120 199 1.65e-21 86.7
MsaG000811 AT4G18170.1 50.588 85 39 2 20 102 147 230 2.95e-21 86.7
MsaG000811 AT2G04880.1 60.317 63 24 1 40 102 304 365 3.07e-21 87.8
MsaG000811 AT2G04880.2 60.317 63 24 1 40 102 280 341 3.13e-21 87.8
MsaG000811 AT4G26640.5 42.593 108 49 3 7 102 157 263 3.44e-21 87.0
MsaG000811 AT4G26640.5 43.662 71 38 2 44 114 36 104 4.40e-11 58.9
MsaG000811 AT4G26640.6 42.593 108 49 3 7 102 157 263 3.44e-21 87.0
MsaG000811 AT4G26640.6 43.662 71 38 2 44 114 36 104 4.40e-11 58.9
MsaG000811 AT4G26640.4 42.593 108 49 3 7 102 157 263 3.44e-21 87.0
MsaG000811 AT4G26640.4 43.662 71 38 2 44 114 36 104 4.40e-11 58.9
MsaG000811 AT4G26640.3 42.593 108 49 3 7 102 157 263 3.44e-21 87.0
MsaG000811 AT4G26640.3 43.662 71 38 2 44 114 36 104 4.40e-11 58.9
MsaG000811 AT4G26640.1 42.593 108 49 3 7 102 261 367 6.27e-21 87.0
MsaG000811 AT4G26640.1 43.662 71 38 2 44 114 140 208 3.47e-11 59.3
MsaG000811 AT4G26640.2 42.593 108 49 3 7 102 333 439 6.71e-21 87.0
MsaG000811 AT4G26640.2 43.662 71 38 2 44 114 212 280 3.15e-11 59.3
MsaG000811 AT4G26640.7 42.593 108 49 3 7 102 293 399 6.80e-21 87.0
MsaG000811 AT4G26640.7 43.662 71 38 2 44 114 172 240 2.95e-11 59.7
MsaG000811 AT1G13960.2 53.165 79 33 2 27 102 237 314 6.85e-21 86.3
MsaG000811 AT1G13960.2 53.226 62 26 3 40 100 72 131 1.48e-13 65.9
MsaG000811 AT4G23550.1 48.750 80 37 1 23 102 124 199 7.33e-21 85.5
MsaG000811 AT5G56270.1 47.368 95 49 1 11 105 455 548 7.69e-21 87.0
MsaG000811 AT5G56270.1 52.632 57 25 2 44 100 274 328 7.05e-12 61.2
MsaG000811 AT1G13960.1 53.165 79 33 2 27 102 390 467 9.35e-21 86.7
MsaG000811 AT1G13960.1 54.386 57 24 2 44 100 230 284 1.09e-13 66.6
MsaG000811 AT3G04670.2 80.851 47 9 0 21 67 240 286 9.48e-21 85.1
MsaG000811 AT5G07100.2 56.164 73 31 1 30 102 128 199 1.17e-20 83.2
MsaG000811 AT5G07100.2 40.449 89 38 3 35 112 19 103 5.87e-12 60.5
MsaG000811 AT5G07100.4 56.164 73 31 1 30 102 128 199 1.17e-20 83.2
MsaG000811 AT5G07100.4 40.449 89 38 3 35 112 19 103 5.87e-12 60.5
MsaG000811 AT5G07100.5 56.164 73 31 1 30 102 128 199 1.17e-20 83.2
MsaG000811 AT5G07100.5 40.449 89 38 3 35 112 19 103 5.87e-12 60.5
MsaG000811 AT5G07100.3 56.164 73 31 1 30 102 128 199 1.17e-20 83.2
MsaG000811 AT5G07100.3 40.449 89 38 3 35 112 19 103 5.87e-12 60.5
MsaG000811 AT4G31800.2 42.045 88 51 0 28 115 96 183 1.99e-20 83.2
MsaG000811 AT4G31800.1 42.045 88 51 0 28 115 161 248 2.99e-20 84.0
MsaG000811 AT5G49520.1 50.000 74 36 1 27 100 205 277 3.51e-20 84.7
MsaG000811 AT5G07100.1 56.164 73 31 1 30 102 221 292 4.37e-20 83.6
MsaG000811 AT5G07100.1 39.506 81 45 2 35 115 112 188 5.07e-12 61.2
MsaG000811 AT5G26170.1 50.000 72 35 1 30 101 100 170 5.62e-20 80.5
MsaG000811 AT3G01080.2 53.165 79 33 2 27 102 325 402 7.38e-20 84.0
MsaG000811 AT3G01080.2 57.895 57 22 2 44 100 206 260 1.15e-15 72.0
MsaG000811 AT3G01080.1 53.165 79 33 2 27 102 287 364 7.49e-20 84.0
MsaG000811 AT3G01080.1 56.452 62 24 3 40 100 163 222 1.29e-15 72.0
MsaG000811 AT2G37260.3 47.561 82 42 1 21 102 247 327 1.39e-19 82.4
MsaG000811 AT2G37260.3 55.172 58 24 2 44 101 86 141 1.36e-13 65.9
MsaG000811 AT4G26440.1 50.000 82 40 1 24 105 353 433 1.42e-19 83.2
MsaG000811 AT4G26440.1 53.448 58 25 2 44 101 179 234 1.17e-12 63.5
MsaG000811 AT2G37260.2 47.561 82 42 1 21 102 245 325 1.44e-19 82.4
MsaG000811 AT2G37260.2 55.172 58 24 2 44 101 84 139 1.37e-13 65.9
MsaG000811 AT4G39410.1 43.011 93 49 2 21 110 198 289 1.45e-19 82.0
MsaG000811 AT2G37260.1 47.561 82 42 1 21 102 327 407 2.02e-19 82.4
MsaG000811 AT2G37260.1 55.172 58 24 2 44 101 166 221 1.03e-13 66.6
MsaG000811 AT2G40740.1 48.684 76 36 2 26 98 155 230 2.12e-19 81.3
MsaG000811 AT2G40740.3 48.684 76 36 2 26 98 164 239 2.17e-19 81.6
MsaG000811 AT5G46350.1 50.685 73 35 1 30 102 170 241 2.61e-19 81.6
MsaG000811 AT4G04450.2 45.882 85 46 0 27 111 182 266 2.99e-19 82.0
MsaG000811 AT1G69310.4 45.122 82 41 2 22 100 123 203 3.35e-19 80.9
MsaG000811 AT1G69310.2 45.122 82 41 2 22 100 123 203 3.35e-19 80.9
MsaG000811 AT1G69310.1 45.122 82 41 2 22 100 123 203 3.35e-19 80.9
MsaG000811 AT4G24240.2 81.395 43 8 0 21 63 259 301 3.41e-19 80.9
MsaG000811 AT4G04450.1 45.882 85 46 0 27 111 276 360 3.43e-19 82.0
MsaG000811 AT2G47260.1 46.341 82 41 2 21 100 150 230 3.56e-19 81.3
MsaG000811 AT3G62340.1 46.341 82 43 1 19 100 94 174 9.44e-19 79.3
MsaG000811 AT1G55600.1 45.455 77 41 1 24 100 288 363 2.04e-18 79.7
MsaG000811 AT1G62300.1 46.053 76 41 0 27 102 296 371 3.72e-18 79.3
MsaG000811 AT5G15130.1 43.956 91 50 1 21 111 206 295 4.01e-18 79.0
MsaG000811 AT4G22070.4 46.053 76 41 0 27 102 281 356 4.76e-18 79.0
MsaG000811 AT4G22070.3 46.053 76 41 0 27 102 281 356 4.76e-18 79.0
MsaG000811 AT4G22070.2 46.053 76 41 0 27 102 281 356 4.76e-18 79.0
MsaG000811 AT4G22070.1 46.053 76 41 0 27 102 281 356 4.76e-18 79.0
MsaG000811 AT5G15130.2 43.956 91 50 1 21 111 164 253 4.82e-18 79.0
MsaG000811 AT1G68150.1 45.679 81 41 1 44 121 236 316 7.43e-18 77.8
MsaG000811 AT5G41570.1 39.394 99 56 2 26 121 78 175 7.56e-18 75.1
MsaG000811 AT1G64000.1 40.449 89 49 2 22 107 90 177 7.78e-18 75.5
MsaG000811 AT5G45260.1 45.679 81 36 2 22 100 1193 1267 8.32e-18 78.2
MsaG000811 AT2G44745.1 47.619 84 38 3 22 100 119 201 8.75e-18 75.9
MsaG000811 AT1G80840.1 41.333 75 44 0 35 109 138 212 1.03e-17 77.0
MsaG000811 AT1G18860.1 46.914 81 42 1 22 102 219 298 1.42e-17 77.4
MsaG000811 AT2G23320.2 72.093 43 12 0 21 63 218 260 1.63e-17 75.9
MsaG000811 AT2G46130.1 40.206 97 54 2 27 120 11 106 1.76e-17 72.4
MsaG000811 AT2G25000.2 44.595 74 41 0 28 101 88 161 1.88e-17 75.1
MsaG000811 AT2G25000.4 44.595 74 41 0 28 101 88 161 1.88e-17 75.1
MsaG000811 AT2G21900.1 54.386 57 25 1 44 100 110 165 2.35e-17 74.3
MsaG000811 AT2G25000.3 44.595 74 41 0 28 101 110 183 3.24e-17 75.1
MsaG000811 AT4G01720.1 46.053 76 41 0 27 102 223 298 3.30e-17 76.6
MsaG000811 AT2G25000.1 44.595 74 41 0 28 101 131 204 4.09e-17 75.1
MsaG000811 AT4G30935.1 50.847 59 28 1 44 102 332 389 1.02e-16 75.1
MsaG000811 AT5G13080.1 44.928 69 37 1 39 107 63 130 5.54e-16 69.7
MsaG000811 AT3G01080.3 57.895 57 22 2 44 100 206 260 8.76e-16 72.0
MsaG000811 AT5G43290.1 52.055 73 31 2 28 100 102 170 1.12e-15 71.2
MsaG000811 AT2G30250.1 42.353 85 45 2 25 106 307 390 1.71e-15 71.6
MsaG000811 AT3G01970.1 46.875 64 33 1 39 102 61 123 3.02e-15 67.8
MsaG000811 AT1G69310.3 42.683 82 39 3 22 100 123 199 8.06e-15 68.9
MsaG000811 AT5G64810.1 47.541 61 31 1 40 100 107 166 1.46e-14 67.0
MsaG000811 AT1G69810.2 39.326 89 45 2 25 112 135 215 2.15e-14 68.2
MsaG000811 AT1G69810.1 44.286 70 38 1 44 112 204 273 3.56e-14 67.8
MsaG000811 AT2G46130.2 39.286 84 43 2 27 107 11 89 3.10e-13 61.6
MsaG000811 AT4G11070.1 50.877 57 26 1 44 98 142 198 3.25e-13 64.7
MsaG000811 AT4G11070.2 50.877 57 26 1 44 98 110 166 3.35e-13 64.3
MsaG000811 AT1G66560.1 49.153 59 28 1 42 98 102 160 4.16e-13 63.9
MsaG000811 AT4G23810.1 39.326 89 48 3 16 98 127 215 1.74e-12 62.8
MsaG000811 AT2G46400.1 45.614 57 29 1 44 98 105 161 2.67e-12 62.0
MsaG000811 AT5G24110.1 45.614 57 29 1 44 98 114 170 5.98e-12 61.2
MsaG000811 AT4G12020.6 49.123 57 27 2 44 100 469 523 2.33e-11 60.1
MsaG000811 AT4G12020.8 49.123 57 27 2 44 100 469 523 2.33e-11 60.1
MsaG000811 AT4G12020.7 49.123 57 27 2 44 100 469 523 2.36e-11 60.1
MsaG000811 AT4G12020.1 49.123 57 27 2 44 100 469 523 2.40e-11 59.7
MsaG000811 AT4G12020.9 49.123 57 27 2 44 100 469 523 2.40e-11 59.7
MsaG000811 AT4G12020.10 49.123 57 27 2 44 100 469 523 2.41e-11 59.7
MsaG000811 AT4G12020.3 49.123 57 27 2 44 100 469 523 2.41e-11 59.7
MsaG000811 AT4G12020.2 49.123 57 27 2 44 100 469 523 2.50e-11 59.7
MsaG000811 AT4G12020.5 49.123 57 27 2 44 100 402 456 2.57e-11 59.7
MsaG000811 AT4G12020.4 49.123 57 27 2 44 100 469 523 2.58e-11 59.7
MsaG000811 AT5G22570.1 49.123 57 27 1 44 98 111 167 2.95e-11 59.3
MsaG000811 AT4G12020.11 49.123 57 27 2 44 100 469 523 3.49e-11 59.3
MsaG000811 AT1G66550.1 44.068 59 31 1 42 98 107 165 5.00e-11 58.2
MsaG000811 AT1G66550.2 44.068 59 31 1 42 98 102 160 5.12e-11 58.2
MsaG000811 AT5G01900.1 45.000 60 31 1 41 98 108 167 6.57e-11 58.2
MsaG000811 AT2G40750.1 40.244 82 40 3 19 98 135 209 7.85e-11 58.2

Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCACGTGTTTCCTTGC+TGG 0.172147 1:+11108174 None:intergenic
CGCATCCGGGATTGTGGGTT+TGG 0.306368 1:-11108070 MsaT000811.1:CDS
AAGAAACTTGTTACTTCTGT+TGG 0.378349 1:+11108480 None:intergenic
GCTCCACGTGTTTCCTTGCT+GGG 0.389925 1:+11108175 None:intergenic
TATAACTCTTACCGTGGATA+TGG 0.397980 1:+11108319 None:intergenic
GCGATGCAGGAGAACGCATC+CGG 0.423327 1:-11108084 MsaT000811.1:CDS
TACTATTCAAGCTGCGATGC+AGG 0.438847 1:-11108097 MsaT000811.1:CDS
AGAAACTTGTTACTTCTGTT+GGG 0.439258 1:+11108481 None:intergenic
GTACTCGTCCGGTGGTATAT+CGG 0.449763 1:+11108381 None:intergenic
TACGTTACAATCAGCATCGT+TGG 0.473963 1:+11108138 None:intergenic
GGAGAACGCATCCGGGATTG+TGG 0.492453 1:-11108076 MsaT000811.1:CDS
GAGTACTCGTGGCGGAAATA+CGG 0.498267 1:-11108364 MsaT000811.1:CDS
ATGCTGATTGTAACGTATGA+AGG 0.520363 1:-11108132 MsaT000811.1:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 1:-11108075 MsaT000811.1:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 1:+11108334 None:intergenic
ATACGGTCAGAAACCGATCA+AGG 0.544971 1:-11108347 MsaT000811.1:CDS
CGATGCAGGAGAACGCATCC+GGG 0.559528 1:-11108083 MsaT000811.1:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 1:+11108065 None:intergenic
TTCCGCCACGAGTACTCGTC+CGG 0.561775 1:+11108370 None:intergenic
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 1:-11108422 MsaT000811.1:CDS
GCTGTCTTTGAACTTATCGC+CGG 0.599022 1:+11108403 None:intergenic
TACGGTCAGAAACCGATCAA+GGG 0.612371 1:-11108346 MsaT000811.1:CDS
CGCCACGAGTACTCGTCCGG+TGG 0.638685 1:+11108373 None:intergenic
CTGTAAGAGAGTGCCCAGCA+AGG 0.647498 1:-11108188 MsaT000811.1:CDS
TCAAGGGATCACCATATCCA+CGG 0.651372 1:-11108330 MsaT000811.1:intron
AAAGACAGCCGATATACCAC+CGG 0.663684 1:-11108389 MsaT000811.1:CDS
TACCACCGGACGAGTACTCG+TGG 0.691070 1:-11108375 MsaT000811.1:CDS
GTGCCCAGCAAGGAAACACG+TGG 0.693956 1:-11108178 MsaT000811.1:CDS
CACCGGACGAGTACTCGTGG+CGG 0.727156 1:-11108372 MsaT000811.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 11108053 11108518 11108053 ID=MsaG000811
Chr1 mRNA 11108053 11108518 11108053 ID=MsaT000811.1;Parent=MsaG000811
Chr1 exon 11108053 11108230 11108053 ID=MsaT000811.1.exon2;Parent=MsaT000811.1
Chr1 CDS 11108053 11108230 11108053 ID=cds.MsaT000811.1;Parent=MsaT000811.1
Chr1 exon 11108331 11108518 11108331 ID=MsaT000811.1.exon1;Parent=MsaT000811.1
Chr1 CDS 11108331 11108518 11108331 ID=cds.MsaT000811.1;Parent=MsaT000811.1
Gene Sequence

>MsaT000811.1

ATGATTATACTAATACCCAACAGAAGTAACAAGTTTCTTGAATTTGATTTTTTTTTTACCAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACAGCCGATATACCACCGGACGAGTACTCGTGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGAGGCTATTACAAGTGTAGCACTGTAAGAGAGTGCCCAGCAAGGAAACACGTGGAGCGTGCAACAGATGATCCAACGATGCTGATTGTAACGTATGAAGGAGAGCACAGACATACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>MsaT000811.1

MIILIPNRSNKFLEFDFFFTRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRECPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST*