Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000851 | XP_003588595.1 | 96.154 | 286 | 8 | 2 | 1 | 284 | 54 | 338 | 0.0 | 554 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000851 | sp|Q9FUD3|BZIP9_ARATH | 48.425 | 254 | 100 | 7 | 39 | 284 | 46 | 276 | 2.46e-60 | 196 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000851 | tr|G7I545|G7I545_MEDTR | 96.154 | 286 | 8 | 2 | 1 | 284 | 54 | 338 | 0.0 | 554 |
Gene ID | Type | Classification |
---|---|---|
MsaG000851 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000851 | MtrunA17_Chr1g0147491 | 96.154 | 286 | 8 | 2 | 1 | 284 | 54 | 338 | 0.0 | 554 |
MsaG000851 | MtrunA17_Chr3g0139301 | 62.105 | 285 | 75 | 14 | 10 | 284 | 33 | 294 | 9.48e-98 | 289 |
MsaG000851 | MtrunA17_Chr1g0190761 | 58.065 | 124 | 48 | 2 | 86 | 205 | 177 | 300 | 1.41e-27 | 110 |
MsaG000851 | MtrunA17_Chr7g0274141 | 52.381 | 147 | 54 | 4 | 64 | 205 | 150 | 285 | 2.64e-26 | 106 |
MsaG000851 | MtrunA17_Chr3g0139571 | 78.378 | 74 | 16 | 0 | 116 | 189 | 1 | 74 | 3.56e-26 | 98.6 |
MsaG000851 | MtrunA17_Chr3g0144941 | 41.558 | 77 | 45 | 0 | 114 | 190 | 27 | 103 | 8.42e-12 | 62.0 |
MsaG000851 | MtrunA17_Chr1g0155551 | 29.747 | 158 | 96 | 2 | 89 | 246 | 3 | 145 | 9.10e-12 | 62.0 |
MsaG000851 | MtrunA17_Chr8g0341311 | 43.478 | 92 | 47 | 1 | 98 | 189 | 60 | 146 | 2.23e-11 | 61.6 |
MsaG000851 | MtrunA17_Chr6g0456061 | 40.385 | 104 | 56 | 3 | 102 | 204 | 77 | 175 | 2.27e-11 | 62.0 |
MsaG000851 | MtrunA17_Chr8g0378901 | 34.884 | 86 | 56 | 0 | 111 | 196 | 29 | 114 | 2.71e-11 | 60.8 |
MsaG000851 | MtrunA17_Chr7g0225661 | 43.478 | 92 | 47 | 1 | 98 | 189 | 70 | 156 | 2.86e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG000851 | AT5G24800.1 | 48.425 | 254 | 100 | 7 | 39 | 284 | 46 | 276 | 2.50e-61 | 196 |
MsaG000851 | AT5G28770.1 | 58.333 | 108 | 43 | 1 | 101 | 206 | 130 | 237 | 4.95e-25 | 102 |
MsaG000851 | AT5G28770.2 | 58.333 | 108 | 43 | 1 | 101 | 206 | 137 | 244 | 5.49e-25 | 102 |
MsaG000851 | AT5G28770.3 | 61.111 | 90 | 35 | 0 | 101 | 190 | 137 | 226 | 7.15e-21 | 89.7 |
MsaG000851 | AT4G02640.4 | 53.097 | 113 | 51 | 1 | 90 | 200 | 188 | 300 | 5.47e-16 | 77.8 |
MsaG000851 | AT4G02640.3 | 53.097 | 113 | 51 | 1 | 90 | 200 | 194 | 306 | 5.50e-16 | 77.8 |
MsaG000851 | AT4G02640.2 | 53.097 | 113 | 51 | 1 | 90 | 200 | 194 | 306 | 6.42e-16 | 77.8 |
MsaG000851 | AT4G02640.1 | 53.097 | 113 | 51 | 1 | 90 | 200 | 188 | 300 | 6.84e-16 | 77.4 |
MsaG000851 | AT3G54620.1 | 51.136 | 88 | 43 | 0 | 113 | 200 | 227 | 314 | 1.77e-13 | 70.5 |
MsaG000851 | AT1G75390.1 | 39.759 | 83 | 50 | 0 | 114 | 196 | 38 | 120 | 5.96e-12 | 63.5 |
MsaG000851 | AT2G18160.1 | 36.190 | 105 | 57 | 1 | 92 | 196 | 16 | 110 | 1.48e-11 | 62.4 |
MsaG000851 | AT3G30530.1 | 39.773 | 88 | 53 | 0 | 102 | 189 | 66 | 153 | 3.13e-11 | 61.2 |
MsaG000851 | AT1G75390.2 | 44.776 | 67 | 37 | 0 | 114 | 180 | 38 | 104 | 8.27e-11 | 58.9 |
Find 61 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTCTTGGGAGTGAGGTTT+TGG | 0.180329 | 1:-11555786 | None:intergenic |
TGTTCAATTGACTCTGATTT+TGG | 0.206784 | 1:-11558804 | None:intergenic |
CATCTGTAAGCTGCTTAAAT+AGG | 0.310185 | 1:-11558261 | None:intergenic |
TTTGGCAGACCTTGAGGTTC+AGG | 0.310946 | 1:+11558079 | MsaT000851.1:CDS |
CTAAGACGCTTCATATCAAC+AGG | 0.337570 | 1:-11556797 | None:intergenic |
TGCAGTGATGGTGGAGTTCT+TGG | 0.341951 | 1:-11555800 | None:intergenic |
TGAGCTCTTTGACTAGCTTA+TGG | 0.345147 | 1:+11559007 | MsaT000851.1:CDS |
AAGAAGAAAACAAGCACATT+TGG | 0.358483 | 1:+11558061 | MsaT000851.1:CDS |
TGTTGTTGTAGTCACTCCTT+TGG | 0.367802 | 1:-11556708 | None:intergenic |
GGTGAAGTTAGCAGAGGATA+TGG | 0.388906 | 1:+11558741 | MsaT000851.1:intron |
AGTATTACCGGTGGCAGAAA+TGG | 0.392731 | 1:-11555842 | None:intergenic |
CAGAATTCAGCTATTGGACT+TGG | 0.407633 | 1:+11558928 | MsaT000851.1:CDS |
AGTGGACAGAATTCAGCTAT+TGG | 0.421178 | 1:+11558922 | MsaT000851.1:CDS |
TTTCCATGGACGGTGATTGT+AGG | 0.427364 | 1:-11558880 | None:intergenic |
CATGGAAACGACGCTTCATA+TGG | 0.432634 | 1:+11558895 | MsaT000851.1:CDS |
CAAACAAGAGTATTATTTGT+TGG | 0.433570 | 1:-11555760 | None:intergenic |
CACTAGTAATCTCCGTTGTA+TGG | 0.434010 | 1:+11558846 | MsaT000851.1:CDS |
TGTTAGCATCGCGAAATTGT+TGG | 0.440152 | 1:-11558288 | None:intergenic |
TTGATATGAAGCGTCTTAGA+AGG | 0.440492 | 1:+11556801 | MsaT000851.1:CDS |
TTAGGTTGAACAGCTGAGGC+TGG | 0.444559 | 1:+11558228 | MsaT000851.1:intron |
CATATGAAGCGTCGTTTCCA+TGG | 0.454343 | 1:-11558894 | None:intergenic |
GACGCTTCATATGGTGTTAG+TGG | 0.460901 | 1:+11558904 | MsaT000851.1:CDS |
AGCAGAGGATATGGTCTCTA+GGG | 0.483549 | 1:+11558750 | MsaT000851.1:CDS |
GCAGTGATGGTGGAGTTCTT+GGG | 0.488823 | 1:-11555799 | None:intergenic |
TGGTGGAGTTCTTGGGAGTG+AGG | 0.489497 | 1:-11555792 | None:intergenic |
AGATTACTAGTGTTGATTTG+TGG | 0.491316 | 1:-11558835 | None:intergenic |
ACTGACCAGATTATGAAAAT+CGG | 0.504341 | 1:-11553285 | None:intergenic |
TAGCAGAGGATATGGTCTCT+AGG | 0.512033 | 1:+11558749 | MsaT000851.1:CDS |
ACATCGCCGACACTGATGAA+TGG | 0.512087 | 1:-11553236 | None:intergenic |
AGAAGCTGGTTGTTAAAAGT+AGG | 0.514450 | 1:-11558781 | None:intergenic |
TGCAGTCATGATTTCAACAA+TGG | 0.523773 | 1:+11558967 | MsaT000851.1:CDS |
ATTATGAAAATCGGCGGTGT+CGG | 0.528802 | 1:-11553276 | None:intergenic |
TGTTGAAGCTTTAAGAGCTA+AGG | 0.529338 | 1:+11558336 | MsaT000851.1:CDS |
AGCTCTTAAAGCTTCAACAT+CGG | 0.530694 | 1:-11558332 | None:intergenic |
GCTTCATCATCTTCATCAGA+TGG | 0.530813 | 1:-11556749 | None:intergenic |
CTCAATAGTTGCAGTGATGG+TGG | 0.531409 | 1:-11555809 | None:intergenic |
ACATGTTGAAAATGAAGTTA+CGG | 0.531605 | 1:-11555731 | None:intergenic |
TTTCTTAGGTTGAACAGCTG+AGG | 0.532387 | 1:+11558224 | MsaT000851.1:intron |
TCGCCTACAATCACCGTCCA+TGG | 0.536280 | 1:+11558877 | MsaT000851.1:CDS |
CAATCATCCATTTCTGCCAC+CGG | 0.538002 | 1:+11555835 | MsaT000851.1:CDS |
TGAAGCGTCGTTTCCATGGA+CGG | 0.541190 | 1:-11558890 | None:intergenic |
AGCATCGCGAAATTGTTGGC+TGG | 0.553901 | 1:-11558284 | None:intergenic |
AGTGTCGGCGATGTTTGCTC+TGG | 0.559900 | 1:+11553245 | MsaT000851.1:CDS |
CTAGGTTTATTAGCTGACAC+TGG | 0.571493 | 1:-11556671 | None:intergenic |
AGCACATTTGGCAGACCTTG+AGG | 0.572432 | 1:+11558073 | MsaT000851.1:CDS |
TCTGATGAAGATGATGAAGC+AGG | 0.584800 | 1:+11556752 | MsaT000851.1:CDS |
GGGTTTGTACTTTGTTCACA+AGG | 0.595616 | 1:-11556776 | None:intergenic |
AATTAATTACCTGAACCTCA+AGG | 0.595756 | 1:-11558088 | None:intergenic |
AGACTCAATAGTTGCAGTGA+TGG | 0.603647 | 1:-11555812 | None:intergenic |
ATGGATCCATTCATCAGTGT+CGG | 0.609480 | 1:+11553230 | MsaT000851.1:CDS |
AGTAGAGAAAATCAAACCAA+AGG | 0.615439 | 1:+11556692 | MsaT000851.1:CDS |
GGAGTGACTACAACAACAAG+TGG | 0.619797 | 1:+11556713 | MsaT000851.1:CDS |
TTACTAGTGTTGATTTGTGG+CGG | 0.621086 | 1:-11558832 | None:intergenic |
GCGAAACATGCGCCATACAA+CGG | 0.641264 | 1:-11558858 | None:intergenic |
AATTTAGGTGAAGTTAGCAG+AGG | 0.643088 | 1:+11558735 | MsaT000851.1:intron |
TTCATCAGATGGATCACGTG+AGG | 0.658342 | 1:-11556738 | None:intergenic |
GACCAGATTATGAAAATCGG+CGG | 0.666849 | 1:-11553282 | None:intergenic |
CTAATCGCGAGTCTGCCAGA+AGG | 0.671078 | 1:+11558033 | MsaT000851.1:CDS |
AGTGTTGATTTGTGGCGGAG+TGG | 0.681459 | 1:-11558827 | None:intergenic |
GCAGAGGATATGGTCTCTAG+GGG | 0.691454 | 1:+11558751 | MsaT000851.1:CDS |
TAAGACGCTTCATATCAACA+GGG | 0.724365 | 1:-11556796 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 11553230 | 11559035 | 11553230 | ID=MsaG000851 |
Chr1 | mRNA | 11553230 | 11559035 | 11553230 | ID=MsaT000851.1;Parent=MsaG000851 |
Chr1 | exon | 11553230 | 11553301 | 11553230 | ID=MsaT000851.1.exon1;Parent=MsaT000851.1 |
Chr1 | CDS | 11553230 | 11553301 | 11553230 | ID=cds.MsaT000851.1;Parent=MsaT000851.1 |
Chr1 | exon | 11555727 | 11555856 | 11555727 | ID=MsaT000851.1.exon2;Parent=MsaT000851.1 |
Chr1 | CDS | 11555727 | 11555856 | 11555727 | ID=cds.MsaT000851.1;Parent=MsaT000851.1 |
Chr1 | exon | 11556663 | 11556822 | 11556663 | ID=MsaT000851.1.exon3;Parent=MsaT000851.1 |
Chr1 | CDS | 11556663 | 11556822 | 11556663 | ID=cds.MsaT000851.1;Parent=MsaT000851.1 |
Chr1 | exon | 11558025 | 11558100 | 11558025 | ID=MsaT000851.1.exon4;Parent=MsaT000851.1 |
Chr1 | CDS | 11558025 | 11558100 | 11558025 | ID=cds.MsaT000851.1;Parent=MsaT000851.1 |
Chr1 | exon | 11558232 | 11558357 | 11558232 | ID=MsaT000851.1.exon5;Parent=MsaT000851.1 |
Chr1 | CDS | 11558232 | 11558357 | 11558232 | ID=cds.MsaT000851.1;Parent=MsaT000851.1 |
Chr1 | exon | 11558742 | 11559035 | 11558742 | ID=MsaT000851.1.exon6;Parent=MsaT000851.1 |
Chr1 | CDS | 11558742 | 11559035 | 11558742 | ID=cds.MsaT000851.1;Parent=MsaT000851.1 |
Gene Sequence |
Protein sequence |