AlfalfaGEDB | MsaG000889

M. sativa ssp. caerulea / MsaG000889

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF06203.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000889	XP_003588527.1	97.976	247	5	0	3	249	36	282	3.41e-177	498

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000889	tr\|G7I4B0\|G7I4B0_MEDTR	97.976	247	5	0	3	249	36	282	1.63e-177	498

TFs/TRs:

Gene ID	Type	Classification
MsaG000889	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000889	MsaG002099	0.826031	6.030170e-54	1.560824e-51
MsaG000889	MsaG002601	0.842422	4.857476e-58	2.047548e-55
MsaG000889	MsaG005809	0.802538	8.987461e-49	1.287192e-46
MsaG000889	MsaG005981	0.815480	1.566677e-51	3.065465e-49
MsaG000889	MsaG009725	0.823915	1.894685e-53	4.627096e-51
MsaG000889	MsaG010266	0.805169	2.569290e-49	3.910593e-47
MsaG000889	MsaG010473	0.805746	1.946789e-49	3.003132e-47
MsaG000889	MsaG011348	0.801058	1.803665e-48	2.497486e-46
MsaG000889	MsaG016270	0.827758	2.341678e-54	6.360338e-52
MsaG000889	MsaG016272	0.804058	4.368662e-49	6.480350e-47
MsaG000889	MsaG017193	0.818034	4.216565e-52	8.808674e-50
MsaG000889	MsaG017470	0.828968	1.199631e-54	3.370763e-52
MsaG000889	MsaG018065	0.815722	1.385049e-51	2.726793e-49
MsaG000889	MsaG023677	0.807961	6.657125e-50	1.082338e-47
MsaG000889	MsaG023752	0.838195	6.105595e-57	2.252790e-54
MsaG000889	MsaG025266	0.834480	5.321109e-56	1.754912e-53
MsaG000889	MsaG028812	0.814588	2.466691e-51	4.718852e-49
MsaG000889	MsaG035931	0.802210	1.049397e-48	1.491639e-46
MsaG000889	MsaG036297	0.820957	9.149874e-53	2.064058e-50
MsaG000889	MsaG036303	0.815368	1.659088e-51	3.237180e-49
MsaG000889	MsaG041905	0.826736	4.103511e-54	1.083141e-51
MsaG000889	MsaG044161	0.836757	1.421050e-56	5.017686e-54
MsaG000889	MsaG045108	0.805783	1.912380e-49	2.952634e-47
MsaG000889	MsaG014455	0.802225	1.041838e-48	1.481419e-46
MsaG000889	MsaG032021	0.851274	1.886782e-60	1.068484e-57
MsaG000889	MsaG031311	0.806177	1.582041e-49	2.465421e-47
MsaG000889	MsaG043461	0.969921	3.185725e-130	3.360742e-124

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000889	MtrunA17_Chr1g0147111	97.976	247	5	0	3	249	36	282	0.0	498
MsaG000889	MtrunA17_Chr3g0126721	73.878	245	56	4	3	245	38	276	8.24e-117	335
MsaG000889	MtrunA17_Chr8g0387241	48.235	85	42	1	161	243	185	269	2.58e-21	90.9
MsaG000889	MtrunA17_Chr5g0397361	45.882	85	42	1	161	245	139	219	1.91e-17	79.0
MsaG000889	MtrunA17_Chr1g0168401	35.172	145	76	4	117	244	221	364	4.36e-17	79.7
MsaG000889	MtrunA17_Chr1g0186171	36.296	135	69	4	126	244	228	361	1.19e-16	78.6
MsaG000889	MtrunA17_Chr2g0327621	33.813	139	76	4	121	247	69	203	1.21e-16	77.0
MsaG000889	MtrunA17_Chr4g0030421	42.857	84	44	2	161	244	1	80	1.46e-16	73.9
MsaG000889	MtrunA17_Chr2g0311591	53.061	49	23	0	195	243	166	214	9.00e-12	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000889	AT5G53420.1	52.846	246	95	7	1	243	35	262	2.46e-78	237
MsaG000889	AT4G27900.1	51.575	254	91	6	4	244	25	259	1.52e-75	230
MsaG000889	AT4G27900.2	51.575	254	91	6	4	244	25	259	1.52e-75	230
MsaG000889	AT5G53420.2	55.224	201	69	7	46	243	1	183	2.57e-64	199
MsaG000889	AT5G53420.5	55.224	201	69	7	46	243	1	183	2.57e-64	199
MsaG000889	AT5G53420.4	55.224	201	69	7	46	243	1	183	2.57e-64	199
MsaG000889	AT5G53420.3	45.763	177	82	6	1	175	35	199	9.28e-40	137
MsaG000889	AT5G41380.1	46.316	95	45	2	156	244	166	260	5.06e-20	87.4
MsaG000889	AT1G63820.1	41.584	101	40	2	161	244	139	237	5.81e-19	84.3
MsaG000889	AT2G33350.2	39.831	118	47	3	151	244	238	355	3.92e-17	80.5
MsaG000889	AT2G33350.4	39.831	118	47	3	151	244	227	344	5.82e-17	79.7
MsaG000889	AT2G33350.5	39.831	118	47	3	151	244	247	364	6.21e-17	79.7
MsaG000889	AT1G04500.4	64.000	50	18	0	195	244	284	333	1.17e-16	79.0
MsaG000889	AT1G04500.1	64.000	50	18	0	195	244	284	333	1.17e-16	79.0
MsaG000889	AT1G04500.3	64.000	50	18	0	195	244	275	324	1.17e-16	79.0
MsaG000889	AT2G33350.1	64.000	50	18	0	195	244	307	356	4.10e-16	77.4
MsaG000889	AT5G59990.1	59.091	44	18	0	206	249	170	213	8.58e-12	63.5

Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTCTTCTTATTCCTATATC+TGG	0.246824	1:+12007503	None:intergenic
TTCAGGAAATTTGAGTTCAA+TGG	0.350069	1:-12008146	MsaT000889.1:CDS
GCAAATCTTCCACGGATTCT+TGG	0.350555	1:+12006752	None:intergenic
GATAATAGTACATCAGGAAT+TGG	0.361584	1:+12008181	None:intergenic
CCTGCTTTCCTTGATTTCCC+TGG	0.370726	1:-12008097	MsaT000889.1:CDS
CCGTGGAAGATTTGCGAAAA+CGG	0.381688	1:-12006744	MsaT000889.1:CDS
AAGAAGACAAGGAGAAACTT+TGG	0.387483	1:-12007489	MsaT000889.1:CDS
CATGGTTTCAGTATGCTTGT+AGG	0.397320	1:-12006796	MsaT000889.1:intron
AGGAAAGCAGGCTTCATTGC+AGG	0.402149	1:+12008109	None:intergenic
ACCGCGTTAAAATCAATTCC+AGG	0.422111	1:+12008079	None:intergenic
GAAATTTGAGTTCAATGGAT+TGG	0.431971	1:-12008141	MsaT000889.1:CDS
TTATCAAAGAGTGTCAGTTC+AGG	0.440427	1:-12008163	MsaT000889.1:CDS
GAGCAGGAATCTTGATTTCA+AGG	0.444374	1:+12008239	None:intergenic
CTCTTTGATAATAGTACATC+AGG	0.447091	1:+12008175	None:intergenic
AGAAGACAAGGAGAAACTTT+GGG	0.461172	1:-12007488	MsaT000889.1:CDS
GTGCAGTTGCTGAGAAGAAA+AGG	0.470162	1:+12007552	None:intergenic
AATCAATTCCAGGGAAATCA+AGG	0.470610	1:+12008089	None:intergenic
TGGGGAAGACATGTCGTCGC+AGG	0.471749	1:-12008383	MsaT000889.1:CDS
ATTTAGTGAAGGAGATATAA+AGG	0.474162	1:-12008038	MsaT000889.1:intron
CGGTTCTTCAATAATCGTCT+CGG	0.477444	1:+12008453	None:intergenic
CGAGACGATTATTGAAGAAC+CGG	0.482715	1:-12008452	MsaT000889.1:CDS
TGGCTGCTTGCATTTGATCA+AGG	0.489809	1:+12008422	None:intergenic
GTCGCAGGGTCTAAAATCTT+CGG	0.499847	1:-12008368	MsaT000889.1:CDS
TTGTTTGTATAACAGACTCT+TGG	0.509295	1:-12007615	MsaT000889.1:intron
AGAATTTGATTTATTTGTAG+AGG	0.514069	1:-12008494	MsaT000889.1:CDS
TTCTCGTCAATGTTCAGAGC+AGG	0.527138	1:+12008223	None:intergenic
ATTTGATCAAGGTCCATCTC+CGG	0.536269	1:+12008433	None:intergenic
CCAGGGAAATCAAGGAAAGC+AGG	0.538494	1:+12008097	None:intergenic
GAATTTGATTTATTTGTAGA+GGG	0.539422	1:-12008493	MsaT000889.1:CDS
AGTTCAATGGATTGGATGCA+TGG	0.542974	1:-12008133	MsaT000889.1:CDS
ATTTCAAGGATTTCAGAAAG+AGG	0.543254	1:+12008253	None:intergenic
GCAGCCATGTCAATGATGTC+TGG	0.545025	1:-12008406	MsaT000889.1:CDS
GATTATTGAAGAACCGGAGA+TGG	0.549985	1:-12008446	MsaT000889.1:CDS
GGTTCTTCAATAATCGTCTC+GGG	0.551243	1:+12008454	None:intergenic
CCGCGTTAAAATCAATTCCA+GGG	0.559154	1:+12008080	None:intergenic
AAGGCCTCTCTAGAGTGGAT+TGG	0.563933	1:+12007571	None:intergenic
AAACTTTGGGAGGAAAATCA+AGG	0.564099	1:-12007475	MsaT000889.1:intron
GGGGAAGACATGTCGTCGCA+GGG	0.576526	1:-12008382	MsaT000889.1:CDS
AAGAAAAGGCCTCTCTAGAG+TGG	0.578670	1:+12007566	None:intergenic
CGGAGGAGTTAGATATCAAG+AGG	0.594972	1:-12006724	MsaT000889.1:CDS
CCATGTCAATGATGTCTGGT+GGG	0.605089	1:-12008402	MsaT000889.1:CDS
GTTTCAGTATGCTTGTAGGA+AGG	0.605930	1:-12006792	MsaT000889.1:intron
GTATAACAGACTCTTGGCAA+TGG	0.606169	1:-12007609	MsaT000889.1:intron
GACAGTCAACCAAGAATCCG+TGG	0.616160	1:-12006761	MsaT000889.1:CDS
GGCAATGGTAACATGAGTGT+TGG	0.622717	1:-12007594	MsaT000889.1:CDS
CCCACCAGACATCATTGACA+TGG	0.626711	1:+12008402	None:intergenic
GCCATGTCAATGATGTCTGG+TGG	0.631276	1:-12008403	MsaT000889.1:CDS
GATATAGGAATAAGAAGACA+AGG	0.632233	1:-12007500	MsaT000889.1:CDS
ATGCGAAGAGCATTTAGTGA+AGG	0.636958	1:-12008049	MsaT000889.1:CDS
AGAAAGAGGTGATTCTATAG+CGG	0.645696	1:+12008267	None:intergenic
TTGGCCAATCCACTCTAGAG+AGG	0.651640	1:-12007575	MsaT000889.1:CDS
TGGAAGATTTGCGAAAACGG+AGG	0.654676	1:-12006741	MsaT000889.1:CDS
ACATCGCATATGATTGAACA+AGG	0.660417	1:+12008518	None:intergenic
CATGTCAATGATGTCTGGTG+GGG	0.675165	1:-12008401	MsaT000889.1:CDS
AGACAAGGAGAAACTTTGGG+AGG	0.688525	1:-12007485	MsaT000889.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	12006718	12008551	12006718	ID=MsaG000889
Chr1	mRNA	12006718	12008551	12006718	ID=MsaT000889.1;Parent=MsaG000889
Chr1	exon	12006718	12006807	12006718	ID=MsaT000889.1.exon3;Parent=MsaT000889.1
Chr1	CDS	12006718	12006807	12006718	ID=cds.MsaT000889.1;Parent=MsaT000889.1
Chr1	exon	12007476	12007622	12007476	ID=MsaT000889.1.exon2;Parent=MsaT000889.1
Chr1	CDS	12007476	12007622	12007476	ID=cds.MsaT000889.1;Parent=MsaT000889.1
Chr1	exon	12008039	12008551	12008039	ID=MsaT000889.1.exon1;Parent=MsaT000889.1
Chr1	CDS	12008039	12008551	12008039	ID=cds.MsaT000889.1;Parent=MsaT000889.1

Gene Sequence

>MsaT000889.1

ATGCAGAGTGACCTTGTTCAATCATATGCGATGTCAGAATTTGATTTATTTGTAGAGGGAGATCTGTTCAAAGCACCCGAGACGATTATTGAAGAACCGGAGATGGACCTTGATCAAATGCAAGCAGCCATGTCAATGATGTCTGGTGGGGAAGACATGTCGTCGCAGGGTCTAAAATCTTCGGATATTGATGATGTGCTTCAAAGCGAACAACTTTTGAGTGAGGTCTACTATGATTGCAAAAAAGATCTCTTAGAAAAGGCCGCTATAGAATCACCTCTTTCTGAAATCCTTGAAATCAAGATTCCTGCTCTGAACATTGACGAGAATTCGATTCTAGAAAACAAACCAATTCCTGATGTACTATTATCAAAGAGTGTCAGTTCAGGAAATTTGAGTTCAATGGATTGGATGCATGGTCCTGCAATGAAGCCTGCTTTCCTTGATTTCCCTGGAATTGATTTTAACGCGGTTTATGGCATGCGAAGAGCATTTAGTGAAGGAGATATAAAGACTCTTGGCAATGGTAACATGAGTGTTGGCCAATCCACTCTAGAGAGGCCTTTTCTTCTCAGCAACTGCACGAGTGAGCAACGTCAAGAAAAACTCTCCAGATATAGGAATAAGAAGACAAGGAGAAACTTTGGGAGGAAAATCAAGTATGCTTGTAGGAAGGCGCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCGAAAACGGAGGAGTTAGATATCAAGAGGCAATGA

Protein sequence

>MsaT000889.1

MQSDLVQSYAMSEFDLFVEGDLFKAPETIIEEPEMDLDQMQAAMSMMSGGEDMSSQGLKSSDIDDVLQSEQLLSEVYYDCKKDLLEKAAIESPLSEILEIKIPALNIDENSILENKPIPDVLLSKSVSSGNLSSMDWMHGPAMKPAFLDFPGIDFNAVYGMRRAFSEGDIKTLGNGNMSVGQSTLERPFLLSNCTSEQRQEKLSRYRNKKTRRNFGRKIKYACRKALADSQPRIRGRFAKTEELDIKRQ*