AlfalfaGEDB | MsaG000967

M. sativa ssp. caerulea / MsaG000967

KEGG: K08959 K08960
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000967	XP_013465670.1	97.872	423	9	0	1	423	1	423	0.0	860

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000967	sp\|Q8LPI7\|CKL4_ARATH	59.375	416	149	3	1	408	1	404	7.73e-179	508

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000967	tr\|A0A072VDN0\|A0A072VDN0_MEDTR	97.872	423	9	0	1	423	1	423	0.0	860

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000967	MsaG037739	0.900008	2.587061e-77	1.324081e-73
MsaG000967	MsaG045532	0.864447	2.408214e-64	2.225693e-61

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000967	MtrunA17_Chr1g0146151	97.872	423	9	0	1	423	1	423	0.0	860
MsaG000967	MtrunA17_Chr3g0140071	62.617	428	153	2	1	421	1	428	0.0	537
MsaG000967	MtrunA17_Chr6g0486611	71.605	324	91	1	1	323	1	324	4.94e-177	501
MsaG000967	MtrunA17_Chr8g0390211	59.251	427	163	5	1	421	1	422	8.17e-177	500
MsaG000967	MtrunA17_Chr4g0071031	66.565	329	107	1	1	326	1	329	3.25e-166	474
MsaG000967	MtrunA17_Chr2g0329981	67.398	319	104	0	1	319	1	319	5.96e-165	472
MsaG000967	MtrunA17_Chr2g0299661	65.350	329	111	1	1	326	1	329	7.20e-164	469
MsaG000967	MtrunA17_Chr1g0166821	65.465	333	110	1	1	333	2	329	7.72e-164	468
MsaG000967	MtrunA17_Chr1g0183631	69.831	295	89	0	1	295	1	295	6.44e-162	463
MsaG000967	MtrunA17_Chr1g0187571	64.832	327	110	1	1	327	2	323	3.57e-161	462

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG000967	AT4G28860.1	59.375	416	149	3	1	408	1	404	7.86e-180	508
MsaG000967	AT4G28880.3	57.656	418	165	4	1	413	1	411	3.25e-177	501
MsaG000967	AT4G28880.2	57.656	418	165	4	1	413	1	411	3.25e-177	501
MsaG000967	AT4G28880.1	57.656	418	165	4	1	413	1	411	3.25e-177	501
MsaG000967	AT4G28880.4	57.656	418	165	4	1	413	1	411	3.25e-177	501
MsaG000967	AT4G28860.2	63.934	366	120	2	1	366	1	354	8.24e-176	496
MsaG000967	AT4G26100.1	55.637	408	169	5	1	405	1	399	3.28e-166	474
MsaG000967	AT5G57015.1	67.702	322	102	1	1	320	1	322	6.57e-166	473
MsaG000967	AT3G23340.1	56.219	402	163	4	1	396	1	395	1.91e-160	459
MsaG000967	AT1G72710.1	66.144	319	107	1	1	319	1	318	4.72e-160	459

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Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTAGTGGATCATT+TGG	0.395776	1:-13101917	MsaT000967.1:CDS
AAACCGGATAACTTTCTTAT+GGG	0.337171	1:-13100303	MsaT000967.1:CDS
AAAGTAAGAAGCAAACTCCA+CGG	0.637426	1:+13099162	None:intergenic
AAAGTTAAACACTCCCGTTG+AGG	0.684502	1:-13099316	MsaT000967.1:intron
AAGTAAGAAGCAAACTCCAC+GGG	0.633022	1:+13099163	None:intergenic
AAGTGAACAATTCACGAAAC+AGG	0.453549	1:+13099083	None:intergenic
AAGTTATATAATATTCTTAA+AGG	0.281266	1:-13101113	MsaT000967.1:CDS
ACAACCACAGCTACTATATG+AGG	0.509476	1:-13101138	MsaT000967.1:CDS
ACCTGCTTTACTACTGTAGT+GGG	0.563020	1:-13100893	MsaT000967.1:CDS
ACGTGTTTGTATGAAGCTCA+GGG	0.653358	1:-13098293	MsaT000967.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	13097960	13101978	13097960	ID=MsaG000967
Chr1	mRNA	13097960	13101978	13097960	ID=MsaT000967.1;Parent=MsaG000967
Chr1	exon	13097960	13098124	13097960	ID=MsaT000967.1.exon14;Parent=MsaT000967.1
Chr1	CDS	13097960	13098124	13097960	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13098246	13098373	13098246	ID=MsaT000967.1.exon13;Parent=MsaT000967.1
Chr1	CDS	13098246	13098373	13098246	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13098487	13098541	13098487	ID=MsaT000967.1.exon12;Parent=MsaT000967.1
Chr1	CDS	13098487	13098541	13098487	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13098835	13098917	13098835	ID=MsaT000967.1.exon11;Parent=MsaT000967.1
Chr1	CDS	13098835	13098917	13098835	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13099077	13099203	13099077	ID=MsaT000967.1.exon10;Parent=MsaT000967.1
Chr1	CDS	13099077	13099203	13099077	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13099317	13099401	13099317	ID=MsaT000967.1.exon9;Parent=MsaT000967.1
Chr1	CDS	13099317	13099401	13099317	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13099531	13099594	13099531	ID=MsaT000967.1.exon8;Parent=MsaT000967.1
Chr1	CDS	13099531	13099594	13099531	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13099694	13099755	13099694	ID=MsaT000967.1.exon7;Parent=MsaT000967.1
Chr1	CDS	13099694	13099755	13099694	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13100115	13100185	13100115	ID=MsaT000967.1.exon6;Parent=MsaT000967.1
Chr1	CDS	13100115	13100185	13100115	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13100281	13100376	13100281	ID=MsaT000967.1.exon5;Parent=MsaT000967.1
Chr1	CDS	13100281	13100376	13100281	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13100851	13100999	13100851	ID=MsaT000967.1.exon4;Parent=MsaT000967.1
Chr1	CDS	13100851	13100999	13100851	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13101108	13101177	13101108	ID=MsaT000967.1.exon3;Parent=MsaT000967.1
Chr1	CDS	13101108	13101177	13101108	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13101773	13101813	13101773	ID=MsaT000967.1.exon2;Parent=MsaT000967.1
Chr1	CDS	13101773	13101813	13101773	ID=cds.MsaT000967.1;Parent=MsaT000967.1
Chr1	exon	13101903	13101978	13101903	ID=MsaT000967.1.exon1;Parent=MsaT000967.1
Chr1	CDS	13101903	13101978	13101903	ID=cds.MsaT000967.1;Parent=MsaT000967.1

Gene Sequence

>MsaT000967.1

ATGGAAAAGGTTGTTGGAGGAAAGTATAGAATTGGTAGGAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGGTGCACATGTTGTGACTTCTGAGCTTGTGGCCATTAAGAAGGAGAAGAAGAAAACTCAACAACCACAGCTACTATATGAGGCAAAGTTATATAATATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGTCCGAGTCTCGATGACCTGCTTTACTACTGTAGTGGGAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCCGATCAAATGCTTACGAGGATAGAGTATTTACATTCCAAGGGATTACTACACAGAGATATCAAACCGGATAACTTTCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTGTATGATTGATTTTGGACTTTCAAAAGGATACAGGGATCCTATCAGTTACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGAACTGCACGTTATGCAAGTAGCAATACTCACAAAGGAATTGAGCAAAGCCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAAGGTCTGCAAGCTGCCACCAGAATGCAAAAATATGAAAAAATATGCGAAACAAAGTTAAACACTCCCGTTGAGGTACTTTGCAAGTCATGTCCCGTGGAGTTTGCTTCTTACTTTCATTATTGCCGCTCCTTGACATTCGATCAACGACCAGATTATGGATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGATGCTGACTATTTATATGACTGGACGATTTTAAAATATCAGGAGATTCAACAGATAAAGGCACAAAATCAATCAATAGCTCCAGTTGCCGTGCCTACCAGTCTTGAACCAGGGGATGTGGATGAGCATACAGAATACAATGATTGTACTCAAAATGCTGTGCCAAAACCAAAAATCTATACCGACCGTCCACGTGTTTGTATGAAGCTCAGGGTAGCTAACGTCGACAATCTTGATGATGAGATTCAAACAGATACACAAAATGTGAATACTGATTTACCTATTTCCACTGTCATGCCTAAGGAAGATGTTCCAAAACCAGAAACGACTGTGGAAACCTCAAACCCTAATGACGTGTTAGGGAGTAAATGTGGTGCTTCTGATGACTTGGTTCCTTCAATACGCCGAGTTCCATCCATCAATTAG

Protein sequence

>MsaT000967.1

MEKVVGGKYRIGRKIGSGSFGEIYIGAHVVTSELVAIKKEKKKTQQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLDDLLYYCSGKFSLKSVLMLADQMLTRIEYLHSKGLLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASSNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAATRMQKYEKICETKLNTPVEVLCKSCPVEFASYFHYCRSLTFDQRPDYGYLKRLFRELFTSKGYDADYLYDWTILKYQEIQQIKAQNQSIAPVAVPTSLEPGDVDEHTEYNDCTQNAVPKPKIYTDRPRVCMKLRVANVDNLDDEIQTDTQNVNTDLPISTVMPKEDVPKPETTVETSNPNDVLGSKCGASDDLVPSIRRVPSIN*