AlfalfaGEDB | MsaG000960

M. sativa ssp. caerulea / MsaG000960

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905177 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	XP_003588383.1	89.398	349	26	4	1	343	1	344	0.0	601

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	sp\|P69781\|GAT12_ARATH	55.598	259	98	7	102	343	73	331	1.23e-82	256

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	tr\|G7IB47\|G7IB47_MEDTR	89.398	349	26	4	1	343	1	344	0.0	601

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TFs/TRs:

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Gene ID	Type	Classification
MsaG000960	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000237	MsaG000960	0.806117	1.628536e-49	2.534240e-47
MsaG000960	MsaG033433	0.824415	1.447470e-53	3.583393e-51
MsaG000960	MsaG031379	0.834426	5.487963e-56	1.807074e-53
MsaG000960	MsaG032668	0.810831	1.623399e-50	2.829064e-48
MsaG001930	MsaG000960	0.834716	4.643884e-56	1.542444e-53
MsaG003174	MsaG000960	0.803803	4.933871e-49	7.275223e-47
MsaG003188	MsaG000960	0.805506	2.185169e-49	3.351910e-47
MsaG004140	MsaG000960	0.807846	7.040836e-50	1.141582e-47
MsaG005406	MsaG000960	0.817385	5.897417e-52	1.211588e-49
MsaG005702	MsaG000960	0.822123	4.936441e-53	1.148554e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	MtrunA17_Chr1g0146231	89.398	349	26	4	1	343	1	344	0.0	601
MsaG000960	MtrunA17_Chr3g0140331	51.488	336	113	9	19	343	68	364	5.05e-93	281
MsaG000960	MtrunA17_Chr8g0340401	43.567	342	138	13	23	343	35	342	1.47e-69	221
MsaG000960	MtrunA17_Chr8g0372291	45.729	199	90	5	105	303	108	288	1.48e-43	152
MsaG000960	MtrunA17_Chr6g0461591	38.696	230	106	7	104	299	30	258	1.01e-39	140
MsaG000960	MtrunA17_Chr4g0035891	32.390	318	143	10	5	302	15	280	5.91e-38	137
MsaG000960	MtrunA17_Chr5g0404981	43.498	223	92	7	105	303	158	370	1.55e-36	135
MsaG000960	MtrunA17_Chr3g0145121	36.765	204	111	3	101	303	99	285	2.34e-35	130
MsaG000960	MtrunA17_Chr1g0169431	78.873	71	15	0	232	302	171	241	7.32e-35	127
MsaG000960	MtrunA17_Chr1g0199671	33.438	317	146	11	27	297	9	306	7.62e-35	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	AT5G25830.1	55.598	259	98	7	102	343	73	331	1.25e-83	256
MsaG000960	AT4G32890.1	42.899	338	133	10	21	343	16	308	2.88e-74	232
MsaG000960	AT2G45050.1	41.631	233	79	7	98	313	65	257	2.12e-44	153
MsaG000960	AT3G60530.1	45.411	207	67	7	98	301	63	226	1.04e-43	151
MsaG000960	AT5G66320.2	37.455	275	115	8	69	315	86	331	1.69e-37	137
MsaG000960	AT5G66320.1	37.455	275	115	8	69	315	86	331	1.69e-37	137
MsaG000960	AT4G34680.1	37.850	214	87	5	91	302	80	249	1.94e-35	130
MsaG000960	AT4G34680.2	37.850	214	87	5	91	302	80	249	1.94e-35	130
MsaG000960	AT4G36240.1	41.176	204	69	6	106	300	70	231	2.90e-34	126
MsaG000960	AT3G24050.1	74.286	70	18	0	232	301	193	262	2.59e-33	124

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Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTATGCAACGCTTG+TGG	0.628460	1:-13014293	MsaT000960.1:CDS
AAAACGATTCCTCATCAATA+TGG	0.237248	1:+13014711	None:intergenic
AAAACGTCCTTGTTGAATAT+AGG	0.436633	1:+13014590	None:intergenic
AAACAGTCCTATATTCAACA+AGG	0.731972	1:-13014597	MsaT000960.1:CDS
AAACGATTCCTCATCAATAT+GGG	0.498163	1:+13014712	None:intergenic
AAAGACTGCTCCAAGAAGAA+AGG	0.555772	1:-13014408	MsaT000960.1:CDS
AACAGTGACGGTAGGTAAGG+TGG	0.543787	1:+13014445	None:intergenic
AACGACATTAGGGTCGCACC+CGG	0.603894	1:+13015300	None:intergenic
AACGCTATTGACCACGGTAA+CGG	0.557909	1:+13015339	None:intergenic
AAGACACCACAATGGCGAAC+CGG	0.386976	1:-13014329	MsaT000960.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	13014043	13015539	13014043	ID=MsaG000960
Chr1	mRNA	13014043	13015539	13014043	ID=MsaT000960.1;Parent=MsaG000960
Chr1	exon	13014043	13014765	13014043	ID=MsaT000960.1.exon2;Parent=MsaT000960.1
Chr1	CDS	13014043	13014765	13014043	ID=cds.MsaT000960.1;Parent=MsaT000960.1
Chr1	exon	13015231	13015539	13015231	ID=MsaT000960.1.exon1;Parent=MsaT000960.1
Chr1	CDS	13015231	13015539	13015231	ID=cds.MsaT000960.1;Parent=MsaT000960.1

Gene Sequence

>MsaT000960.1

ATGGAAGGCACAACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCAGCCACAATCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGTATCGAATTTTTACGGACCATTTCTCGAGAGACCTGTGTGTTCCGGTATATTATATGTGAGGATGACTTAGCGGCCCTGGACTGGATTTCCCATATTGATGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCGGGCATGAAGGTGCGAAACCAGGATGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGACGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTCCTTATTCCCACCCCCACCTTACCTACCGTCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGTCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCTAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACCATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG

Protein sequence

>MsaT000960.1

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATINSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGIEFLRTISRETCVFRYIICEDDLAALDWISHIDEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKDVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPTLPTVTVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNHDDYLIHQHMGPDFRQMM*