AlfalfaGEDB | MsaG000924

M. sativa ssp. caerulea / MsaG000924

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000924	XP_003588480.1	86.885	61	8	0	361	421	186	246	3.40e-24	114
MsaG000924	XP_003588480.1	96.923	325	9	1	1	324	1	325	0.0	649

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000924	sp\|Q9FNE9\|ATXR6_ARATH	71.096	301	84	3	26	324	33	332	9.69e-151	434
MsaG000924	sp\|Q9FNE9\|ATXR6_ARATH	70.492	61	18	0	361	421	192	252	7.88e-20	93.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000924	tr\|G7I3E6\|G7I3E6_MEDTR	86.885	61	8	0	361	421	186	246	1.62e-24	114
MsaG000924	tr\|G7I3E6\|G7I3E6_MEDTR	96.923	325	9	1	1	324	1	325	0.0	649

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000924	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000924	MtrunA17_Chr1g0146731	96.923	325	9	1	1	324	1	325	0.0	649
MsaG000924	MtrunA17_Chr1g0146731	86.885	61	8	0	361	421	186	246	3.13e-28	114
MsaG000924	MtrunA17_Chr1g0146761	67.278	327	70	7	1	324	51	343	1.60e-143	413
MsaG000924	MtrunA17_Chr1g0146761	70.492	61	18	0	361	421	203	263	1.70e-21	95.1
MsaG000924	MtrunA17_Chr3g0129881	59.344	305	121	2	22	324	70	373	1.55e-120	355
MsaG000924	MtrunA17_Chr3g0129881	52.542	59	28	0	362	420	235	293	2.41e-13	71.2
MsaG000924	MtrunA17_Chr1g0146751	82.031	128	23	0	184	311	69	196	1.68e-71	223
MsaG000924	MtrunA17_Chr1g0146751	75.000	64	16	0	358	421	67	130	1.91e-24	99.8
MsaG000924	MtrunA17_Chr1g0146741	68.902	164	26	2	116	264	27	180	7.08e-67	211
MsaG000924	MtrunA17_Chr1g0146741	61.765	68	16	1	354	421	104	161	1.26e-18	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000924	AT5G24330.1	71.096	301	84	3	26	324	33	332	9.85e-152	434
MsaG000924	AT5G24330.1	70.492	61	18	0	361	421	192	252	8.01e-21	93.6
MsaG000924	AT5G09790.2	58.278	302	121	2	25	324	64	362	4.09e-124	365
MsaG000924	AT5G09790.2	65.574	61	21	0	361	421	223	283	1.09e-18	87.8
MsaG000924	AT5G09790.1	58.472	301	121	2	25	324	64	361	1.41e-123	363
MsaG000924	AT5G09790.1	65.574	61	21	0	361	421	222	282	1.08e-18	87.8

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Find 88 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTGCAGAAGTATGA+TGG	0.488621	1:-12512026	MsaT000924.1:CDS
AAACATTACCGCAGATATGG+AGG	0.600334	1:+12513262	None:intergenic
AAAGCGGAGTAGTAGTTTGG+TGG	0.462327	1:-12515967	MsaT000924.1:CDS
AACAAACATTACCGCAGATA+TGG	0.381910	1:+12513259	None:intergenic
AAGAATCGGGAATATGATGA+TGG	0.544853	1:-12514687	MsaT000924.1:CDS
AAGAGGATTTAGGTACAGAA+GGG	0.621884	1:+12516929	None:intergenic
AATATAGCACGTTTCATTAA+TGG	0.211173	1:-12514591	MsaT000924.1:CDS
AATGAGCTTACGTACATGCC+TGG	0.527386	1:-12515828	MsaT000924.1:CDS
AATTCTCCTGTTCTTGAACG+TGG	0.577379	1:-12515786	MsaT000924.1:CDS
ACAAAGAAGCAACTTAGTTG+GGG	0.616689	1:+12516999	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	12511811	12517127	12511811	ID=MsaG000924
Chr1	mRNA	12511811	12517127	12511811	ID=MsaT000924.1;Parent=MsaG000924
Chr1	exon	12511811	12511898	12511811	ID=MsaT000924.1.exon9;Parent=MsaT000924.1
Chr1	CDS	12511811	12511898	12511811	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12511977	12512077	12511977	ID=MsaT000924.1.exon8;Parent=MsaT000924.1
Chr1	CDS	12511977	12512077	12511977	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12513271	12513382	12513271	ID=MsaT000924.1.exon7;Parent=MsaT000924.1
Chr1	CDS	12513271	12513382	12513271	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12514000	12514101	12514000	ID=MsaT000924.1.exon6;Parent=MsaT000924.1
Chr1	CDS	12514000	12514101	12514000	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12514573	12514785	12514573	ID=MsaT000924.1.exon5;Parent=MsaT000924.1
Chr1	CDS	12514573	12514785	12514573	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12514871	12514971	12514871	ID=MsaT000924.1.exon4;Parent=MsaT000924.1
Chr1	CDS	12514871	12514971	12514871	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12515776	12516005	12515776	ID=MsaT000924.1.exon3;Parent=MsaT000924.1
Chr1	CDS	12515776	12516005	12515776	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12516545	12516625	12516545	ID=MsaT000924.1.exon2;Parent=MsaT000924.1
Chr1	CDS	12516545	12516625	12516545	ID=cds.MsaT000924.1;Parent=MsaT000924.1
Chr1	exon	12516887	12517127	12516887	ID=MsaT000924.1.exon1;Parent=MsaT000924.1
Chr1	CDS	12516887	12517127	12516887	ID=cds.MsaT000924.1;Parent=MsaT000924.1

Gene Sequence

>MsaT000924.1

ATGGCTTCACCACTTCGCCGAAGAAGAATTCCAGCTCCCAAAAAACAATCCACAACCTTCAACGATGATGACGACGTCGTTTGCCAGAAATGCAACTCCGGCAAATCCCCAACTAAGTTGCTTCTTTGTGACAATTGCGACAACGGCTACCATCTCTTCTGCCTCACACCTATCCTCCCTTCTGTACCTAAATCCTCTTGGTTTTGCCCTTCCTGCTCTCACAACCCCAAAATCCCCAAATCTTTTCCTCTTGTACAAACCAAAATTATTGATTTCTTCAAGATTCAAAGATCCGTTGATGCATCTAAGATTCTGAATCATGATTCAAAGAAGAAGAGAAAGCGGAGTAGTAGTTTGGTGGTTTCAAAAAAGAAAAGGAAGTTGTTGGTATTTGTGCCAAATGATGATTTGAAGAGGAGATTAGAACAGATGGCGTCGTTGGCAACCGCGTTGACTGCTACTAAAACGGAGTTCAGTAATGAGCTTACGTACATGCCTGGAATGGCGCCAAGGGATGCTAATTCTCCTGTTCTTGAACGTGGAGGAATGCAGGTCTTATCAAAAGAAGACACCGAGACTCTTAACTTGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTATGATCCTGTAGAAGGGTTCACTGTTGAAGCAGACAAGTCCATAAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGACTTTTTGAAGAATCGGGAATATGATGATGGAGATAGCATTATGACACTTCTTTCTGCTTCTAATCCTTCACAGTCACTGGTCATCTGCCCAGATAAACGTAGCAATATAGCACGTTTCATTAATGGAATCAACAATCACACACCTGAAGGAAAAAAGAAGCAGAACCTGAAATGCGTGAGATATAATGTTGATGGTGAATGTCGAGTTCTTTTAATTGCAAATAGAGATATAGCAAAGGGAGAAAGAGTTGAAGTTGCTCCAATGCAATGTGTGATTGCATCCATATCTTGTACTAGGGTGTTCAACCGCCTTCTAAGTGTTAGACTCTGCCCTGGTTGGTGTTCCTCCATATCTGCGGTCTTATCGAAAGAAGACACCGAGACTCTAAACATGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTTTGATCCTGTAGAAGGGTTCACTGTAGAAGCAAATAAATCCATAAAAGAGTCGACCATAACAACAGAATATGTTGTAGATGTAGACTTTTTAAAGAATCCGTAA

Protein sequence

>MsaT000924.1

MASPLRRRRIPAPKKQSTTFNDDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPKIPKSFPLVQTKIIDFFKIQRSVDASKILNHDSKKKRKRSSSLVVSKKKRKLLVFVPNDDLKRRLEQMASLATALTATKTEFSNELTYMPGMAPRDANSPVLERGGMQVLSKEDTETLNLCRSMMERGECPPLMVVYDPVEGFTVEADKSIKDLTIITEYVGDVDFLKNREYDDGDSIMTLLSASNPSQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDGECRVLLIANRDIAKGERVEVAPMQCVIASISCTRVFNRLLSVRLCPGWCSSISAVLSKEDTETLNMCRSMMERGECPPLMVVFDPVEGFTVEANKSIKESTITTEYVVDVDFLKNP*