AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG000813

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000813 MtrunA17_Chr1g0147881 97.668 343 5 2 1 343 1 340 0.0 682
MsaG000813 MtrunA17_Chr4g0071521 50.427 351 96 10 1 322 1 302 3.41e-88 268
MsaG000813 MtrunA17_Chr4g0053281 39.899 396 127 13 1 343 1 338 6.32e-67 214
MsaG000813 MtrunA17_Chr3g0139021 64.024 164 51 5 170 331 222 379 1.56e-62 204
MsaG000813 MtrunA17_Chr5g0401821 58.394 137 50 2 208 343 141 271 9.85e-52 172
MsaG000813 MtrunA17_Chr7g0228941 65.823 79 27 0 244 322 31 109 6.91e-35 124
MsaG000813 MtrunA17_Chr2g0293481 57.955 88 32 2 240 322 237 324 5.93e-29 116
MsaG000813 MtrunA17_Chr7g0248691 62.195 82 26 2 241 322 135 211 1.41e-28 113
MsaG000813 MtrunA17_Chr2g0284321 54.762 84 37 1 242 324 11 94 9.09e-28 108
MsaG000813 MtrunA17_Chr8g0379461 52.809 89 35 1 241 322 45 133 6.12e-27 106
MsaG000813 MtrunA17_Chr2g0319961 55.556 90 34 2 241 324 50 139 1.60e-26 105
MsaG000813 MtrunA17_Chr7g0270051 51.136 88 38 1 240 322 23 110 3.21e-26 105
MsaG000813 MtrunA17_Chr8g0348311 58.537 82 29 1 241 322 136 212 9.52e-26 105
MsaG000813 MtrunA17_Chr4g0042831 50.505 99 37 3 240 327 242 339 6.06e-23 98.6
MsaG000813 MtrunA17_Chr4g0042831 50.877 57 27 1 266 322 146 201 8.96e-11 62.8
MsaG000813 MtrunA17_Chr5g0418191 57.317 82 31 2 249 327 301 381 9.45e-23 98.6
MsaG000813 MtrunA17_Chr5g0418191 34.320 169 90 7 162 324 55 208 2.85e-13 70.5
MsaG000813 MtrunA17_Chr3g0106491 40.690 145 74 4 192 326 283 425 1.79e-22 98.2
MsaG000813 MtrunA17_Chr3g0106491 50.000 68 32 2 266 333 199 264 1.68e-12 68.2
MsaG000813 MtrunA17_Chr2g0289181 59.375 64 26 0 259 322 8 71 5.42e-22 92.8
MsaG000813 MtrunA17_Chr1g0202461 50.000 80 39 1 244 322 239 318 6.35e-22 95.5
MsaG000813 MtrunA17_Chr5g0445311 52.381 84 36 2 247 327 343 425 6.41e-22 96.7
MsaG000813 MtrunA17_Chr7g0270191 37.671 146 79 5 181 322 64 201 1.13e-21 93.6
MsaG000813 MtrunA17_Chr3g0101131 46.667 105 46 4 241 337 383 485 3.07e-21 94.7
MsaG000813 MtrunA17_Chr7g0218081 53.012 83 35 2 248 327 390 471 5.70e-21 93.6
MsaG000813 MtrunA17_Chr7g0218081 47.059 85 39 4 257 337 219 301 7.68e-14 72.4
MsaG000813 MtrunA17_Chr5g0432161 56.098 82 32 2 249 327 402 482 7.48e-21 93.6
MsaG000813 MtrunA17_Chr5g0432161 54.386 57 24 2 266 322 245 299 6.63e-12 66.6
MsaG000813 MtrunA17_Chr4g0004911 38.168 131 65 4 197 324 277 394 9.49e-21 92.8
MsaG000813 MtrunA17_Chr4g0004911 50.877 57 27 1 266 322 185 240 5.73e-12 66.6
MsaG000813 MtrunA17_Chr4g0051881 44.706 85 46 1 252 336 165 248 1.03e-20 91.7
MsaG000813 MtrunA17_Chr3g0079691 52.439 82 38 1 246 327 476 556 1.68e-20 92.8
MsaG000813 MtrunA17_Chr3g0079691 54.386 57 24 2 266 322 281 335 1.85e-12 68.6
MsaG000813 MtrunA17_Chr8g0387501 61.404 57 22 0 266 322 130 186 3.48e-20 89.0
MsaG000813 MtrunA17_Chr7g0249301 49.398 83 38 2 248 327 272 353 5.36e-20 90.1
MsaG000813 MtrunA17_Chr7g0249301 54.386 57 24 2 266 322 63 117 3.08e-12 67.0
MsaG000813 MtrunA17_Chr7g0249311 48.421 95 46 2 246 338 373 466 6.04e-20 90.9
MsaG000813 MtrunA17_Chr7g0249311 50.000 68 29 3 255 322 172 234 3.73e-12 67.4
MsaG000813 MtrunA17_Chr2g0322391 47.561 82 43 0 249 330 333 414 6.63e-20 90.9
MsaG000813 MtrunA17_Chr7g0243891 41.732 127 56 5 204 327 324 435 9.46e-20 90.1
MsaG000813 MtrunA17_Chr7g0243891 54.386 57 24 2 266 322 217 271 5.64e-11 63.5
MsaG000813 MtrunA17_Chr7g0263531 51.471 68 32 1 257 324 353 419 1.74e-19 89.0
MsaG000813 MtrunA17_Chr7g0263531 47.619 84 41 3 257 339 180 261 4.56e-16 79.0
MsaG000813 MtrunA17_Chr2g0288871 48.649 74 38 0 249 322 289 362 2.98e-19 88.6
MsaG000813 MtrunA17_Chr7g0270831 40.426 141 58 7 189 322 152 273 3.57e-19 88.2
MsaG000813 MtrunA17_Chr5g0443131 45.679 81 43 1 252 332 144 223 1.01e-18 85.5
MsaG000813 MtrunA17_Chr7g0238921 38.261 115 64 4 210 322 71 180 1.05e-18 85.5
MsaG000813 MtrunA17_Chr4g0075201 48.649 74 38 0 249 322 251 324 1.27e-18 86.7
MsaG000813 MtrunA17_Chr1g0194481 43.529 85 45 2 240 322 131 214 1.84e-18 84.7
MsaG000813 MtrunA17_Chr3g0126391 40.441 136 54 8 210 337 84 200 1.97e-18 85.1
MsaG000813 MtrunA17_Chr3g0099641 43.421 76 43 0 249 324 235 310 2.01e-18 85.9
MsaG000813 MtrunA17_Chr3g0136961 48.611 72 37 0 251 322 124 195 2.39e-18 84.0
MsaG000813 MtrunA17_Chr4g0001361 53.846 65 30 0 258 322 155 219 2.59e-18 84.3
MsaG000813 MtrunA17_Chr1g0150801 50.704 71 34 1 252 322 89 158 2.64e-18 80.9
MsaG000813 MtrunA17_Chr4g0025061 53.731 67 31 0 266 332 361 427 3.53e-18 85.5
MsaG000813 MtrunA17_Chr2g0333851 44.048 84 43 1 239 322 147 226 4.05e-18 84.0
MsaG000813 MtrunA17_Chr4g0051181 39.796 98 40 1 244 322 203 300 5.87e-18 84.7
MsaG000813 MtrunA17_Chr7g0216891 46.988 83 36 2 246 326 204 280 6.96e-18 84.7
MsaG000813 MtrunA17_Chr1g0150281 52.632 57 27 0 266 322 141 197 7.40e-18 82.4
MsaG000813 MtrunA17_Chr2g0294231 45.333 75 40 1 248 322 186 259 9.97e-18 83.6
MsaG000813 MtrunA17_Chr3g0129361 45.783 83 41 2 251 330 127 208 1.11e-17 80.9
MsaG000813 MtrunA17_Chr8g0383351 48.052 77 35 2 251 323 142 217 1.26e-17 80.9
MsaG000813 MtrunA17_Chr5g0418781 43.902 82 45 1 241 322 100 180 1.50e-17 81.6
MsaG000813 MtrunA17_Chr8g0335811 45.783 83 41 2 244 323 130 211 1.86e-17 80.5
MsaG000813 MtrunA17_Chr4g0074001 57.895 57 23 1 266 322 360 415 3.38e-17 82.4
MsaG000813 MtrunA17_Chr8g0383251 43.182 88 44 2 242 324 80 166 3.42e-17 78.6
MsaG000813 MtrunA17_Chr7g0248721 31.056 161 94 5 184 329 45 203 3.74e-17 79.3
MsaG000813 MtrunA17_Chr4g0060271 52.542 59 28 0 266 324 256 314 9.43e-17 81.3
MsaG000813 MtrunA17_Chr7g0275531 43.529 85 44 2 240 320 91 175 1.08e-16 79.7
MsaG000813 MtrunA17_Chr7g0224801 49.231 65 32 1 261 325 89 152 1.88e-16 76.3
MsaG000813 MtrunA17_Chr1g0188941 44.578 83 45 1 246 328 32 113 2.19e-16 74.3
MsaG000813 MtrunA17_Chr2g0302391 52.542 59 28 0 266 324 212 270 2.53e-16 79.7
MsaG000813 MtrunA17_Chr4g0068541 44.595 74 40 1 249 322 192 264 2.56e-16 79.3
MsaG000813 MtrunA17_Chr3g0129321 45.000 80 43 1 243 322 96 174 2.91e-16 76.6
MsaG000813 MtrunA17_Chr5g0447701 49.296 71 35 1 252 322 239 308 3.26e-16 79.0
MsaG000813 MtrunA17_Chr4g0025051 50.746 67 33 0 266 332 336 402 4.76e-16 79.3
MsaG000813 MtrunA17_Chr1g0150271 46.774 62 33 0 263 324 99 160 2.54e-15 74.7
MsaG000813 MtrunA17_Chr5g0402931 60.345 58 20 2 265 322 123 177 3.34e-15 72.8
MsaG000813 MtrunA17_Chr8g0347251 41.573 89 49 2 238 323 108 196 5.88e-15 75.1
MsaG000813 MtrunA17_Chr6g0485431 49.254 67 32 2 266 331 155 220 8.32e-15 74.7
MsaG000813 MtrunA17_Chr1g0189391 58.065 62 24 2 262 322 94 154 1.12e-14 73.9
MsaG000813 MtrunA17_Chr8g0386241 39.706 68 40 1 262 329 100 166 1.11e-13 68.6
MsaG000813 MtrunA17_Chr8g0387981 36.538 104 52 4 228 320 89 189 1.28e-13 71.2
MsaG000813 MtrunA17_Chr5g0428351 42.857 84 39 3 239 320 164 240 2.00e-12 67.0
MsaG000813 MtrunA17_Chr4g0024391 42.169 83 46 1 248 330 214 294 5.15e-12 66.6
MsaG000813 MtrunA17_Chr2g0315361 35.294 102 64 1 221 320 104 205 1.11e-11 64.7
MsaG000813 MtrunA17_Chr3g0128671 40.244 82 39 2 241 320 111 184 1.95e-11 64.3
MsaG000813 MtrunA17_Chr7g0244981 36.842 95 56 3 229 320 86 179 3.51e-11 63.2
MsaG000813 MtrunA17_Chr2g0315381 38.667 75 44 1 248 320 127 201 6.62e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG000813 AT4G31550.1 59.551 356 98 12 1 342 1 324 1.87e-127 368
MsaG000813 AT4G31550.2 59.551 356 97 13 1 342 1 323 1.43e-126 366
MsaG000813 AT2G24570.1 59.659 352 100 14 1 342 1 320 1.28e-117 343
MsaG000813 AT4G31550.3 55.556 297 88 11 1 285 1 265 2.76e-90 271
MsaG000813 AT4G24240.1 43.258 356 154 12 1 324 1 340 2.87e-68 218
MsaG000813 AT2G23320.1 38.527 353 134 9 1 324 1 299 5.02e-63 203
MsaG000813 AT3G04670.1 37.500 344 160 11 11 323 1 320 1.49e-56 187
MsaG000813 AT2G30590.1 54.913 173 65 5 154 322 207 370 2.48e-55 185
MsaG000813 AT5G28650.1 35.942 345 164 11 11 323 1 320 2.69e-51 173
MsaG000813 AT2G23320.2 33.968 315 123 10 1 285 1 260 1.20e-34 128
MsaG000813 AT3G04670.2 32.903 310 153 11 11 289 1 286 2.06e-31 120
MsaG000813 AT4G24240.2 54.310 116 43 3 170 285 196 301 2.17e-29 115
MsaG000813 AT2G34830.1 55.682 88 34 2 240 322 185 272 9.43e-29 115
MsaG000813 AT2G34830.2 55.682 88 34 2 240 322 194 281 1.04e-28 115
MsaG000813 AT1G29280.1 57.609 92 32 3 238 322 40 131 3.16e-28 110
MsaG000813 AT1G30650.1 54.545 88 35 2 240 322 187 274 2.77e-27 111
MsaG000813 AT4G01250.1 57.143 91 33 2 232 322 101 185 5.13e-26 105
MsaG000813 AT3G58710.2 55.682 88 33 2 241 322 40 127 1.20e-25 104
MsaG000813 AT3G58710.1 55.682 88 33 2 241 322 41 128 3.19e-25 103
MsaG000813 AT5G52830.1 54.878 82 33 1 241 322 145 222 1.43e-24 102
MsaG000813 AT2G38470.1 57.317 82 31 2 249 327 343 423 7.30e-23 99.8
MsaG000813 AT2G38470.1 54.386 57 24 2 266 322 185 239 8.14e-12 66.6
MsaG000813 AT5G45050.2 50.000 82 37 1 241 322 1132 1209 1.99e-21 96.3
MsaG000813 AT5G45050.1 50.000 82 37 1 241 322 1160 1237 2.03e-21 96.3
MsaG000813 AT1G13960.2 55.696 79 31 2 249 324 237 314 3.56e-21 93.6
MsaG000813 AT1G13960.2 54.839 62 25 3 262 322 72 131 8.58e-14 72.0
MsaG000813 AT2G03340.1 49.495 99 37 3 241 327 379 476 3.72e-21 94.7
MsaG000813 AT2G03340.1 50.746 67 30 3 259 324 243 307 6.12e-14 73.2
MsaG000813 AT5G07100.2 57.534 73 30 1 252 324 128 199 5.28e-21 90.1
MsaG000813 AT5G07100.4 57.534 73 30 1 252 324 128 199 5.28e-21 90.1
MsaG000813 AT5G07100.5 57.534 73 30 1 252 324 128 199 5.28e-21 90.1
MsaG000813 AT5G07100.3 57.534 73 30 1 252 324 128 199 5.28e-21 90.1
MsaG000813 AT1G13960.1 55.696 79 31 2 249 324 390 467 6.03e-21 94.0
MsaG000813 AT1G13960.1 54.839 62 25 3 262 322 225 284 8.66e-14 72.8
MsaG000813 AT2G04880.2 61.905 63 23 1 262 324 280 341 6.36e-21 93.6
MsaG000813 AT2G04880.1 61.905 63 23 1 262 324 304 365 7.63e-21 93.6
MsaG000813 AT5G45050.4 50.000 82 37 1 241 322 1021 1098 8.66e-21 94.4
MsaG000813 AT4G23550.1 50.000 80 36 1 245 324 124 199 8.69e-21 91.7
MsaG000813 AT4G26640.5 54.545 77 31 2 251 324 188 263 1.21e-20 92.4
MsaG000813 AT4G26640.6 54.545 77 31 2 251 324 188 263 1.21e-20 92.4
MsaG000813 AT4G26640.4 54.545 77 31 2 251 324 188 263 1.21e-20 92.4
MsaG000813 AT4G26640.3 54.545 77 31 2 251 324 188 263 1.21e-20 92.4
MsaG000813 AT5G49520.1 51.351 74 35 1 249 322 205 277 1.29e-20 92.4
MsaG000813 AT1G29860.1 48.148 81 41 1 249 329 120 199 1.57e-20 90.5
MsaG000813 AT5G07100.1 46.739 92 48 1 233 324 202 292 1.58e-20 90.9
MsaG000813 AT5G26170.1 51.389 72 34 1 252 323 100 170 2.13e-20 87.4
MsaG000813 AT4G26640.2 54.545 77 31 2 251 324 364 439 2.33e-20 92.4
MsaG000813 AT4G26640.1 54.545 77 31 2 251 324 292 367 2.34e-20 92.0
MsaG000813 AT4G26640.7 54.545 77 31 2 251 324 324 399 2.51e-20 92.4
MsaG000813 AT5G56270.1 53.659 82 37 1 246 327 468 548 3.81e-20 92.0
MsaG000813 AT5G56270.1 52.632 57 25 2 266 322 274 328 5.35e-11 64.3
MsaG000813 AT4G18170.1 46.154 91 48 1 234 324 141 230 6.72e-20 89.4
MsaG000813 AT2G37260.3 42.742 124 63 3 201 324 212 327 7.00e-20 89.7
MsaG000813 AT2G37260.3 53.448 58 25 2 266 323 86 141 3.17e-12 67.4
MsaG000813 AT2G37260.2 42.742 124 63 3 201 324 210 325 8.08e-20 89.4
MsaG000813 AT2G37260.2 53.448 58 25 2 266 323 84 139 3.40e-12 67.0
MsaG000813 AT2G37260.1 42.742 124 63 3 201 324 292 407 1.14e-19 89.7
MsaG000813 AT2G37260.1 53.448 58 25 2 266 323 166 221 2.94e-12 67.8
MsaG000813 AT2G40740.1 34.532 139 78 3 185 320 102 230 1.47e-19 87.8
MsaG000813 AT4G39410.1 47.126 87 42 2 240 323 195 280 1.89e-19 87.8
MsaG000813 AT2G40740.3 34.532 139 78 3 185 320 111 239 1.98e-19 87.8
MsaG000813 AT4G04450.2 50.000 74 37 0 249 322 182 255 2.79e-19 88.6
MsaG000813 AT4G26440.1 51.220 82 39 1 246 327 353 433 2.99e-19 89.4
MsaG000813 AT4G26440.1 53.448 58 25 2 266 323 179 234 1.03e-11 66.2
MsaG000813 AT4G04450.1 50.000 74 37 0 249 322 276 349 5.27e-19 88.2
MsaG000813 AT1G69310.4 48.837 86 39 3 240 322 120 203 6.13e-19 85.9
MsaG000813 AT1G69310.2 48.837 86 39 3 240 322 120 203 6.13e-19 85.9
MsaG000813 AT1G69310.1 48.837 86 39 3 240 322 120 203 6.13e-19 85.9
MsaG000813 AT2G47260.1 43.902 82 45 1 241 322 150 230 6.57e-19 86.7
MsaG000813 AT4G31800.2 46.575 73 39 0 250 322 96 168 1.06e-18 84.7
MsaG000813 AT3G01080.2 53.165 79 33 2 249 324 325 402 1.32e-18 87.0
MsaG000813 AT3G01080.2 56.452 62 24 3 262 322 201 260 1.58e-14 74.7
MsaG000813 AT3G01080.1 53.165 79 33 2 249 324 287 364 1.46e-18 86.7
MsaG000813 AT3G01080.1 56.452 62 24 3 262 322 163 222 1.89e-14 74.3
MsaG000813 AT4G31800.1 46.575 73 39 0 250 322 161 233 1.72e-18 85.1
MsaG000813 AT4G22070.4 48.649 74 38 0 249 322 281 354 1.75e-18 86.7
MsaG000813 AT4G22070.3 48.649 74 38 0 249 322 281 354 1.75e-18 86.7
MsaG000813 AT4G22070.2 48.649 74 38 0 249 322 281 354 1.75e-18 86.7
MsaG000813 AT4G22070.1 48.649 74 38 0 249 322 281 354 1.75e-18 86.7
MsaG000813 AT1G62300.1 48.649 74 38 0 249 322 296 369 1.76e-18 87.0
MsaG000813 AT5G46350.1 50.685 73 35 1 252 324 170 241 2.61e-18 84.7
MsaG000813 AT5G15130.2 47.561 82 42 1 243 324 164 244 3.65e-18 85.9
MsaG000813 AT5G15130.1 47.561 82 42 1 243 324 206 286 3.87e-18 85.9
MsaG000813 AT2G44745.1 41.414 99 54 2 227 322 104 201 1.07e-17 81.3
MsaG000813 AT3G62340.1 47.500 80 41 1 243 322 96 174 1.27e-17 82.0
MsaG000813 AT4G01720.1 48.649 74 38 0 249 322 223 296 1.81e-17 83.6
MsaG000813 AT5G45260.1 32.530 166 80 4 159 322 1132 1267 3.57e-17 83.6
MsaG000813 AT1G68150.1 56.140 57 25 0 266 322 236 292 7.75e-17 81.3
MsaG000813 AT1G55600.1 44.156 77 42 1 246 322 288 363 7.93e-17 81.6
MsaG000813 AT1G64000.1 40.449 89 49 2 244 329 90 177 8.93e-17 78.2
MsaG000813 AT4G30935.1 51.613 62 29 1 263 324 329 389 9.77e-17 81.3
MsaG000813 AT5G41570.1 42.353 85 45 2 248 329 78 161 1.16e-16 77.4
MsaG000813 AT2G46130.1 42.857 84 44 2 249 329 11 93 1.81e-16 74.7
MsaG000813 AT1G18860.1 48.101 79 40 1 244 322 219 296 2.20e-16 80.5
MsaG000813 AT5G13080.1 46.053 76 39 2 261 336 63 136 2.38e-16 75.5
MsaG000813 AT1G80840.1 38.776 98 54 2 239 331 116 212 2.77e-16 78.6
MsaG000813 AT2G25000.2 44.595 74 41 0 250 323 88 161 3.54e-16 77.0
MsaG000813 AT2G25000.4 44.595 74 41 0 250 323 88 161 3.54e-16 77.0
MsaG000813 AT2G25000.3 44.595 74 41 0 250 323 110 183 6.49e-16 76.6
MsaG000813 AT2G30250.1 43.023 86 45 2 247 329 307 391 8.35e-16 78.2
MsaG000813 AT2G25000.1 44.595 74 41 0 250 323 131 204 8.48e-16 77.0
MsaG000813 AT3G01970.1 48.438 64 32 1 261 324 61 123 8.96e-16 73.9
MsaG000813 AT2G21900.1 54.386 57 25 1 266 322 110 165 1.02e-15 75.1
MsaG000813 AT5G64810.1 45.070 71 38 1 252 322 97 166 2.04e-15 74.3
MsaG000813 AT3G01080.3 57.895 57 22 2 266 322 206 260 9.04e-15 74.7
MsaG000813 AT5G43290.1 50.667 75 33 2 248 322 100 170 9.16e-15 73.9
MsaG000813 AT1G69310.3 46.512 86 37 4 240 322 120 199 1.23e-14 73.6
MsaG000813 AT4G11070.2 43.373 83 44 2 241 320 84 166 2.54e-13 69.7
MsaG000813 AT4G11070.1 43.373 83 44 2 241 320 116 198 2.90e-13 70.1
MsaG000813 AT1G69810.1 37.374 99 53 2 225 322 171 261 7.73e-13 69.3
MsaG000813 AT1G69810.2 37.374 99 53 2 225 322 113 203 8.93e-13 68.6
MsaG000813 AT3G56400.1 32.743 113 71 3 212 320 66 177 1.31e-12 67.8
MsaG000813 AT2G46130.2 39.286 84 43 2 249 329 11 89 1.82e-12 63.5
MsaG000813 AT5G24110.1 41.772 79 39 3 246 320 95 170 2.26e-12 67.4
MsaG000813 AT1G66560.1 49.153 59 28 1 264 320 102 160 2.37e-12 66.6
MsaG000813 AT2G46400.1 35.789 95 57 2 230 320 67 161 3.23e-12 66.6
MsaG000813 AT4G23810.1 33.929 112 71 2 212 320 104 215 3.58e-12 67.0
MsaG000813 AT4G12020.6 50.877 57 26 2 266 322 469 523 3.05e-11 65.5
MsaG000813 AT4G12020.8 50.877 57 26 2 266 322 469 523 3.05e-11 65.5
MsaG000813 AT4G12020.3 50.877 57 26 2 266 322 469 523 3.40e-11 65.1
MsaG000813 AT4G12020.10 50.877 57 26 2 266 322 469 523 3.49e-11 65.1
MsaG000813 AT4G12020.7 50.877 57 26 2 266 322 469 523 3.53e-11 65.1
MsaG000813 AT4G12020.1 50.877 57 26 2 266 322 469 523 3.53e-11 65.1
MsaG000813 AT4G12020.9 50.877 57 26 2 266 322 469 523 3.53e-11 65.1
MsaG000813 AT4G12020.4 50.877 57 26 2 266 322 469 523 3.92e-11 65.1
MsaG000813 AT4G12020.2 50.877 57 26 2 266 322 469 523 4.07e-11 65.1
MsaG000813 AT4G12020.5 50.877 57 26 2 266 322 402 456 4.08e-11 65.1
MsaG000813 AT4G12020.11 50.877 57 26 2 266 322 469 523 4.99e-11 64.7
MsaG000813 AT2G40750.1 34.444 90 49 2 233 320 128 209 6.00e-11 63.5

Find 102 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCAACGTGTTTCCTTGC+TGG 0.192745 1:+11118143 None:intergenic
GAACATTCCGATGACGTTTC+AGG 0.218659 1:-11120136 MsaT000813.1:CDS
TTTATGTCATCTGCTATTAC+TGG 0.300028 1:-11120286 MsaT000813.1:CDS
CGCATCCGGGATTGTGGGTT+TGG 0.306368 1:-11118039 MsaT000813.1:CDS
GAGATAGCTGGTGTCGCCGC+TGG 0.336141 1:+11120217 None:intergenic
GAGCTCAAAACGACGTCGTT+TGG 0.354917 1:+11120385 None:intergenic
TTCTGATGCAGCCTCTTGTA+TGG 0.355564 1:+11120765 None:intergenic
GAACCGGGGCGCGTCTGAAC+CGG 0.362386 1:+11120611 None:intergenic
GGCGCGTGACGCACGGAGAT+TGG 0.371570 1:+11120460 None:intergenic
GACGGAGAAGGAAAGTGTTT+TGG 0.384362 1:+11120502 None:intergenic
TTGGTTGATGAGAAAGGGTT+AGG 0.397259 1:+11120716 None:intergenic
TATAACTCTTACCGTGGATA+TGG 0.397980 1:+11118288 None:intergenic
ACTGGTGATGGAAGCGTTAA+CGG 0.421732 1:-11120268 MsaT000813.1:CDS
CACTATTCAAGCTGCGATGC+AGG 0.421891 1:-11118066 MsaT000813.1:CDS
GCGATGCAGGAGAACGCATC+CGG 0.423327 1:-11118053 MsaT000813.1:CDS
GCTCAACGTGTTTCCTTGCT+GGG 0.423889 1:+11118144 None:intergenic
GCGTCTGAACCGGGCGTGAC+CGG 0.426753 1:+11120621 None:intergenic
TTCATCACCACCGGTTCAAC+CGG 0.430740 1:-11120575 MsaT000813.1:CDS
AACATTCCGATGACGTTTCA+GGG 0.431021 1:-11120135 MsaT000813.1:CDS
ATTGAGTTGGTTGATGAGAA+AGG 0.438129 1:+11120710 None:intergenic
CGGCGGAAAACCGCCGCTAT+CGG 0.446685 1:-11120194 MsaT000813.1:CDS
ATCTCTTTACTTAACCGAAC+CGG 0.452961 1:-11120640 MsaT000813.1:CDS
TGAATCTGAACCGGTTGAAC+CGG 0.453562 1:+11120565 None:intergenic
AGTTGAGTGTTTAATTGAGT+TGG 0.455065 1:+11120697 None:intergenic
GAAGATGAGGAGGAATGAAC+CGG 0.456286 1:+11120595 None:intergenic
ATGCTGATTGTAACGTATGA+AGG 0.457248 1:-11118101 MsaT000813.1:CDS
GAGTACTCATGGCGGAAATA+CGG 0.458622 1:-11118333 MsaT000813.1:CDS
GACAGGGTTGGTGTTTGAAC+CGG 0.458926 1:+11120529 None:intergenic
CTGGTGATGGAAGCGTTAAC+GGG 0.460991 1:-11120267 MsaT000813.1:CDS
TTGAGTTGGTTGATGAGAAA+GGG 0.466292 1:+11120711 None:intergenic
GTACTCGTCCGGTGGTATAT+CGG 0.473843 1:+11118350 None:intergenic
TACGTTACAATCAGCATCGT+TGG 0.473963 1:+11118107 None:intergenic
CGCCCGGTTCAGACGCGCCC+CGG 0.476428 1:-11120614 MsaT000813.1:CDS
GATTCAATCCACTCCTTCAC+CGG 0.477697 1:-11120548 MsaT000813.1:CDS
CTCCTCATCTTCATCACCAC+CGG 0.490654 1:-11120584 MsaT000813.1:CDS
GGAGAACGCATCCGGGATTG+TGG 0.492453 1:-11118045 MsaT000813.1:CDS
AACCGGGGCGCGTCTGAACC+GGG 0.500032 1:+11120612 None:intergenic
TCATCTGCTATTACTGGTGA+TGG 0.500505 1:-11120280 MsaT000813.1:CDS
TGAACCGGGCGTGACCGGTT+CGG 0.504434 1:+11120626 None:intergenic
AATCAGCATCGTTGGATCGT+CGG 0.504895 1:+11118115 None:intergenic
AGATAGCTGGTGTCGCCGCT+GGG 0.505573 1:+11120218 None:intergenic
AAATATGGCAGTGGAACTCA+TGG 0.506689 1:-11120815 None:intergenic
TACAAGTGTAGTACAGTGAG+AGG 0.510799 1:-11118170 MsaT000813.1:CDS
CGGCGGTGCCGTCTAAGAAA+AGG 0.512268 1:-11120174 MsaT000813.1:CDS
ATTGGCGCCGGTGACAGTGC+AGG 0.516466 1:+11120478 None:intergenic
CGGAAAACCGCCGCTATCGG+CGG 0.520458 1:-11120191 MsaT000813.1:CDS
AAGAAAAGGTGTCATGATCA+TGG 0.525519 1:-11120160 MsaT000813.1:CDS
AATCTCCGTGCGTCACGCGC+CGG 0.525708 1:-11120458 MsaT000813.1:CDS
GCGGCGACACCAGCTATCTC+CGG 0.537481 1:-11120214 MsaT000813.1:CDS
TCCGTCACCTGCACTGTCAC+CGG 0.537546 1:-11120485 MsaT000813.1:CDS
GGAAGCGTTAACGGGAAACA+AGG 0.537738 1:-11120259 MsaT000813.1:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 1:-11118044 MsaT000813.1:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 1:+11118303 None:intergenic
ATACAAGAGGCTGCATCAGA+AGG 0.544462 1:-11120763 MsaT000813.1:CDS
ATACGGTCAGAAACCGATCA+AGG 0.544971 1:-11118316 MsaT000813.1:CDS
CTCTTTCTAAAATATGGCAG+TGG 0.548169 1:-11120824 None:intergenic
GTTGGTGTTTGAACCGGTGA+AGG 0.548366 1:+11120535 None:intergenic
TTCCGCCATGAGTACTCGTC+CGG 0.550529 1:+11118339 None:intergenic
TTAACCGAACCGGTCACGCC+CGG 0.551066 1:-11120630 MsaT000813.1:CDS
GCTCGCCGGCGCGTGACGCA+CGG 0.552645 1:+11120453 None:intergenic
TGCTGATTGTAACGTATGAA+GGG 0.555435 1:-11118100 MsaT000813.1:CDS
CGATGCAGGAGAACGCATCC+GGG 0.559528 1:-11118052 MsaT000813.1:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 1:+11118034 None:intergenic
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 1:-11118391 MsaT000813.1:CDS
GACGGCACCGCCGATAGCGG+CGG 0.571524 1:+11120184 None:intergenic
TTAGACGGCACCGCCGATAG+CGG 0.572147 1:+11120181 None:intergenic
AAGATGAGGAGGAATGAACC+GGG 0.573874 1:+11120596 None:intergenic
TGCGGTTGAACAAAGCTCGC+CGG 0.578616 1:+11120439 None:intergenic
GGAGTGGATTGAATCTGAAC+CGG 0.578656 1:+11120556 None:intergenic
TGACGCACGGAGATTGGCGC+CGG 0.582468 1:+11120466 None:intergenic
GAACTTAGAAACGGTGTGGT+CGG 0.585451 1:+11120672 None:intergenic
CAGTGAGAGGGTGCCCAGCA+AGG 0.588389 1:-11118157 MsaT000813.1:CDS
GACAGTGCAGGTGACGGAGA+AGG 0.589986 1:+11120490 None:intergenic
CGCCATGAGTACTCGTCCGG+TGG 0.590482 1:+11118342 None:intergenic
GCCGGTGACAGTGCAGGTGA+CGG 0.596080 1:+11120484 None:intergenic
AGTGTCATGCTGTGTGGTTG+CGG 0.596455 1:+11120421 None:intergenic
TACCACCGGACGAGTACTCA+TGG 0.597468 1:-11118344 MsaT000813.1:CDS
ATCAGAAGGACTCAAAGGTA+TGG 0.599816 1:-11120749 MsaT000813.1:CDS
GCGGTCTTTGAACTTATCGC+CGG 0.605125 1:+11118372 None:intergenic
AATATGGCAGTGGAACTCAT+GGG 0.612087 1:-11120814 MsaT000813.1:CDS
TACGGTCAGAAACCGATCAA+GGG 0.612371 1:-11118315 MsaT000813.1:CDS
CGGTGGTGATGAAGATGAGG+AGG 0.613126 1:+11120585 None:intergenic
ATTCGACCCTGAAACGTCAT+CGG 0.616411 1:+11120129 None:intergenic
GCTGCATCAGAAGGACTCAA+AGG 0.616681 1:-11120754 MsaT000813.1:CDS
CGAGAATTCAAGCTCAACCA+TGG 0.618884 1:+11120348 None:intergenic
TGTTTGAACCGGTGAAGGAG+TGG 0.635060 1:+11120540 None:intergenic
ATCTGAACCGGTTGAACCGG+TGG 0.642716 1:+11120568 None:intergenic
AGTGCCACTGTGTCAAGAGA+AGG 0.645447 1:-11120105 MsaT000813.1:intron
GGTTGAGCTTGAATTCTCGA+AGG 0.647277 1:-11120344 MsaT000813.1:CDS
GCTGATTGTAACGTATGAAG+GGG 0.650464 1:-11118099 MsaT000813.1:CDS
TCAAGGGATCACCATATCCA+CGG 0.651372 1:-11118299 MsaT000813.1:intron
ACAAGTGTAGTACAGTGAGA+GGG 0.657147 1:-11118169 MsaT000813.1:CDS
AACCGGTGGTGATGAAGATG+AGG 0.659341 1:+11120582 None:intergenic
AAAGACCGCCGATATACCAC+CGG 0.663684 1:-11118358 MsaT000813.1:CDS
GCGACACCAGCTATCTCCGG+CGG 0.665830 1:-11120211 MsaT000813.1:CDS
ATATGGCAGTGGAACTCATG+GGG 0.666077 1:-11120813 MsaT000813.1:CDS
CTCGTCCGGTGGTATATCGG+CGG 0.695312 1:+11118353 None:intergenic
GAAGCGTTAACGGGAAACAA+GGG 0.708559 1:-11120258 MsaT000813.1:CDS
AAATCGAGTGTCATGCTGTG+TGG 0.710920 1:+11120415 None:intergenic
TGTACCTTCTCTTGACACAG+TGG 0.717082 1:+11120101 None:intergenic
AGATGAGGAGGAATGAACCG+GGG 0.738996 1:+11120597 None:intergenic
CACCGGACGAGTACTCATGG+CGG 0.773189 1:-11118341 MsaT000813.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 11118022 11120833 11118022 ID=MsaG000813
Chr1 mRNA 11118022 11120833 11118022 ID=MsaT000813.1;Parent=MsaG000813
Chr1 exon 11118022 11118199 11118022 ID=MsaT000813.1.exon3;Parent=MsaT000813.1
Chr1 CDS 11118022 11118199 11118022 ID=cds.MsaT000813.1;Parent=MsaT000813.1
Chr1 exon 11118300 11118425 11118300 ID=MsaT000813.1.exon2;Parent=MsaT000813.1
Chr1 CDS 11118300 11118425 11118300 ID=cds.MsaT000813.1;Parent=MsaT000813.1
Chr1 exon 11120106 11120833 11120106 ID=MsaT000813.1.exon1;Parent=MsaT000813.1
Chr1 CDS 11120106 11120833 11120106 ID=cds.MsaT000813.1;Parent=MsaT000813.1
Gene Sequence

>MsaT000813.1

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCCTCCTCATCTTCATCACCACCGGTTCAACCGGTTCAGATTCAATCCACTCCTTCACCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCTGCACTGTCACCGGCGCCAATCTCCGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACACCAGCTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCTAAGAAAAGGTGTCATGATCATGGTGAACATTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACCGCCGATATACCACCGGACGAGTACTCATGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGAGGCTATTACAAGTGTAGTACAGTGAGAGGGTGCCCAGCAAGGAAACACGTTGAGCGTGCAACCGACGATCCAACGATGCTGATTGTAACGTATGAAGGGGAGCACAGACACACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>MsaT000813.1

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPAISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST*