AlfalfaGEDB | MsaG000960

M. sativa ssp. caerulea / MsaG000960

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905177 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	XP_003588383.1	89.398	349	26	4	1	343	1	344	0.0	601

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	sp\|P69781\|GAT12_ARATH	55.598	259	98	7	102	343	73	331	1.23e-82	256

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	tr\|G7IB47\|G7IB47_MEDTR	89.398	349	26	4	1	343	1	344	0.0	601

TFs/TRs:

Gene ID	Type	Classification
MsaG000960	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000237	MsaG000960	0.806117	1.628536e-49	2.534240e-47
MsaG001930	MsaG000960	0.834716	4.643884e-56	1.542444e-53
MsaG003174	MsaG000960	0.803803	4.933871e-49	7.275223e-47
MsaG003188	MsaG000960	0.805506	2.185169e-49	3.351910e-47
MsaG004140	MsaG000960	0.807846	7.040836e-50	1.141582e-47
MsaG005406	MsaG000960	0.817385	5.897417e-52	1.211588e-49
MsaG005702	MsaG000960	0.822123	4.936441e-53	1.148554e-50
MsaG006111	MsaG000960	0.801582	1.410690e-48	1.976689e-46
MsaG006124	MsaG000960	0.801889	1.220540e-48	1.722344e-46
MsaG006323	MsaG000960	0.827877	2.193315e-54	5.977231e-52
MsaG007432	MsaG000960	0.800201	2.692363e-48	3.656627e-46
MsaG007565	MsaG000960	0.800091	2.833809e-48	3.839270e-46
MsaG009174	MsaG000960	0.814057	3.226945e-51	6.091752e-49
MsaG009366	MsaG000960	0.801014	1.840738e-48	2.546400e-46
MsaG009786	MsaG000960	0.855461	1.202569e-61	7.899938e-59
MsaG010365	MsaG000960	0.848912	8.591150e-60	4.486638e-57
MsaG011298	MsaG000960	0.812189	8.255686e-51	1.487429e-48
MsaG044622	MsaG000960	0.817279	6.227459e-52	1.275965e-49
MsaG045251	MsaG000960	0.848063	1.471510e-59	7.468174e-57
MsaG045310	MsaG000960	0.803845	4.835857e-49	7.137602e-47
MsaG045262	MsaG000960	0.819430	2.039326e-52	4.418316e-50
MsaG045392	MsaG000960	0.810996	1.495442e-50	2.616565e-48
MsaG045767	MsaG000960	0.803213	6.530804e-49	9.499445e-47
MsaG046143	MsaG000960	0.805017	2.763561e-49	4.191435e-47
MsaG046378	MsaG000960	0.806127	1.620527e-49	2.522401e-47
MsaG046431	MsaG000960	0.817545	5.430797e-52	1.120308e-49
MsaG046473	MsaG000960	0.856016	8.295942e-62	5.560269e-59
MsaG046507	MsaG000960	0.814937	2.065522e-51	3.986519e-49
MsaG047007	MsaG000960	0.833230	1.089328e-55	3.462277e-53
MsaG000960	MsaG033433	0.824415	1.447470e-53	3.583393e-51
MsaG000960	MsaG031379	0.834426	5.487963e-56	1.807074e-53
MsaG000960	MsaG032668	0.810831	1.623399e-50	2.829064e-48
MsaG014153	MsaG000960	0.804574	3.416224e-49	5.128210e-47
MsaG015807	MsaG000960	0.822745	3.543584e-53	8.384353e-51
MsaG016540	MsaG000960	0.801090	1.776877e-48	2.462204e-46
MsaG017852	MsaG000960	0.836108	2.074740e-56	7.184332e-54
MsaG019222	MsaG000960	0.801373	1.555604e-48	2.169519e-46
MsaG019234	MsaG000960	0.835793	2.491317e-56	8.545348e-54
MsaG021432	MsaG000960	0.846097	5.058851e-59	2.403702e-56
MsaG021532	MsaG000960	0.804886	2.941579e-49	4.447870e-47
MsaG021530	MsaG000960	0.826611	4.394611e-54	1.155917e-51
MsaG023628	MsaG000960	0.816981	7.263870e-52	1.476863e-49
MsaG023822	MsaG000960	0.852615	7.884097e-61	4.679667e-58
MsaG024668	MsaG000960	0.848304	1.263995e-59	6.466062e-57
MsaG028621	MsaG000960	0.828823	1.300337e-54	3.638845e-52
MsaG029046	MsaG000960	0.868921	9.232392e-66	1.022706e-62
MsaG029361	MsaG000960	0.802242	1.033709e-48	1.470400e-46
MsaG029896	MsaG000960	0.814957	2.045500e-51	3.949811e-49
MsaG030192	MsaG000960	0.822848	3.354289e-53	7.958568e-51
MsaG031754	MsaG000960	0.862566	9.172848e-64	7.870688e-61
MsaG033646	MsaG000960	0.855337	1.305943e-61	8.540264e-59
MsaG034328	MsaG000960	0.808691	4.660070e-50	7.711124e-48
MsaG035051	MsaG000960	0.846786	3.288618e-59	1.598889e-56
MsaG035198	MsaG000960	0.880224	1.383129e-69	2.522040e-66

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	MtrunA17_Chr1g0146231	89.398	349	26	4	1	343	1	344	0.0	601
MsaG000960	MtrunA17_Chr3g0140331	51.488	336	113	9	19	343	68	364	5.05e-93	281
MsaG000960	MtrunA17_Chr8g0340401	43.567	342	138	13	23	343	35	342	1.47e-69	221
MsaG000960	MtrunA17_Chr8g0372291	45.729	199	90	5	105	303	108	288	1.48e-43	152
MsaG000960	MtrunA17_Chr6g0461591	38.696	230	106	7	104	299	30	258	1.01e-39	140
MsaG000960	MtrunA17_Chr4g0035891	32.390	318	143	10	5	302	15	280	5.91e-38	137
MsaG000960	MtrunA17_Chr5g0404981	43.498	223	92	7	105	303	158	370	1.55e-36	135
MsaG000960	MtrunA17_Chr3g0145121	36.765	204	111	3	101	303	99	285	2.34e-35	130
MsaG000960	MtrunA17_Chr1g0169431	78.873	71	15	0	232	302	171	241	7.32e-35	127
MsaG000960	MtrunA17_Chr1g0199671	33.438	317	146	11	27	297	9	306	7.62e-35	130
MsaG000960	MtrunA17_Chr7g0253101	39.091	220	94	8	108	297	43	252	4.40e-33	123
MsaG000960	MtrunA17_Chr5g0395391	74.648	71	18	0	232	302	269	339	5.78e-33	125
MsaG000960	MtrunA17_Chr5g0395391	72.222	72	20	0	232	303	167	238	1.22e-29	116
MsaG000960	MtrunA17_Chr1g0213161	55.963	109	43	2	212	319	130	234	3.93e-32	120
MsaG000960	MtrunA17_Chr2g0326771	76.923	65	15	0	233	297	216	280	1.29e-31	120
MsaG000960	MtrunA17_Chr4g0028961	73.134	67	18	0	233	299	232	298	6.78e-31	119
MsaG000960	MtrunA17_Chr7g0232671	62.903	62	23	0	233	294	187	248	2.97e-21	91.3
MsaG000960	MtrunA17_Chr7g0232701	58.065	62	26	0	233	294	73	134	2.72e-19	83.2
MsaG000960	MtrunA17_Chr7g0232681	56.923	65	27	1	230	294	130	193	7.74e-19	83.6
MsaG000960	MtrunA17_Chr7g0271861	70.588	34	10	0	235	268	24	57	2.31e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000960	AT5G25830.1	55.598	259	98	7	102	343	73	331	1.25e-83	256
MsaG000960	AT4G32890.1	42.899	338	133	10	21	343	16	308	2.88e-74	232
MsaG000960	AT2G45050.1	41.631	233	79	7	98	313	65	257	2.12e-44	153
MsaG000960	AT3G60530.1	45.411	207	67	7	98	301	63	226	1.04e-43	151
MsaG000960	AT5G66320.2	37.455	275	115	8	69	315	86	331	1.69e-37	137
MsaG000960	AT5G66320.1	37.455	275	115	8	69	315	86	331	1.69e-37	137
MsaG000960	AT4G34680.1	37.850	214	87	5	91	302	80	249	1.94e-35	130
MsaG000960	AT4G34680.2	37.850	214	87	5	91	302	80	249	1.94e-35	130
MsaG000960	AT4G36240.1	41.176	204	69	6	106	300	70	231	2.90e-34	126
MsaG000960	AT3G24050.1	74.286	70	18	0	232	301	193	262	2.59e-33	124
MsaG000960	AT1G08010.2	65.476	84	23	1	228	305	215	298	6.37e-33	124
MsaG000960	AT1G08010.1	65.476	84	23	1	228	305	215	298	6.37e-33	124
MsaG000960	AT1G08010.3	65.476	84	23	1	228	305	215	298	6.37e-33	124
MsaG000960	AT1G08000.2	70.833	72	21	0	228	299	213	284	5.26e-31	119
MsaG000960	AT1G08000.1	70.833	72	21	0	228	299	213	284	5.26e-31	119
MsaG000960	AT3G54810.1	62.963	81	30	0	233	313	229	309	6.25e-31	119
MsaG000960	AT3G54810.2	62.963	81	30	0	233	313	229	309	6.25e-31	119
MsaG000960	AT3G51080.1	32.268	313	161	10	6	301	11	289	7.84e-30	116
MsaG000960	AT3G45170.1	43.846	130	62	2	181	301	56	183	1.08e-26	105
MsaG000960	AT2G28340.1	69.841	63	19	0	235	297	193	255	1.98e-26	106

Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCGTCACTGTCCTTTCTTCT+TGG	0.090798	1:+13014398	None:intergenic
AAAACGATTCCTCATCAATA+TGG	0.237248	1:+13014711	None:intergenic
TCAAAAGATGCAACTGATAT+CGG	0.281999	1:-13014675	MsaT000960.1:CDS
GCAGTCTTTGCCTGCTTCCT+TGG	0.291400	1:+13014422	None:intergenic
TACTCTGATGTTGTAAAATC+TGG	0.292416	1:+13014120	None:intergenic
CCAATATCAGGAACGACATT+AGG	0.299571	1:+13015289	None:intergenic
CCTAATGTCGTTCCTGATAT+TGG	0.316834	1:-13015289	MsaT000960.1:CDS
TATATTCAACAAGGACGTTT+TGG	0.333107	1:-13014588	MsaT000960.1:CDS
CTAGCTGCAGGCCTGTATTC+AGG	0.333508	1:+13014242	None:intergenic
CTCGAGAGACCTGTGTGTTC+CGG	0.348887	1:-13015243	MsaT000960.1:CDS
CGACGTCATTGTTGAGGTTA+AGG	0.370723	1:+13015434	None:intergenic
TGTTGAATATAGGACTGTTT+CGG	0.382615	1:+13014600	None:intergenic
AAGACACCACAATGGCGAAC+CGG	0.386976	1:-13014329	MsaT000960.1:CDS
TTACTTGATTCACCAACATA+TGG	0.405233	1:-13014069	MsaT000960.1:CDS
ACGATGCGAGTTAGAGTGTT+TGG	0.406152	1:+13014202	None:intergenic
AGGACTGTTTCGGTTGGGTT+GGG	0.406165	1:+13014610	None:intergenic
GTTGGGTTGGGAAAGCTCAC+GGG	0.412320	1:+13014622	None:intergenic
CAATGGCGAACCGGGCCTAA+TGG	0.420213	1:-13014320	MsaT000960.1:CDS
GGAGGATGACTTAGCGGCCC+TGG	0.433321	1:-13014744	MsaT000960.1:CDS
CAATATCAGGAACGACATTA+GGG	0.434396	1:+13015290	None:intergenic
CACGGTAACGGTGGAGGAAG+AGG	0.434827	1:+13015351	None:intergenic
AAAACGTCCTTGTTGAATAT+AGG	0.436633	1:+13014590	None:intergenic
CTCTTGCTACGGGCCTTAGC+TGG	0.442400	1:+13014563	None:intergenic
TGTCGGAGGAAAAGGTGGTT+TGG	0.443866	1:+13015491	None:intergenic
CACACAGGTCTCTCGAGAAA+TGG	0.447481	1:+13015249	None:intergenic
GGTTGGGTTGGGAAAGCTCA+CGG	0.448750	1:+13014621	None:intergenic
ATGACTTAGCGGCCCTGGAC+TGG	0.449566	1:-13014739	MsaT000960.1:CDS
TACATCATCTGCCTAAAATC+AGG	0.450652	1:+13014044	None:intergenic
AATATAGGACTGTTTCGGTT+GGG	0.459476	1:+13014605	None:intergenic
TAGGACTGTTTCGGTTGGGT+TGG	0.462649	1:+13014609	None:intergenic
AGTGTTGTTGTCGGAGGAAA+AGG	0.462952	1:+13015483	None:intergenic
AAGGACAGTGACGGAGGGTC+AGG	0.466229	1:-13014389	MsaT000960.1:CDS
GAGGCAGAAGGAAATGTTGC+GGG	0.466463	1:-13014162	MsaT000960.1:CDS
TACTTGATTCACCAACATAT+GGG	0.466490	1:-13014068	MsaT000960.1:CDS
GTCGATTGGTGCCTGAATAC+AGG	0.470023	1:-13014253	MsaT000960.1:CDS
AGACACCACAATGGCGAACC+GGG	0.471491	1:-13014328	MsaT000960.1:CDS
GCCCACGAGTCCTCTTGCTA+CGG	0.473059	1:+13014552	None:intergenic
GAATATAGGACTGTTTCGGT+TGG	0.481982	1:+13014604	None:intergenic
GCTCACGGGGTTCTTCATCC+TGG	0.486213	1:+13014636	None:intergenic
GTTAGCTCGTCATCATTGTC+CGG	0.486841	1:-13015319	MsaT000960.1:CDS
CAAAAGATGCAACTGATATC+GGG	0.494290	1:-13014674	MsaT000960.1:CDS
AAACGATTCCTCATCAATAT+GGG	0.498163	1:+13014712	None:intergenic
GACGTGAGCTCCAGTCGCAA+GGG	0.498267	1:+13014528	None:intergenic
TGTTTGGTCAGCACAAATGT+AGG	0.504596	1:+13014218	None:intergenic
ATCGTAAAGTGTTGGAGCTA+CGG	0.505579	1:-13014184	MsaT000960.1:CDS
AAGGTTGGTGTCGGAAATGA+TGG	0.507635	1:+13015399	None:intergenic
GGTGGTTTGGAAAATGTTGT+TGG	0.508256	1:+13015504	None:intergenic
CATATACACATATAATATAC+CGG	0.516324	1:+13015224	None:intergenic
TACCGACAATTTCATTGTTG+AGG	0.524862	1:-13015461	MsaT000960.1:CDS
ATTGACCACGGTAACGGTGG+AGG	0.527850	1:+13015345	None:intergenic
GCCCGTAGCAAGAGGACTCG+TGG	0.533598	1:-13014554	MsaT000960.1:CDS
AAGATACAAGTCGGGTCGAT+TGG	0.534399	1:-13014267	MsaT000960.1:CDS
CCCACGAGTCCTCTTGCTAC+GGG	0.537511	1:+13014553	None:intergenic
GGGCATGAAGGTGCGAAACC+AGG	0.537637	1:-13014654	MsaT000960.1:CDS
GACGGAGGGTCAGGTGGAGA+TGG	0.539597	1:-13014380	MsaT000960.1:CDS
GTTGTTGTCGGAGGAAAAGG+TGG	0.541025	1:+13015486	None:intergenic
TGGAACAGTGACGGTAGGTA+AGG	0.543018	1:+13014442	None:intergenic
AACAGTGACGGTAGGTAAGG+TGG	0.543787	1:+13014445	None:intergenic
GAGGGTCAGGTGGAGATGGT+CGG	0.544742	1:-13014376	MsaT000960.1:CDS
CGTCACTGTTCCAAGGAAGC+AGG	0.545318	1:-13014432	MsaT000960.1:CDS
AATCAAGTAATCATCATGGT+TGG	0.550610	1:+13014082	None:intergenic
CAATATGGGAAATCCAGTCC+AGG	0.555569	1:+13014726	None:intergenic
AAAGACTGCTCCAAGAAGAA+AGG	0.555772	1:-13014408	MsaT000960.1:CDS
AACGCTATTGACCACGGTAA+CGG	0.557909	1:+13015339	None:intergenic
GACAGTGACGGAGGGTCAGG+TGG	0.558691	1:-13014386	MsaT000960.1:CDS
AGTTGATTGTGGCTGAGTCA+AGG	0.559211	1:+13015380	None:intergenic
ACAAATGTAGGGCTAGCTGC+AGG	0.560737	1:+13014230	None:intergenic
AGACGTGAGCTCCAGTCGCA+AGG	0.560751	1:+13014527	None:intergenic
ACAGTGACGGTAGGTAAGGT+GGG	0.561238	1:+13014446	None:intergenic
GAAATAGGAGGATGACTTAG+CGG	0.565643	1:-13014750	MsaT000960.1:intron
GTCCTCAACAATGAAATTGT+CGG	0.566137	1:+13015459	None:intergenic
GCAACTGATATCGGGCATGA+AGG	0.569194	1:-13014666	MsaT000960.1:CDS
TAAAATCAGGTCCCATATGT+TGG	0.573858	1:+13014057	None:intergenic
GTTTGGTCAGCACAAATGTA+GGG	0.574012	1:+13014219	None:intergenic
CCCGTAGCAAGAGGACTCGT+GGG	0.574146	1:-13014553	MsaT000960.1:CDS
GATTGTGGCTGAGTCAAGGT+TGG	0.578853	1:+13015384	None:intergenic
TTGGGTTGGGAAAGCTCACG+GGG	0.578980	1:+13014623	None:intergenic
CAGCTAAGGCCCGTAGCAAG+AGG	0.579929	1:-13014562	MsaT000960.1:CDS
TTAGGCCCGGTTCGCCATTG+TGG	0.587065	1:+13014323	None:intergenic
TTAGCTCGTCATCATTGTCC+GGG	0.587117	1:-13015318	MsaT000960.1:CDS
TTGTGGTGTAAGATACAAGT+CGG	0.589234	1:-13014276	MsaT000960.1:CDS
CTGCTTCCTTGGAACAGTGA+CGG	0.590093	1:+13014433	None:intergenic
ATTCCCTACGTAGGAATGGA+AGG	0.590186	1:-13015532	None:intergenic
ATTGTCGGTAGTGTTGTTGT+CGG	0.590207	1:+13015474	None:intergenic
GGTCAGGTGGAGATGGTCGG+AGG	0.590443	1:-13014373	MsaT000960.1:CDS
GTCGGTAGTGTTGTTGTCGG+AGG	0.590547	1:+13015477	None:intergenic
TACCTACCGTCACTGTTCCA+AGG	0.593877	1:-13014439	MsaT000960.1:CDS
CGTCGTCGACGTCATTGTTG+AGG	0.596242	1:+13015428	None:intergenic
CTGGATTTCCCATATTGATG+AGG	0.600285	1:-13014720	MsaT000960.1:CDS
TAACTCGCATCGTAAAGTGT+TGG	0.602752	1:-13014192	MsaT000960.1:CDS
AACGACATTAGGGTCGCACC+CGG	0.603894	1:+13015300	None:intergenic
CTCTTCCTCCACCGTTACCG+TGG	0.606184	1:-13015350	MsaT000960.1:CDS
GGCTGAGTCAAGGTTGGTGT+CGG	0.607066	1:+13015390	None:intergenic
TGTGGTGTAAGATACAAGTC+GGG	0.608929	1:-13014275	MsaT000960.1:CDS
GTTGGAGCTACGGAGGCAGA+AGG	0.611025	1:-13014174	MsaT000960.1:CDS
CGTCATTGTTGAGGTTAAGG+AGG	0.612987	1:+13015437	None:intergenic
ACGTGAGCTCCAGTCGCAAG+GGG	0.619626	1:+13014529	None:intergenic
AAAACATTATGCAACGCTTG+TGG	0.628460	1:-13014293	MsaT000960.1:CDS
GCTATTGACCACGGTAACGG+TGG	0.631846	1:+13015342	None:intergenic
GAAGAAAGGACAGTGACGGA+GGG	0.637953	1:-13014394	MsaT000960.1:CDS
CCAAGAAGAAAGGACAGTGA+CGG	0.640630	1:-13014398	MsaT000960.1:CDS
AGAAGAAAGGACAGTGACGG+AGG	0.643844	1:-13014395	MsaT000960.1:CDS
CAGTGACGGTAGGTAAGGTG+GGG	0.651207	1:+13014447	None:intergenic
AATATGGGAAATCCAGTCCA+GGG	0.656494	1:+13014727	None:intergenic
GGTGAATCAAGTAATCATCA+TGG	0.660405	1:+13014078	None:intergenic
AGAGGCGGTTGAGTTGATTG+TGG	0.662222	1:+13015369	None:intergenic
GTAAAGTGTTGGAGCTACGG+AGG	0.667005	1:-13014181	MsaT000960.1:CDS
GGAGGCAGAAGGAAATGTTG+CGG	0.675658	1:-13014163	MsaT000960.1:CDS
AGTTCTGACTCAGAAGAAGA+CGG	0.679246	1:+13014482	None:intergenic
TTCCTTGGAACAGTGACGGT+AGG	0.684302	1:+13014437	None:intergenic
GGTAACGGTGGAGGAAGAGG+CGG	0.684503	1:+13015354	None:intergenic
AGTGACGGTAGGTAAGGTGG+GGG	0.685489	1:+13014448	None:intergenic
TATAATATACCGGAACACAC+AGG	0.691414	1:+13015234	None:intergenic
CGAGCTAACGCTATTGACCA+CGG	0.719172	1:+13015333	None:intergenic
CGTGAGCTCCAGTCGCAAGG+GGG	0.723454	1:+13014530	None:intergenic
TGACAGACAAGACACCACAA+TGG	0.724676	1:-13014337	MsaT000960.1:CDS
AAACAGTCCTATATTCAACA+AGG	0.731972	1:-13014597	MsaT000960.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	13014043	13015539	13014043	ID=MsaG000960
Chr1	mRNA	13014043	13015539	13014043	ID=MsaT000960.1;Parent=MsaG000960
Chr1	exon	13014043	13014765	13014043	ID=MsaT000960.1.exon2;Parent=MsaT000960.1
Chr1	CDS	13014043	13014765	13014043	ID=cds.MsaT000960.1;Parent=MsaT000960.1
Chr1	exon	13015231	13015539	13015231	ID=MsaT000960.1.exon1;Parent=MsaT000960.1
Chr1	CDS	13015231	13015539	13015231	ID=cds.MsaT000960.1;Parent=MsaT000960.1

Gene Sequence

>MsaT000960.1

ATGGAAGGCACAACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCAGCCACAATCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGTATCGAATTTTTACGGACCATTTCTCGAGAGACCTGTGTGTTCCGGTATATTATATGTGAGGATGACTTAGCGGCCCTGGACTGGATTTCCCATATTGATGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCGGGCATGAAGGTGCGAAACCAGGATGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGACGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTCCTTATTCCCACCCCCACCTTACCTACCGTCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGTCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCTAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACCATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG

Protein sequence

>MsaT000960.1

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATINSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGIEFLRTISRETCVFRYIICEDDLAALDWISHIDEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKDVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPTLPTVTVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNHDDYLIHQHMGPDFRQMM*