AlfalfaGEDB | MsaG000851

M. sativa ssp. caerulea / MsaG000851

KEGG: -
GO: GO:0001678 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000851	XP_003588595.1	96.154	286	8	2	1	284	54	338	0.0	554

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000851	sp\|Q9FUD3\|BZIP9_ARATH	48.425	254	100	7	39	284	46	276	2.46e-60	196

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000851	tr\|G7I545\|G7I545_MEDTR	96.154	286	8	2	1	284	54	338	0.0	554

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG000851	TF	bZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000851	MtrunA17_Chr1g0147491	96.154	286	8	2	1	284	54	338	0.0	554
MsaG000851	MtrunA17_Chr3g0139301	62.105	285	75	14	10	284	33	294	9.48e-98	289
MsaG000851	MtrunA17_Chr1g0190761	58.065	124	48	2	86	205	177	300	1.41e-27	110
MsaG000851	MtrunA17_Chr7g0274141	52.381	147	54	4	64	205	150	285	2.64e-26	106
MsaG000851	MtrunA17_Chr3g0139571	78.378	74	16	0	116	189	1	74	3.56e-26	98.6
MsaG000851	MtrunA17_Chr3g0144941	41.558	77	45	0	114	190	27	103	8.42e-12	62.0
MsaG000851	MtrunA17_Chr1g0155551	29.747	158	96	2	89	246	3	145	9.10e-12	62.0
MsaG000851	MtrunA17_Chr8g0341311	43.478	92	47	1	98	189	60	146	2.23e-11	61.6
MsaG000851	MtrunA17_Chr6g0456061	40.385	104	56	3	102	204	77	175	2.27e-11	62.0
MsaG000851	MtrunA17_Chr8g0378901	34.884	86	56	0	111	196	29	114	2.71e-11	60.8

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000851	AT5G24800.1	48.425	254	100	7	39	284	46	276	2.50e-61	196
MsaG000851	AT5G28770.1	58.333	108	43	1	101	206	130	237	4.95e-25	102
MsaG000851	AT5G28770.2	58.333	108	43	1	101	206	137	244	5.49e-25	102
MsaG000851	AT5G28770.3	61.111	90	35	0	101	190	137	226	7.15e-21	89.7
MsaG000851	AT4G02640.4	53.097	113	51	1	90	200	188	300	5.47e-16	77.8
MsaG000851	AT4G02640.3	53.097	113	51	1	90	200	194	306	5.50e-16	77.8
MsaG000851	AT4G02640.2	53.097	113	51	1	90	200	194	306	6.42e-16	77.8
MsaG000851	AT4G02640.1	53.097	113	51	1	90	200	188	300	6.84e-16	77.4
MsaG000851	AT3G54620.1	51.136	88	43	0	113	200	227	314	1.77e-13	70.5
MsaG000851	AT1G75390.1	39.759	83	50	0	114	196	38	120	5.96e-12	63.5

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 61 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGAAAACAAGCACATT+TGG	0.358483	1:+11558061	MsaT000851.1:CDS
AATTAATTACCTGAACCTCA+AGG	0.595756	1:-11558088	None:intergenic
AATTTAGGTGAAGTTAGCAG+AGG	0.643088	1:+11558735	MsaT000851.1:intron
ACATCGCCGACACTGATGAA+TGG	0.512087	1:-11553236	None:intergenic
ACATGTTGAAAATGAAGTTA+CGG	0.531605	1:-11555731	None:intergenic
ACTGACCAGATTATGAAAAT+CGG	0.504341	1:-11553285	None:intergenic
AGAAGCTGGTTGTTAAAAGT+AGG	0.514450	1:-11558781	None:intergenic
AGACTCAATAGTTGCAGTGA+TGG	0.603647	1:-11555812	None:intergenic
AGATTACTAGTGTTGATTTG+TGG	0.491316	1:-11558835	None:intergenic
AGCACATTTGGCAGACCTTG+AGG	0.572432	1:+11558073	MsaT000851.1:CDS

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	11553230	11559035	11553230	ID=MsaG000851
Chr1	mRNA	11553230	11559035	11553230	ID=MsaT000851.1;Parent=MsaG000851
Chr1	exon	11553230	11553301	11553230	ID=MsaT000851.1.exon1;Parent=MsaT000851.1
Chr1	CDS	11553230	11553301	11553230	ID=cds.MsaT000851.1;Parent=MsaT000851.1
Chr1	exon	11555727	11555856	11555727	ID=MsaT000851.1.exon2;Parent=MsaT000851.1
Chr1	CDS	11555727	11555856	11555727	ID=cds.MsaT000851.1;Parent=MsaT000851.1
Chr1	exon	11556663	11556822	11556663	ID=MsaT000851.1.exon3;Parent=MsaT000851.1
Chr1	CDS	11556663	11556822	11556663	ID=cds.MsaT000851.1;Parent=MsaT000851.1
Chr1	exon	11558025	11558100	11558025	ID=MsaT000851.1.exon4;Parent=MsaT000851.1
Chr1	CDS	11558025	11558100	11558025	ID=cds.MsaT000851.1;Parent=MsaT000851.1
Chr1	exon	11558232	11558357	11558232	ID=MsaT000851.1.exon5;Parent=MsaT000851.1
Chr1	CDS	11558232	11558357	11558232	ID=cds.MsaT000851.1;Parent=MsaT000851.1
Chr1	exon	11558742	11559035	11558742	ID=MsaT000851.1.exon6;Parent=MsaT000851.1
Chr1	CDS	11558742	11559035	11558742	ID=cds.MsaT000851.1;Parent=MsaT000851.1

Gene Sequence

>MsaT000851.1

ATGGATCCATTCATCAGTGTCGGCGATGTTTGCTCTGGTAACATCGCCGACACCGCCGATTTTCATAATCTGGATGCCGTAACTTCATTTTCAACATGTGGTGAACCAACAAATAATACTCTTGTTTGCTCCCAAAACCTCACTCCCAAGAACTCCACCATCACTGCAACTATTGAGTCTCAATCATCCATTTCTGCCACCGTTACAAGTCCAGTGTCAGCTAATAAACCTAGTAGAGAAAATCAAACCAAAGGAGTGACTACAACAACAAGTGGTTCCTCACGTGATCCATCTGATGAAGATGATGAAGCAGGTCCTTGTGAACAAAGTACAAACCCTGTTGATATGAAGCGTCTTAGAAGAAAGGTTTCTAATCGCGAGTCTGCCAGAAGGTCCAGAAGAAGAAAACAAGCACATTTGGCAGACCTTGAGGTTCAGGTTGAACAGCTGAGGCTGGAAAATGCAAGCCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGCGATGCTAACACTAACAACCGAGTGCTAAAATCCGATGTTGAAGCTTTAAGAGCTAAGGTGAAGTTAGCAGAGGATATGGTCTCTAGGGGTACTTTACCTACTTTTAACAACCAGCTTCTCCAAAATCAGAGTCAATTGAACACCACTCCGCCACAAATCAACACTAGTAATCTCCGTTGTATGGCGCATGTTTCGCCTACAATCACCGTCCATGGAAACGACGCTTCATATGGTGTTAGTGGACAGAATTCAGCTATTGGACTTGGAGATTTTGATATATCTTGCAGTCATGATTTCAACAATGGAGTTAATAGTGATGCTGTGAGCTCTTTGACTAGCTTATGGTCATAA

Protein sequence

>MsaT000851.1

MDPFISVGDVCSGNIADTADFHNLDAVTSFSTCGEPTNNTLVCSQNLTPKNSTITATIESQSSISATVTSPVSANKPSRENQTKGVTTTTSGSSRDPSDEDDEAGPCEQSTNPVDMKRLRRKVSNRESARRSRRRKQAHLADLEVQVEQLRLENASLFKQLTDASQQFRDANTNNRVLKSDVEALRAKVKLAEDMVSRGTLPTFNNQLLQNQSQLNTTPPQINTSNLRCMAHVSPTITVHGNDASYGVSGQNSAIGLGDFDISCSHDFNNGVNSDAVSSLTSLWS*