AlfalfaGEDB | MsaG001021

M. sativa ssp. caerulea / MsaG001021

KEGG: -
GO: GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001021	KEH40351.1	93.023	387	26	1	1	386	1	387	0.0	737

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001021	sp\|Q39191\|WAK1_ARATH	56.010	391	158	6	1	386	354	735	5.34e-139	416

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001021	tr\|A0A072VFL2\|A0A072VFL2_MEDTR	93.023	387	26	1	1	386	1	387	0.0	737

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000029	MsaG001021	0.875966	4.219091e-68	6.334480e-65
MsaG000045	MsaG001021	0.890203	2.679864e-73	7.981195e-70
MsaG000062	MsaG001021	0.829352	9.688179e-55	2.752193e-52
MsaG000070	MsaG001021	0.843197	3.028543e-58	1.308629e-55
MsaG000083	MsaG001021	0.853478	4.477778e-61	2.739946e-58
MsaG000113	MsaG001021	0.828170	1.865638e-54	5.126239e-52
MsaG000127	MsaG001021	0.832770	1.416267e-55	4.440763e-53
MsaG000128	MsaG001021	0.838333	5.627944e-57	2.085405e-54
MsaG000151	MsaG001021	0.860407	4.150990e-63	3.278528e-60
MsaG000153	MsaG001021	0.883507	9.059414e-71	1.930475e-67

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG001021	MtrunA17_Chr1g0158291	93.023	387	26	1	1	386	1	387	737
MsaG001021	MtrunA17_Chr1g0158211	77.202	386	88	0	1	386	97	482	618
MsaG001021	MtrunA17_Chr1g0158261	76.425	386	91	0	1	386	355	740	610
MsaG001021	MtrunA17_Chr1g0158201	75.648	386	94	0	1	386	359	744	609
MsaG001021	MtrunA17_Chr1g0158231	74.870	386	97	0	1	386	75	460	604
MsaG001021	MtrunA17_Chr1g0158251	74.352	386	99	0	1	386	364	749	595
MsaG001021	MtrunA17_Chr1g0158171	76.216	370	87	1	1	370	86	454	584
MsaG001021	MtrunA17_Chr1g0148511	68.101	395	116	2	1	386	362	755	547
MsaG001021	MtrunA17_Chr1g0148501	69.689	386	115	2	1	386	378	761	546
MsaG001021	MtrunA17_Chr1g0148491	66.667	387	127	2	1	386	284	669	535

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001021	AT1G21250.1	56.010	391	158	6	1	386	354	735	5.43e-140	416
MsaG001021	AT1G21240.1	55.469	384	162	4	4	386	366	741	1.65e-138	412
MsaG001021	AT1G21210.1	54.331	381	167	3	7	386	364	738	1.50e-137	410
MsaG001021	AT1G21230.1	54.948	384	163	5	4	386	359	733	3.04e-136	406
MsaG001021	AT1G21270.1	53.906	384	170	3	4	386	355	732	6.39e-135	403
MsaG001021	AT3G25490.1	53.723	376	164	5	12	386	67	433	1.03e-129	379
MsaG001021	AT1G69730.1	55.828	326	144	0	4	329	398	723	2.52e-125	380
MsaG001021	AT1G21240.2	57.669	326	129	4	62	386	163	480	2.88e-123	365
MsaG001021	AT1G79680.1	50.532	376	171	2	4	364	384	759	8.07e-123	373
MsaG001021	AT1G16130.1	55.927	329	141	3	1	328	365	690	2.52e-122	371

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Find 88 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATAGGTTTCTCCC+CGG	0.589452	1:+13997527	None:intergenic
AAAAGTGATGTCTATAGCTT+CGG	0.471464	1:-13997573	MsaT001021.1:CDS
AAACTCAATCATTACTTCAA+GGG	0.536535	1:-13997245	MsaT001021.1:CDS
AAATAGGTTTCTCCCCGGTT+AGG	0.446519	1:+13997532	None:intergenic
AAATTCTTTAAACAAAATGG+TGG	0.622215	1:-13998236	MsaT001021.1:CDS
AACATTTCTGTGATTAATTA+GGG	0.262997	1:+13997971	None:intergenic
AACTCAATCATTACTTCAAG+GGG	0.577391	1:-13997244	MsaT001021.1:CDS
AAGACCTATCATGAAAGAAG+TGG	0.610879	1:-13997337	MsaT001021.1:CDS
AAGAGTTCCTTGTACCACCG+TGG	0.747143	1:+13997641	None:intergenic
AAGATAGGAAGTGAATTGCT+AGG	0.587679	1:+13997481	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	13997137	13998297	13997137	ID=MsaG001021
Chr1	mRNA	13997137	13998297	13997137	ID=MsaT001021.1;Parent=MsaG001021
Chr1	exon	13997137	13998297	13997137	ID=MsaT001021.1.exon1;Parent=MsaT001021.1
Chr1	CDS	13997137	13998297	13997137	ID=cds.MsaT001021.1;Parent=MsaT001021.1

Gene Sequence

>MsaT001021.1

ATGTTATATCAAAGAAGAAAACTCTTGAAACTAAAAGAGAAATTCTTTAAACAAAATGGTGGTTTCATTTTGTTACGCCAACTTTCTAAAAGAGAAGACACATCAGGAACTGCTCAAATTTTCAAAGAAGATGAACTTAAGAAAGCTACCAACAACTATGAGGAGAGTTTAATAATTGGCCGAGGAGGTTTCGGTACAGTGTTCAAAGGAATTCTAGGAGACAACAGGGTTGTCGCAATCAAGAAGTCCAAAATAATGGATGCCACCCAAGTAGAGCAATTCATAAATGAGGTGGTCGTTTTGTCCCTAATTAATCACAGAAATGTTGTCAAACTCTTGGGATGTTGTTTGGAGACAGAAGTTCCTTTACTAGTCTATGAATTTATTAGCAATGGTACCCTTTTCGATTTCATACACAATAGTATAGAGAAGGCAGACAATGCAATATGGAAAATGCGTTTAAGGATAGCCGCAGAGATAGCAGGAGCTTTATCGTATCTACATTCATCTGCATCCTTACCAATTATCCATAGAGATGTCAAAAGTACCAACATTCTCTTGGATGACAATTACACTGCAAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCATACTACGATAGCCACGGTGGTACAAGGAACTCTTGGCTATTTAGATCCAGAATATATGCAAACACACCAACTAACAGAGAAAAGTGATGTCTATAGCTTCGGAGTAGTGCTGGCAGAGCTCCTAACCGGGGAGAAACCTATTTCTTTTAATAGACCAGAAGAGAACAGAAGCCTAGCAATTCACTTCCTATCTTATTTTAGAGAGAATTGGATGTCTGAAGTTTTTCAAGTTGGTATTTTGAATGATGGGAACAAGGAGGAGATTAAGGAAGTTGCTATTCTTGCAGCTAGGTGTTTGAGACTTAAAGGGGAGGAAAGACCTATCATGAAAGAAGTGGCTATGGAGTTGGAAGGCTTAAGGTTAATGGAGAAGCACCCTTGGACCAAATCAGAGATAAATCTTGATGAAACTCAATCATTACTTCAAGGGGCATCATCCAACTTTAGTTATGAAACTGGTGATAGCAGCCTTCATGAATATAGTGGCTACGACAGCCTGAAAGTTCATGCACCAATGTCCTTGGATGATGGAAGATGA

Protein sequence

>MsaT001021.1

MLYQRRKLLKLKEKFFKQNGGFILLRQLSKREDTSGTAQIFKEDELKKATNNYEESLIIGRGGFGTVFKGILGDNRVVAIKKSKIMDATQVEQFINEVVVLSLINHRNVVKLLGCCLETEVPLLVYEFISNGTLFDFIHNSIEKADNAIWKMRLRIAAEIAGALSYLHSSASLPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDHTTIATVVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGEKPISFNRPEENRSLAIHFLSYFRENWMSEVFQVGILNDGNKEEIKEVAILAARCLRLKGEERPIMKEVAMELEGLRLMEKHPWTKSEINLDETQSLLQGASSNFSYETGDSSLHEYSGYDSLKVHAPMSLDDGR*